Examples with ConceptSetComponent org.hl7.fhir.r4.model.ValueSet.ConceptSetComponent used on opensource projects

Example 11 with ConceptSetComponent

use of org.hl7.fhir.r4.model.ValueSet.ConceptSetComponent in project org.hl7.fhir.core by hapifhir.

the class BaseWorkerContext method validateCode.

@Override
public ValidationResult validateCode(String system, String code, String display, ConceptSetComponent vsi) {
    try {
        ValueSet vs = new ValueSet().setUrl(Utilities.makeUuidUrn());
        vs.getCompose().addInclude(vsi);
        return verifyCodeExternal(vs, new Coding().setSystem(system).setCode(code).setDisplay(display), true);
    } catch (Exception e) {
        return new ValidationResult(IssueSeverity.FATAL, "Error validating code \"" + code + "\" in system \"" + system + "\": " + e.getMessage());
    }
}

Example 12 with ConceptSetComponent

use of org.hl7.fhir.r4.model.ValueSet.ConceptSetComponent in project org.hl7.fhir.core by hapifhir.

the class BaseWorkerContext method expandVS.

@Override
public ValueSetExpansionComponent expandVS(ConceptSetComponent inc) {
    ValueSet vs = new ValueSet();
    vs.setCompose(new ValueSetComposeComponent());
    vs.getCompose().getInclude().add(inc);
    ValueSetExpansionOutcome vse = expandVS(vs, true);
    return vse.getValueset().getExpansion();
}

Example 13 with ConceptSetComponent

use of org.hl7.fhir.r4.model.ValueSet.ConceptSetComponent in project org.hl7.fhir.core by hapifhir.

the class ValueSetExpanderSimple method includeCodes.

private void includeCodes(ConceptSetComponent inc, List<ValueSetExpansionParameterComponent> params) throws TerminologyServiceException, ETooCostly {
    if (context.supportsSystem(inc.getSystem())) {
        addCodes(context.expandVS(inc), params);
        return;
    }
    ValueSet cs = context.fetchCodeSystem(inc.getSystem());
    if (cs == null)
        throw new TerminologyServiceException("unable to find code system " + inc.getSystem().toString());
    if (cs.hasVersion())
        if (!existsInParams(params, "version", new UriType(cs.getUrl() + "?version=" + cs.getVersion())))
            params.add(new ValueSetExpansionParameterComponent().setName("version").setValue(new UriType(cs.getUrl() + "?version=" + cs.getVersion())));
    if (inc.getConcept().size() == 0 && inc.getFilter().size() == 0) {
        // special case - add all the code system
        for (ConceptDefinitionComponent def : cs.getCodeSystem().getConcept()) {
            addCodeAndDescendents(inc.getSystem(), def);
        }
    }
    for (ConceptReferenceComponent c : inc.getConcept()) {
        addCode(inc.getSystem(), c.getCode(), Utilities.noString(c.getDisplay()) ? getCodeDisplay(cs, c.getCode()) : c.getDisplay());
    }
    if (inc.getFilter().size() > 1)
        // need to and them, and this isn't done yet. But this shouldn't arise in non loinc and snomed value sets
        throw new TerminologyServiceException("Multiple filters not handled yet");
    if (inc.getFilter().size() == 1) {
        ConceptSetFilterComponent fc = inc.getFilter().get(0);
        if ("concept".equals(fc.getProperty()) && fc.getOp() == FilterOperator.ISA) {
            // special: all non-abstract codes in the target code system under the value
            ConceptDefinitionComponent def = getConceptForCode(cs.getCodeSystem().getConcept(), fc.getValue());
            if (def == null)
                throw new TerminologyServiceException("Code '" + fc.getValue() + "' not found in system '" + inc.getSystem() + "'");
            addCodeAndDescendents(inc.getSystem(), def);
        } else
            throw new NotImplementedException("not done yet");
    }
}

Example 14 with ConceptSetComponent

use of org.hl7.fhir.r4.model.ValueSet.ConceptSetComponent in project org.hl7.fhir.core by hapifhir.

the class BaseWorkerContext method validateCode.

@Override
public ValidationResult validateCode(String system, String code, String display, ConceptSetComponent vsi) {
    try {
        ValueSet vs = new ValueSet().setUrl(Utilities.makeUuidUrn());
        vs.getCompose().addInclude(vsi);
        return verifyCodeExternal(vs, new Coding().setSystem(system).setCode(code).setDisplay(display), true);
    } catch (Exception e) {
        return new ValidationResult(IssueSeverity.FATAL, "Error validating code \"" + code + "\" in system \"" + system + "\": " + e.getMessage());
    }
}

Example 15 with ConceptSetComponent

use of org.hl7.fhir.r4.model.ValueSet.ConceptSetComponent in project org.hl7.fhir.core by hapifhir.

the class ValueSetExpanderSimple method includeCodes.

private void includeCodes(ConceptSetComponent inc, List<ValueSetExpansionParameterComponent> params) throws TerminologyServiceException, ETooCostly {
    if (context.supportsSystem(inc.getSystem())) {
        try {
            int i = codes.size();
            addCodes(context.expandVS(inc), params);
            if (codes.size() > i)
                return;
        } catch (Exception e) {
        // ok, we'll try locally
        }
    }
    CodeSystem cs = context.fetchCodeSystem(inc.getSystem());
    if (cs == null)
        throw new TerminologyServiceException("unable to find code system " + inc.getSystem().toString());
    if (cs.hasVersion())
        if (!existsInParams(params, "version", new UriType(cs.getUrl() + "?version=" + cs.getVersion())))
            params.add(new ValueSetExpansionParameterComponent().setName("version").setValue(new UriType(cs.getUrl() + "?version=" + cs.getVersion())));
    if (inc.getConcept().size() == 0 && inc.getFilter().size() == 0) {
        // special case - add all the code system
        for (ConceptDefinitionComponent def : cs.getConcept()) {
            addCodeAndDescendents(cs, inc.getSystem(), def);
        }
    }
    for (ConceptReferenceComponent c : inc.getConcept()) {
        addCode(inc.getSystem(), c.getCode(), Utilities.noString(c.getDisplay()) ? getCodeDisplay(cs, c.getCode()) : c.getDisplay());
    }
    if (inc.getFilter().size() > 1)
        // need to and them, and this isn't done yet. But this shouldn't arise in non loinc and snomed value sets
        throw new TerminologyServiceException("Multiple filters not handled yet");
    if (inc.getFilter().size() == 1) {
        ConceptSetFilterComponent fc = inc.getFilter().get(0);
        if ("concept".equals(fc.getProperty()) && fc.getOp() == FilterOperator.ISA) {
            // special: all non-abstract codes in the target code system under the value
            ConceptDefinitionComponent def = getConceptForCode(cs.getConcept(), fc.getValue());
            if (def == null)
                throw new TerminologyServiceException("Code '" + fc.getValue() + "' not found in system '" + inc.getSystem() + "'");
            addCodeAndDescendents(cs, inc.getSystem(), def);
        } else
            throw new NotImplementedException("not done yet");
    }
}