Examples with ConceptSetComponent org.hl7.fhir.r4.model.ValueSet.ConceptSetComponent used on opensource projects

Example 71 with ConceptSetComponent

use of org.hl7.fhir.r4.model.ValueSet.ConceptSetComponent in project bunsen by cerner.

the class ValueSetsTest method checkValueSet.

private static void checkValueSet(ValueSet valueSet, String url, String version) {
    Assert.assertNotNull(MessageFormat.format("Could not find value set for url {0} and version {1}", url, version), valueSet);
    Assert.assertEquals(url, valueSet.getUrl());
    Assert.assertEquals(version, valueSet.getVersion());
    ConceptSetComponent inclusion = valueSet.getCompose().getIncludeFirstRep();
    Assert.assertEquals("urn:cerner:system", inclusion.getSystem());
    Assert.assertEquals("1", inclusion.getVersion());
    Assert.assertEquals("a", inclusion.getConceptFirstRep().getCode());
    Assert.assertEquals(1, valueSet.getCompose().getInclude().size());
}

Example 72 with ConceptSetComponent

use of org.hl7.fhir.r4.model.ValueSet.ConceptSetComponent in project bunsen by cerner.

the class ValueSets method expandValuesIterator.

private static Iterator<Value> expandValuesIterator(ValueSet valueSet) {
    List<Value> values = new ArrayList<>();
    ValueSetComposeComponent compose = valueSet.getCompose();
    for (ConceptSetComponent inclusion : compose.getInclude()) {
        for (ConceptReferenceComponent concept : inclusion.getConcept()) {
            Value value = new Value();
            value.setValueSetUri(valueSet.getUrl());
            value.setValueSetVersion(valueSet.getVersion());
            value.setSystem(inclusion.getSystem());
            value.setVersion(inclusion.getVersion());
            value.setValue(concept.getCode());
            values.add(value);
        }
    }
    return values.iterator();
}

Example 73 with ConceptSetComponent

use of org.hl7.fhir.r4.model.ValueSet.ConceptSetComponent in project bunsen by cerner.

the class ValueSetsTest method valueSet.

private static ValueSet valueSet(String valueSetUrl, String valueSetVersion, String... codes) {
    ValueSet valueSet = new ValueSet();
    valueSet.setUrl(valueSetUrl);
    valueSet.setVersion(valueSetVersion);
    valueSet.setExperimental(true);
    ConceptSetComponent inclusion = valueSet.getCompose().addInclude();
    inclusion.setSystem("urn:cerner:system").setVersion("1");
    for (String code : codes) {
        inclusion.addConcept().setCode(code);
    }
    return valueSet;
}

Example 74 with ConceptSetComponent

use of org.hl7.fhir.r4.model.ValueSet.ConceptSetComponent in project bunsen by cerner.

the class ValueSets method addToValueSet.

@Override
protected void addToValueSet(ValueSet valueSet, Dataset<Value> values) {
    ValueSetComposeComponent composeComponent = valueSet.getCompose();
    ConceptSetComponent currentInclusion = null;
    ConceptReferenceComponent concept = null;
    List<Value> sortedValues = values.sort("system", "version", "value").collectAsList();
    // Workaround for the decoder producing an immutable array by replacing it with a mutable one
    composeComponent.setInclude(new ArrayList<>(composeComponent.getInclude()));
    for (Value value : sortedValues) {
        if (currentInclusion == null || !value.getSystem().equals(currentInclusion.getSystem()) || !value.getVersion().equals(currentInclusion.getVersion())) {
            // Find a matching inclusion
            for (ConceptSetComponent candidate : composeComponent.getInclude()) {
                if (value.getSystem().equals(candidate.getSystem()) && value.getVersion().equals(candidate.getVersion())) {
                    currentInclusion = candidate;
                    // Workaround for the decoder producing an immutable array by replacing it with a
                    // mutable one
                    currentInclusion.setConcept(new ArrayList<>(currentInclusion.getConcept()));
                }
            }
            // No matching inclusion found, so add one
            if (currentInclusion == null) {
                currentInclusion = composeComponent.addInclude();
                currentInclusion.setSystem(value.getSystem());
                currentInclusion.setVersion(value.getVersion());
                concept = null;
            }
        }
        // Create concept if not exists
        if (concept == null || !value.getValue().equals(concept.getCode())) {
            concept = currentInclusion.addConcept();
            concept.setCode(value.getValue());
        }
    }
}

Example 75 with ConceptSetComponent

use of org.hl7.fhir.r4.model.ValueSet.ConceptSetComponent in project snowstorm by IHTSDO.

the class FHIRHelper method convertFilterToECL.

public String convertFilterToECL(ConceptSetComponent setDefn, boolean firstItem) throws FHIROperationException {
    StringBuilder eclBuilder = new StringBuilder();
    for (ConceptSetFilterComponent filter : setDefn.getFilter()) {
        if (firstItem) {
            firstItem = false;
        } else {
            eclBuilder.append(" OR ");
        }
        if (filter.getProperty().equals("concept")) {
            eclBuilder.append(convertOperationToECL(filter.getOp()));
            eclBuilder.append(filter.getValue());
        } else if (filter.getProperty().equals("constraint")) {
            if (filter.getOp().toCode() != "=") {
                throw new FHIROperationException(IssueType.NOTSUPPORTED, "ValueSet compose filter 'constaint' operation - only '=' currently implemented");
            }
            eclBuilder.append(filter.getValue());
        } else {
            throw new FHIROperationException(IssueType.NOTSUPPORTED, "ValueSet compose filter property - only 'concept' and 'constraint' currently implemented");
        }
    }
    return eclBuilder.toString();
}