Examples with POCDMT000002UK01Component5 uk.nhs.connect.iucds.cda.ucr.POCDMT000002UK01Component5 used on opensource projects

Example 1 with POCDMT000002UK01Component5

use of uk.nhs.connect.iucds.cda.ucr.POCDMT000002UK01Component5 in project integration-adaptor-111 by nhsconnect.

the class ObservationMapper method mapObservations.

public List<Observation> mapObservations(POCDMT000002UK01ClinicalDocument1 clinicalDocument, Encounter encounter) {
    List<Observation> observations = new ArrayList<>();
    POCDMT000002UK01Component2 component = clinicalDocument.getComponent();
    if (component.isSetStructuredBody()) {
        POCDMT000002UK01Component3[] components = component.getStructuredBody().getComponentArray();
        for (POCDMT000002UK01Component3 component3 : components) {
            POCDMT000002UK01Section section = component3.getSection();
            for (POCDMT000002UK01Component5 component5 : section.getComponentArray()) {
                ST title = component5.getSection().getTitle();
                if (nodeUtil.getNodeValueString(title).matches(PATIENTS_CONDITION_REGEXP)) {
                    StrucDocContent[] contentArray = component5.getSection().getText().getContentArray();
                    List<String> sectionText = stream(contentArray).map(it -> nodeUtil.getNodeValueString(it)).collect(toList());
                    observations.add(createObservation(encounter, sectionText));
                }
            }
        }
    }
    return observations;
}

Example 2 with POCDMT000002UK01Component5

use of uk.nhs.connect.iucds.cda.ucr.POCDMT000002UK01Component5 in project integration-adaptor-111 by nhsconnect.

the class ConditionMapper method mapCondition.

public Condition mapCondition(POCDMT000002UK01ClinicalDocument1 clinicalDocument, Encounter encounter, List<QuestionnaireResponse> questionnaireResponseList) {
    Condition condition = new Condition();
    condition.setIdElement(resourceUtil.newRandomUuid());
    condition.setClinicalStatus(Condition.ConditionClinicalStatus.ACTIVE).setVerificationStatus(Condition.ConditionVerificationStatus.UNKNOWN).setSubject(encounter.getSubject()).setContext(resourceUtil.createReference(encounter));
    if (questionnaireResponseList != null) {
        condition.setEvidence(evidenceOf(questionnaireResponseList));
    }
    addConditionReason(clinicalDocument, condition);
    if (clinicalDocument.getComponent().isSetStructuredBody()) {
        for (POCDMT000002UK01Component3 component3 : clinicalDocument.getComponent().getStructuredBody().getComponentArray()) {
            POCDMT000002UK01Section section = component3.getSection();
            for (POCDMT000002UK01Entry entry : section.getEntryArray()) {
                if (entry.isSetEncounter()) {
                    POCDMT000002UK01Encounter itkEncounter = entry.getEncounter();
                    if (itkEncounter.isSetEffectiveTime()) {
                        condition.setAssertedDateElement(DateUtil.parse(itkEncounter.getEffectiveTime().getValue()));
                    }
                    if (itkEncounter.isSetText()) {
                        condition.addCategory(new CodeableConcept().setText(nodeUtil.getAllText(itkEncounter.getText().getDomNode())));
                    }
                }
            }
            for (POCDMT000002UK01Component5 component : section.getComponentArray()) {
                if (component.getSection() != null) {
                    if (component.getSection().isSetLanguageCode()) {
                        if (component.getSection().getLanguageCode().isSetCode()) {
                            condition.setLanguage(component.getSection().getLanguageCode().getCode());
                        }
                    }
                }
            }
        }
    }
    return condition;
}

Example 3 with POCDMT000002UK01Component5

use of uk.nhs.connect.iucds.cda.ucr.POCDMT000002UK01Component5 in project integration-adaptor-111 by nhsconnect.

the class CompositionMapper method addSectionChildren.

private void addSectionChildren(SectionComponent component, POCDMT000002UK01Section section) {
    for (POCDMT000002UK01Component5 component5 : section.getComponentArray()) {
        POCDMT000002UK01Section innerSection = component5.getSection();
        SectionComponent innerCompositionSection = getSectionText(innerSection);
        component.addSection(innerCompositionSection);
        if (isNotEmpty(innerSection.getComponentArray())) {
            addSectionChildren(innerCompositionSection, innerSection);
        }
    }
}

Example 4 with POCDMT000002UK01Component5

use of uk.nhs.connect.iucds.cda.ucr.POCDMT000002UK01Component5 in project integration-adaptor-111 by nhsconnect.

the class ObservationMapperTest method setUp.

@BeforeEach
public void setUp() {
    POCDMT000002UK01Component2 component2 = mock(POCDMT000002UK01Component2.class);
    when(component2.isSetStructuredBody()).thenReturn(true);
    POCDMT000002UK01StructuredBody structuredBody = mock(POCDMT000002UK01StructuredBody.class);
    POCDMT000002UK01Component3 component3 = mock(POCDMT000002UK01Component3.class);
    POCDMT000002UK01Section section = mock(POCDMT000002UK01Section.class);
    POCDMT000002UK01Component5 component5 = mock(POCDMT000002UK01Component5.class);
    POCDMT000002UK01Section innerSection = mock(POCDMT000002UK01Section.class);
    StrucDocText text = mock(StrucDocText.class);
    StrucDocContent contentItem = mock(StrucDocContent.class);
    StrucDocContent[] content = new StrucDocContent[] { contentItem };
    when(text.getContentArray()).thenReturn(content);
    when(innerSection.getText()).thenReturn(text);
    ST title = mock(ST.class);
    when(nodeUtil.getNodeValueString(title)).thenReturn("Patient's Reported Condition");
    when(nodeUtil.getNodeValueString(contentItem)).thenReturn(OBSERVATION_VALUE);
    when(resourceUtil.newRandomUuid()).thenReturn(new IdType(RANDOM_UUID));
    when(resourceUtil.createReference(encounter)).thenReturn(new Reference(encounter));
    when(innerSection.getTitle()).thenReturn(title);
    when(component5.getSection()).thenReturn(innerSection);
    POCDMT000002UK01Component5[] components5 = new POCDMT000002UK01Component5[] { component5 };
    when(section.getComponentArray()).thenReturn(components5);
    when(component3.getSection()).thenReturn(section);
    POCDMT000002UK01Component3[] components3 = new POCDMT000002UK01Component3[] { component3 };
    when(structuredBody.getComponentArray()).thenReturn(components3);
    when(component2.getStructuredBody()).thenReturn(structuredBody);
    when(clinicalDocument.getComponent()).thenReturn(component2);
    when(encounter.getSubject()).thenReturn(subject);
}

Example 5 with POCDMT000002UK01Component5

use of uk.nhs.connect.iucds.cda.ucr.POCDMT000002UK01Component5 in project integration-adaptor-111 by nhsconnect.

the class AppointmentServiceTest method mockAppointmentSection.

private void mockAppointmentSection(POCDMT000002UK01Section section) {
    POCDMT000002UK01Component5 component5 = mock(POCDMT000002UK01Component5.class);
    POCDMT000002UK01Section section1 = mock(POCDMT000002UK01Section.class);
    CE code = mock(CE.class);
    when(section.getComponentArray()).thenReturn(new POCDMT000002UK01Component5[] { component5 });
    when(component5.getSection()).thenReturn(section1);
    when(section1.getCode()).thenReturn(code);
    when(code.getCode()).thenReturn(APPOINTMENT_CODE);
    when(code.getCodeSystem()).thenReturn(SNOMED);
}