Examples with PositiveIntType org.hl7.fhir.r4.model.PositiveIntType used on opensource projects

Example 11 with PositiveIntType

use of org.hl7.fhir.r4.model.PositiveIntType in project beneficiary-fhir-data by CMSgov.

the class TransformerUtilsV2 method addCareTeamPractitioner.

/**
 * Ensures that the specified {@link ExplanationOfBenefit} has the specified {@link
 * CareTeamComponent}, and links the specified {@link ItemComponent} to that {@link
 * CareTeamComponent} (via {@link ItemComponent#addCareTeamLinkId(int)}).
 *
 * @param eob the {@link ExplanationOfBenefit} that the {@link CareTeamComponent} should be part
 *     of
 * @param eobItem the {@link ItemComponent} that should be linked to the {@link CareTeamComponent}
 * @param practitionerIdSystem the {@link Identifier#getSystem()} of the practitioner to reference
 *     in {@link CareTeamComponent#getProvider()}
 * @param practitionerIdValue the {@link Identifier#getValue()} of the practitioner to reference
 *     in {@link CareTeamComponent#getProvider()}
 * @param careTeamRole the {@link ClaimCareteamrole} to use for the {@link
 *     CareTeamComponent#getRole()}
 * @return the {@link CareTeamComponent} that was created/linked
 */
private static CareTeamComponent addCareTeamPractitioner(ExplanationOfBenefit eob, ItemComponent eobItem, C4BBPractitionerIdentifierType type, String practitionerIdValue, String roleSystem, String roleCode, String roleDisplay) {
    // Try to find a matching pre-existing entry.
    CareTeamComponent careTeamEntry = eob.getCareTeam().stream().filter(ctc -> ctc.getProvider().hasIdentifier()).filter(ctc -> type.getSystem().equals(ctc.getProvider().getIdentifier().getSystem()) && practitionerIdValue.equals(ctc.getProvider().getIdentifier().getValue())).filter(ctc -> ctc.hasRole()).filter(ctc -> roleCode.equals(ctc.getRole().getCodingFirstRep().getCode()) && roleSystem.equals(ctc.getRole().getCodingFirstRep().getSystem())).findAny().orElse(null);
    // <ID Value> => ExplanationOfBenefit.careTeam.provider
    if (careTeamEntry == null) {
        careTeamEntry = eob.addCareTeam();
        // addItem adds and returns, so we want size() not size() + 1 here
        careTeamEntry.setSequence(eob.getCareTeam().size());
        careTeamEntry.setProvider(createPractitionerIdentifierReference(type, practitionerIdValue));
        CodeableConcept careTeamRoleConcept = createCodeableConcept(roleSystem, roleCode);
        careTeamRoleConcept.getCodingFirstRep().setDisplay(roleDisplay);
        careTeamEntry.setRole(careTeamRoleConcept);
    }
    // care team entry is at eob level so no need to create item link id
    if (eobItem == null) {
        return careTeamEntry;
    }
    // ExplanationOfBenefit.careTeam.sequence => ExplanationOfBenefit.item.careTeamSequence
    if (!eobItem.getCareTeamSequence().contains(new PositiveIntType(careTeamEntry.getSequence()))) {
        eobItem.addCareTeamSequence(careTeamEntry.getSequence());
    }
    return careTeamEntry;
}

Example 12 with PositiveIntType

use of org.hl7.fhir.r4.model.PositiveIntType in project beneficiary-fhir-data by CMSgov.

the class McsClaimTransformerV2 method getItems.

private static List<Claim.ItemComponent> getItems(PreAdjMcsClaim claimGroup) {
    return ObjectUtils.defaultIfNull(claimGroup.getDetails(), List.<PreAdjMcsDetail>of()).stream().map(detail -> {
        Claim.ItemComponent item = new Claim.ItemComponent().setSequence(detail.getPriority() + 1).setProductOrService(new CodeableConcept(new Coding(BBCodingSystems.HCPCS, detail.getIdrProcCode(), null))).setServiced(new Period().setStart(localDateToDate(detail.getIdrDtlFromDate())).setEnd(localDateToDate(detail.getIdrDtlToDate()))).setModifier(getModifiers(detail));
        // Set the DiagnosisSequence only if the detail Dx Code is not null and present in the
        // Dx table.
        Optional.ofNullable(detail.getIdrDtlPrimaryDiagCode()).ifPresent(detailDiagnosisCode -> {
            Optional<PreAdjMcsDiagnosisCode> matchingCode = claimGroup.getDiagCodes().stream().filter(diagnosisCode -> codesAreEqual(diagnosisCode.getIdrDiagCode(), detailDiagnosisCode)).findFirst();
            matchingCode.ifPresent(diagnosisCode -> item.setDiagnosisSequence(List.of(new PositiveIntType(diagnosisCode.getPriority() + 1))));
        });
        return item;
    }).sorted(Comparator.comparing(Claim.ItemComponent::getSequence)).collect(Collectors.toList());
}

Example 13 with PositiveIntType

use of org.hl7.fhir.r4.model.PositiveIntType in project openmrs-module-fhir2 by openmrs.

the class ImmunizationTranslatorImpl method toFhirResource.

@Override
public Immunization toFhirResource(@Nonnull Obs openmrsImmunization) {
    if (openmrsImmunization == null) {
        return null;
    }
    Immunization immunization = new Immunization();
    immunization.setId(openmrsImmunization.getUuid());
    immunization.setStatus(ImmunizationStatus.COMPLETED);
    immunization.setPatient(patientReferenceTranslator.toFhirResource(new Patient(openmrsImmunization.getPerson())));
    immunization.setEncounter(visitReferenceTranslator.toFhirResource(openmrsImmunization.getEncounter().getVisit()));
    immunization.setPerformer(Collections.singletonList(new ImmunizationPerformerComponent(practitionerReferenceTranslator.toFhirResource(helper.getAdministeringProvider(openmrsImmunization)))));
    Map<String, Obs> members = helper.getObsMembersMap(openmrsImmunization);
    {
        Obs obs = members.get(CIEL_984);
        if (obs != null) {
            immunization.setVaccineCode(conceptTranslator.toFhirResource(obs.getValueCoded()));
        }
    }
    {
        Obs obs = members.get(CIEL_1410);
        if (obs != null) {
            immunization.setOccurrence(observationValueTranslator.toFhirResource(obs));
        }
    }
    {
        Obs obs = members.get(CIEL_1418);
        if (obs != null && obs.getValueNumeric() != null) {
            immunization.addProtocolApplied(new ImmunizationProtocolAppliedComponent(new PositiveIntType((long) obs.getValueNumeric().doubleValue())));
        }
    }
    {
        Obs obs = members.get(CIEL_1419);
        if (obs != null) {
            immunization.setManufacturer(new Reference().setDisplay(obs.getValueText()));
        }
    }
    {
        Obs obs = members.get(CIEL_1420);
        if (obs != null) {
            immunization.setLotNumber(members.get(CIEL_1420).getValueText());
        }
    }
    {
        Obs obs = members.get(CIEL_165907);
        if (obs != null) {
            immunization.setExpirationDate(obs.getValueDate());
        }
    }
    return immunization;
}

Example 14 with PositiveIntType

use of org.hl7.fhir.r4.model.PositiveIntType in project ab2d by CMSgov.

the class NewFilterLogicTest method makeSureLinksAreNotFilteredOut.

@Test
void makeSureLinksAreNotFilteredOut() {
    ExplanationOfBenefit eob = (ExplanationOfBenefit) EobTestDataUtil.createEOB();
    ExplanationOfBenefit.ItemComponent item = eob.getItem().get(0);
    item.getProcedureLinkId().add(new PositiveIntType(4));
    ExplanationOfBenefit newEob = (ExplanationOfBenefit) ExplanationOfBenefitTrimmerSTU3.getBenefit(eob);
    ExplanationOfBenefit.ItemComponent newItem = newEob.getItem().get(0);
    assertEquals(2, newItem.getCareTeamLinkId().get(0).getValue());
    assertEquals(4, newItem.getProcedureLinkId().get(0).getValue());
    assertEquals(5, newItem.getDiagnosisLinkId().get(0).getValue());
}

Example 15 with PositiveIntType

use of org.hl7.fhir.r4.model.PositiveIntType in project kindling by HL7.

the class OldSpreadsheetParser method processValue.

private DataType processValue(Sheet sheet, int row, String column, String source, ElementDefn e) throws Exception {
    if (Utilities.noString(source))
        return null;
    if (e.getTypes().size() != 1)
        throw new Exception("Unable to process " + column + " unless a single type is specified (types = " + e.typeCode() + ") " + getLocation(row) + ", column = " + column);
    String type = e.typeCode();
    if (definitions != null) {
        if (definitions.getConstraints().containsKey(type))
            type = definitions.getConstraints().get(type).getBaseType();
    } else {
        StructureDefinition sd = context.fetchTypeDefinition(type);
        if (// not loaded yet?
        sd != null)
            type = sd.getType();
        if (type.equals("SimpleQuantity"))
            type = "Quantity";
    }
    if (source.startsWith("{")) {
        JsonParser json = new JsonParser();
        return json.parseType(source, type);
    } else if (source.startsWith("<")) {
        XmlParser xml = new XmlParser();
        return xml.parseType(source, type);
    } else {
        if (source.startsWith("\"") && source.endsWith("\""))
            source = source.substring(1, source.length() - 1);
        if (type.equals("string"))
            return new StringType(source);
        if (type.equals("boolean"))
            return new BooleanType(Boolean.valueOf(source));
        if (type.equals("integer"))
            return new IntegerType(Integer.valueOf(source));
        if (type.equals("integer64"))
            return new Integer64Type(Long.valueOf(source));
        if (type.equals("unsignedInt"))
            return new UnsignedIntType(Integer.valueOf(source));
        if (type.equals("positiveInt"))
            return new PositiveIntType(Integer.valueOf(source));
        if (type.equals("decimal"))
            return new DecimalType(new BigDecimal(source));
        if (type.equals("base64Binary"))
            return new Base64BinaryType(Base64.decode(source.toCharArray()));
        if (type.equals("instant"))
            return new InstantType(source);
        if (type.equals("uri"))
            return new UriType(source);
        if (type.equals("url"))
            return new UrlType(source);
        if (type.equals("canonical"))
            return new CanonicalType(source);
        if (type.equals("date"))
            return new DateType(source);
        if (type.equals("dateTime"))
            return new DateTimeType(source);
        if (type.equals("time"))
            return new TimeType(source);
        if (type.equals("code"))
            return new CodeType(source);
        if (type.equals("oid"))
            return new OidType(source);
        if (type.equals("uuid"))
            return new UuidType(source);
        if (type.equals("id"))
            return new IdType(source);
        if (type.startsWith("Reference(")) {
            Reference r = new Reference();
            r.setReference(source);
            return r;
        }
        if (type.equals("Period")) {
            if (source.contains("->")) {
                String[] parts = source.split("\\-\\>");
                Period p = new Period();
                p.setStartElement(new DateTimeType(parts[0].trim()));
                if (parts.length > 1)
                    p.setEndElement(new DateTimeType(parts[1].trim()));
                return p;
            } else
                throw new Exception("format not understood parsing " + source + " into a period");
        }
        if (type.equals("CodeableConcept")) {
            CodeableConcept cc = new CodeableConcept();
            if (source.contains(":")) {
                String[] parts = source.split("\\:");
                String system = "";
                if (parts[0].equalsIgnoreCase("SCT"))
                    system = "http://snomed.info/sct";
                else if (parts[0].equalsIgnoreCase("LOINC"))
                    system = "http://loinc.org";
                else if (parts[0].equalsIgnoreCase("AMTv2"))
                    system = "http://nehta.gov.au/amtv2";
                else
                    system = "http://hl7.org/fhir/" + parts[0];
                String code = parts[1];
                String display = parts.length > 2 ? parts[2] : null;
                cc.addCoding().setSystem(system).setCode(code).setDisplay(display);
            } else
                throw new Exception("format not understood parsing " + source + " into a codeable concept");
            return cc;
        }
        if (type.equals("Identifier")) {
            Identifier id = new Identifier();
            id.setSystem("urn:ietf:rfc:3986");
            id.setValue(source);
            return id;
        }
        if (type.equals("Quantity")) {
            int s = 0;
            if (source.startsWith("<=") || source.startsWith("=>"))
                s = 2;
            else if (source.startsWith("<") || source.startsWith(">"))
                s = 1;
            int i = s;
            while (i < source.length() && Character.isDigit(source.charAt(i))) i++;
            Quantity q = new Quantity();
            if (s > 0)
                q.setComparator(QuantityComparator.fromCode(source.substring(0, s)));
            if (i > s)
                q.setValue(new BigDecimal(source.substring(s, i)));
            if (i < source.length())
                q.setUnit(source.substring(i).trim());
            return q;
        }
        throw new Exception("Unable to process primitive value '" + source + "' provided for " + column + " - unhandled type " + type + " @ " + getLocation(row));
    }
}