Examples with ConceptSetComponent org.hl7.fhir.r4.model.ValueSet.ConceptSetComponent used on opensource projects

Example 46 with ConceptSetComponent

use of org.hl7.fhir.r4.model.ValueSet.ConceptSetComponent in project org.hl7.fhir.core by hapifhir.

the class ValueSetComparer method compareCompose.

private void compareCompose(ValueSetComposeComponent left, ValueSetComposeComponent right, ValueSetComparison res, ValueSetComposeComponent union, ValueSetComposeComponent intersection) {
    // first, the includes
    List<ConceptSetComponent> matchR = new ArrayList<>();
    for (ConceptSetComponent l : left.getInclude()) {
        ConceptSetComponent r = findInList(right.getInclude(), l, left.getInclude());
        if (r == null) {
            union.getInclude().add(l);
            res.getIncludes().getChildren().add(new StructuralMatch<Element>(l, vmI(IssueSeverity.INFORMATION, "Removed Include", "ValueSet.compose.include")));
        } else {
            matchR.add(r);
            ConceptSetComponent csM = new ConceptSetComponent();
            ConceptSetComponent csI = new ConceptSetComponent();
            union.getInclude().add(csM);
            intersection.getInclude().add(csI);
            StructuralMatch<Element> sm = new StructuralMatch<Element>(l, r);
            res.getIncludes().getChildren().add(sm);
            compareDefinitions(l, r, sm, csM, csI);
        }
    }
    for (ConceptSetComponent r : right.getInclude()) {
        if (!matchR.contains(r)) {
            union.getInclude().add(r);
            res.getIncludes().getChildren().add(new StructuralMatch<Element>(vmI(IssueSeverity.INFORMATION, "Added Include", "ValueSet.compose.include"), r));
        }
    }
    // now. the excludes
    matchR.clear();
    for (ConceptSetComponent l : left.getExclude()) {
        ConceptSetComponent r = findInList(right.getExclude(), l, left.getExclude());
        if (r == null) {
            union.getExclude().add(l);
            res.getExcludes().getChildren().add(new StructuralMatch<Element>(l, vmI(IssueSeverity.INFORMATION, "Removed Exclude", "ValueSet.compose.exclude")));
        } else {
            matchR.add(r);
            ConceptSetComponent csM = new ConceptSetComponent();
            ConceptSetComponent csI = new ConceptSetComponent();
            union.getExclude().add(csM);
            intersection.getExclude().add(csI);
            StructuralMatch<Element> sm = new StructuralMatch<Element>(l, r);
            res.getExcludes().getChildren().add(sm);
            compareDefinitions(l, r, sm, csM, csI);
        }
    }
    for (ConceptSetComponent r : right.getExclude()) {
        if (!matchR.contains(r)) {
            union.getExclude().add(r);
            res.getExcludes().getChildren().add(new StructuralMatch<Element>(vmI(IssueSeverity.INFORMATION, "Added Exclude", "ValueSet.compose.exclude"), r));
        }
    }
}

Example 47 with ConceptSetComponent

use of org.hl7.fhir.r4.model.ValueSet.ConceptSetComponent in project org.hl7.fhir.core by hapifhir.

the class NarrativeGenerator method generateComposition.

private boolean generateComposition(ResourceContext rcontext, XhtmlNode x, ValueSet vs, boolean header) throws FHIRException, IOException {
    boolean hasExtensions = false;
    List<String> langs = new ArrayList<String>();
    if (header) {
        XhtmlNode h = x.h2();
        h.addText(vs.getName());
        addMarkdown(x, vs.getDescription());
        if (vs.hasCopyrightElement())
            generateCopyright(x, vs);
    }
    XhtmlNode p = x.para();
    p.tx("This value set includes codes from the following code systems:");
    XhtmlNode ul = x.ul();
    XhtmlNode li;
    for (ConceptSetComponent inc : vs.getCompose().getInclude()) {
        hasExtensions = genInclude(rcontext, ul, inc, "Include", langs) || hasExtensions;
    }
    for (ConceptSetComponent exc : vs.getCompose().getExclude()) {
        hasExtensions = genInclude(rcontext, ul, exc, "Exclude", langs) || hasExtensions;
    }
    if (langs.size() > 0) {
        Collections.sort(langs);
        x.para().b().tx("Additional Language Displays");
        XhtmlNode t = x.table("codes");
        XhtmlNode tr = t.tr();
        tr.td().b().tx("Code");
        for (String lang : langs) tr.td().b().addText(describeLang(lang));
        for (ConceptSetComponent c : vs.getCompose().getInclude()) {
            for (ConceptReferenceComponent cc : c.getConcept()) {
                addLanguageRow(cc, t, langs);
            }
        }
    }
    return hasExtensions;
}

Example 48 with ConceptSetComponent

use of org.hl7.fhir.r4.model.ValueSet.ConceptSetComponent in project org.hl7.fhir.core by hapifhir.

the class BaseWorkerContext method expandVS.

@Override
public ValueSetExpansionOutcome expandVS(ConceptSetComponent inc, boolean heirachical) throws TerminologyServiceException {
    ValueSet vs = new ValueSet();
    vs.setCompose(new ValueSetComposeComponent());
    vs.getCompose().getInclude().add(inc);
    CacheToken cacheToken = txCache.generateExpandToken(vs, heirachical);
    ValueSetExpansionOutcome res;
    res = txCache.getExpansion(cacheToken);
    if (res != null)
        return res;
    Parameters p = expParameters.copy();
    p.setParameter("includeDefinition", false);
    p.setParameter("excludeNested", !heirachical);
    if (noTerminologyServer)
        return new ValueSetExpansionOutcome("Error expanding ValueSet: running without terminology services", TerminologyServiceErrorClass.NOSERVICE);
    Map<String, String> params = new HashMap<String, String>();
    params.put("_limit", Integer.toString(expandCodesLimit));
    params.put("_incomplete", "true");
    tlog("$expand on " + txCache.summary(vs));
    try {
        ValueSet result = txClient.expandValueset(vs, p, params);
        res = new ValueSetExpansionOutcome(result).setTxLink(txLog.getLastId());
    } catch (Exception e) {
        res = new ValueSetExpansionOutcome(e.getMessage() == null ? e.getClass().getName() : e.getMessage(), TerminologyServiceErrorClass.UNKNOWN);
        if (txLog != null)
            res.setTxLink(txLog.getLastId());
    }
    txCache.cacheExpansion(cacheToken, res, TerminologyCache.PERMANENT);
    return res;
}

Example 49 with ConceptSetComponent

use of org.hl7.fhir.r4.model.ValueSet.ConceptSetComponent in project org.hl7.fhir.core by hapifhir.

the class TerminologyCache method getIncSummary.

private String getIncSummary(ConceptSetComponent cc) {
    CommaSeparatedStringBuilder b = new CommaSeparatedStringBuilder();
    for (UriType vs : cc.getValueSet()) b.append(vs.asStringValue());
    String vsd = b.length() > 0 ? " where the codes are in the value sets (" + b.toString() + ")" : "";
    String system = cc.getSystem();
    if (cc.hasConcept())
        return Integer.toString(cc.getConcept().size()) + " codes from " + system + vsd;
    if (cc.hasFilter()) {
        String s = "";
        for (ConceptSetFilterComponent f : cc.getFilter()) {
            if (!Utilities.noString(s))
                s = s + " & ";
            s = s + f.getProperty() + " " + f.getOp().toCode() + " " + f.getValue();
        }
        return "from " + system + " where " + s + vsd;
    }
    return "All codes from " + system + vsd;
}

Example 50 with ConceptSetComponent

use of org.hl7.fhir.r4.model.ValueSet.ConceptSetComponent in project org.hl7.fhir.core by hapifhir.

the class NarrativeGenerator method addCsRef.

private <T extends Resource> void addCsRef(ConceptSetComponent inc, XhtmlNode li, T cs) {
    String ref = null;
    boolean addHtml = true;
    if (cs != null) {
        ref = (String) cs.getUserData("external.url");
        if (Utilities.noString(ref))
            ref = (String) cs.getUserData("filename");
        else
            addHtml = false;
        if (Utilities.noString(ref))
            ref = (String) cs.getUserData("path");
    }
    String spec = getSpecialReference(inc.getSystem());
    if (spec != null) {
        XhtmlNode a = li.ah(spec);
        a.code(inc.getSystem());
    } else if (cs != null && ref != null) {
        if (!Utilities.noString(prefix) && ref.startsWith("http://hl7.org/fhir/"))
            ref = ref.substring(20) + "/index.html";
        else if (addHtml && !ref.contains(".html"))
            ref = ref + ".html";
        XhtmlNode a = li.ah(prefix + ref.replace("\\", "/"));
        a.code(inc.getSystem());
    } else {
        li.code(inc.getSystem());
    }
}