use of org.hl7.fhir.r4.model.ValueSet.ConceptSetComponent in project org.hl7.fhir.core by hapifhir.
the class ProfileComparer method intersectByExpansion.
private ValueSet intersectByExpansion(ValueSet lvs, ValueSet rvs) {
// this is pretty straight forward - we intersect the lists, and build a compose out of the intersection
ValueSet vs = new ValueSet();
vs.setStatus(ConformanceResourceStatus.DRAFT);
Map<String, ValueSetExpansionContainsComponent> left = new HashMap<String, ValueSetExpansionContainsComponent>();
scan(lvs.getExpansion().getContains(), left);
Map<String, ValueSetExpansionContainsComponent> right = new HashMap<String, ValueSetExpansionContainsComponent>();
scan(rvs.getExpansion().getContains(), right);
Map<String, ConceptSetComponent> inc = new HashMap<String, ConceptSetComponent>();
for (String s : left.keySet()) {
if (right.containsKey(s)) {
ValueSetExpansionContainsComponent cc = left.get(s);
ConceptSetComponent c = inc.get(cc.getSystem());
if (c == null) {
c = vs.getCompose().addInclude().setSystem(cc.getSystem());
inc.put(cc.getSystem(), c);
}
c.addConcept().setCode(cc.getCode()).setDisplay(cc.getDisplay());
}
}
return vs;
}
use of org.hl7.fhir.r4.model.ValueSet.ConceptSetComponent in project org.hl7.fhir.core by hapifhir.
the class ProfileComparer method intersectByExpansion.
private ValueSet intersectByExpansion(ValueSet lvs, ValueSet rvs) {
// this is pretty straight forward - we intersect the lists, and build a compose out of the intersection
ValueSet vs = new ValueSet();
vs.setStatus(ConformanceResourceStatus.DRAFT);
Map<String, ValueSetExpansionContainsComponent> left = new HashMap<String, ValueSetExpansionContainsComponent>();
scan(lvs.getExpansion().getContains(), left);
Map<String, ValueSetExpansionContainsComponent> right = new HashMap<String, ValueSetExpansionContainsComponent>();
scan(rvs.getExpansion().getContains(), right);
Map<String, ConceptSetComponent> inc = new HashMap<String, ConceptSetComponent>();
for (String s : left.keySet()) {
if (right.containsKey(s)) {
ValueSetExpansionContainsComponent cc = left.get(s);
ConceptSetComponent c = inc.get(cc.getSystem());
if (c == null) {
c = vs.getCompose().addInclude().setSystem(cc.getSystem());
inc.put(cc.getSystem(), c);
}
c.addConcept().setCode(cc.getCode()).setDisplay(cc.getDisplay());
}
}
return vs;
}
use of org.hl7.fhir.r4.model.ValueSet.ConceptSetComponent in project org.hl7.fhir.core by hapifhir.
the class NarrativeGenerator method genInclude.
private boolean genInclude(ResourceContext rcontext, XhtmlNode ul, ConceptSetComponent inc, String type, List<String> langs) throws FHIRException {
boolean hasExtensions = false;
XhtmlNode li;
li = ul.li();
CodeSystem e = context.fetchCodeSystem(inc.getSystem());
if (inc.hasSystem()) {
if (inc.getConcept().size() == 0 && inc.getFilter().size() == 0) {
li.addText(type + " all codes defined in ");
addCsRef(inc, li, e);
} else {
if (inc.getConcept().size() > 0) {
li.addText(type + " these codes as defined in ");
addCsRef(inc, li, e);
XhtmlNode t = li.table("none");
boolean hasComments = false;
boolean hasDefinition = false;
for (ConceptReferenceComponent c : inc.getConcept()) {
hasComments = hasComments || ExtensionHelper.hasExtension(c, ToolingExtensions.EXT_VS_COMMENT);
hasDefinition = hasDefinition || ExtensionHelper.hasExtension(c, ToolingExtensions.EXT_DEFINITION);
}
if (hasComments || hasDefinition)
hasExtensions = true;
addTableHeaderRowStandard(t, false, true, hasDefinition, hasComments, false);
for (ConceptReferenceComponent c : inc.getConcept()) {
XhtmlNode tr = t.tr();
XhtmlNode td = tr.td();
ConceptDefinitionComponent cc = getConceptForCode(e, c.getCode(), inc);
addCodeToTable(false, inc.getSystem(), c.getCode(), c.hasDisplay() ? c.getDisplay() : cc != null ? cc.getDisplay() : "", td);
td = tr.td();
if (!Utilities.noString(c.getDisplay()))
td.addText(c.getDisplay());
else if (cc != null && !Utilities.noString(cc.getDisplay()))
td.addText(cc.getDisplay());
td = tr.td();
if (ExtensionHelper.hasExtension(c, ToolingExtensions.EXT_DEFINITION))
smartAddText(td, ToolingExtensions.readStringExtension(c, ToolingExtensions.EXT_DEFINITION));
else if (cc != null && !Utilities.noString(cc.getDefinition()))
smartAddText(td, cc.getDefinition());
if (ExtensionHelper.hasExtension(c, ToolingExtensions.EXT_VS_COMMENT)) {
smartAddText(tr.td(), "Note: " + ToolingExtensions.readStringExtension(c, ToolingExtensions.EXT_VS_COMMENT));
}
for (ConceptReferenceDesignationComponent cd : c.getDesignation()) {
if (cd.hasLanguage() && !langs.contains(cd.getLanguage()))
langs.add(cd.getLanguage());
}
}
}
boolean first = true;
for (ConceptSetFilterComponent f : inc.getFilter()) {
if (first) {
li.addText(type + " codes from ");
first = false;
} else
li.tx(" and ");
addCsRef(inc, li, e);
li.tx(" where " + f.getProperty() + " " + describe(f.getOp()) + " ");
if (e != null && codeExistsInValueSet(e, f.getValue())) {
String href = prefix + getCsRef(e);
if (href.contains("#"))
href = href + "-" + Utilities.nmtokenize(f.getValue());
else
href = href + "#" + e.getId() + "-" + Utilities.nmtokenize(f.getValue());
li.ah(href).addText(f.getValue());
} else if ("concept".equals(f.getProperty()) && inc.hasSystem()) {
li.addText(f.getValue());
ValidationResult vr = context.validateCode(inc.getSystem(), f.getValue(), null);
if (vr.isOk()) {
li.tx(" (" + vr.getDisplay() + ")");
}
} else
li.addText(f.getValue());
String disp = ToolingExtensions.getDisplayHint(f);
if (disp != null)
li.tx(" (" + disp + ")");
}
}
if (inc.hasValueSet()) {
li.tx(", where the codes are contained in ");
boolean first = true;
for (UriType vs : inc.getValueSet()) {
if (first)
first = false;
else
li.tx(", ");
AddVsRef(rcontext, vs.asStringValue(), li);
}
}
} else {
li = ul.li();
li.tx("Import all the codes that are contained in ");
boolean first = true;
for (UriType vs : inc.getValueSet()) {
if (first)
first = false;
else
li.tx(", ");
AddVsRef(rcontext, vs.asStringValue(), li);
}
}
return hasExtensions;
}
use of org.hl7.fhir.r4.model.ValueSet.ConceptSetComponent in project org.hl7.fhir.core by hapifhir.
the class ValueSetExpanderSimple method doServerIncludeCodes.
private void doServerIncludeCodes(ConceptSetComponent inc, boolean heirarchical, List<ValueSetExpansionParameterComponent> params, List<ValueSet> imports, Parameters expParams) throws FHIRException {
ValueSetExpansionOutcome vso = context.expandVS(inc, heirarchical);
if (vso.getError() != null)
throw new TerminologyServiceException("Unable to expand imported value set: " + vso.getError());
ValueSet vs = vso.getValueset();
if (vs.hasVersion())
if (!existsInParams(params, "version", new UriType(vs.getUrl() + "|" + vs.getVersion())))
params.add(new ValueSetExpansionParameterComponent().setName("version").setValue(new UriType(vs.getUrl() + "|" + vs.getVersion())));
for (ValueSetExpansionParameterComponent p : vso.getValueset().getExpansion().getParameter()) {
if (!existsInParams(params, p.getName(), p.getValue()))
params.add(p);
}
for (ValueSetExpansionContainsComponent cc : vs.getExpansion().getContains()) {
addCodeAndDescendents(cc, null, expParams, imports);
}
}
use of org.hl7.fhir.r4.model.ValueSet.ConceptSetComponent in project org.hl7.fhir.core by hapifhir.
the class ValueSetExpanderSimple method includeCodes.
private void includeCodes(ConceptSetComponent inc, List<ValueSetExpansionParameterComponent> params, Parameters expParams, boolean heirarchical) throws ETooCostly, FileNotFoundException, IOException, FHIRException {
inc.checkNoModifiers("Compose.include", "expanding");
List<ValueSet> imports = new ArrayList<ValueSet>();
for (UriType imp : inc.getValueSet()) {
imports.add(importValueSet(imp.getValue(), params, expParams));
}
if (!inc.hasSystem()) {
if (// though this is not supposed to be the case
imports.isEmpty())
return;
ValueSet base = imports.get(0);
imports.remove(0);
base.checkNoModifiers("Imported ValueSet", "expanding");
copyImportContains(base.getExpansion().getContains(), null, expParams, imports);
} else {
CodeSystem cs = context.fetchCodeSystem(inc.getSystem());
if ((cs == null || cs.getContent() != CodeSystemContentMode.COMPLETE)) {
doServerIncludeCodes(inc, heirarchical, params, imports, expParams);
} else {
doInternalIncludeCodes(inc, params, expParams, imports, cs);
}
}
}
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