Examples with ConceptSetComponent org.hl7.fhir.r4.model.ValueSet.ConceptSetComponent used on opensource projects

Example 66 with ConceptSetComponent

use of org.hl7.fhir.r4.model.ValueSet.ConceptSetComponent in project bunsen by cerner.

the class ValueSets method addToValueSet.

@Override
protected void addToValueSet(ValueSet valueSet, Dataset<Value> values) {
    ValueSetComposeComponent composeComponent = valueSet.getCompose();
    ConceptSetComponent currentInclusion = null;
    ConceptReferenceComponent concept = null;
    List<Value> sortedValues = values.sort("system", "version", "value").collectAsList();
    // Workaround for the decoder producing an immutable array by replacing it with a mutable one
    composeComponent.setInclude(new ArrayList<>(composeComponent.getInclude()));
    for (Value value : sortedValues) {
        if (currentInclusion == null || !value.getSystem().equals(currentInclusion.getSystem()) || !value.getVersion().equals(currentInclusion.getVersion())) {
            // Find a matching inclusion
            for (ConceptSetComponent candidate : composeComponent.getInclude()) {
                if (value.getSystem().equals(candidate.getSystem()) && value.getVersion().equals(candidate.getVersion())) {
                    currentInclusion = candidate;
                    // Workaround for the decoder producing an immutable array by replacing it with a
                    // mutable one
                    currentInclusion.setConcept(new ArrayList<>(currentInclusion.getConcept()));
                }
            }
            // No matching inclusion found, so add one
            if (currentInclusion == null) {
                currentInclusion = composeComponent.addInclude();
                currentInclusion.setSystem(value.getSystem());
                currentInclusion.setVersion(value.getVersion());
                concept = null;
            }
        }
        // Create concept if not exists
        if (concept == null || !value.getValue().equals(concept.getCode())) {
            concept = currentInclusion.addConcept();
            concept.setCode(value.getValue());
        }
    }
}

Example 67 with ConceptSetComponent

use of org.hl7.fhir.r4.model.ValueSet.ConceptSetComponent in project bunsen by cerner.

the class ValueSetsTest method checkValueSet.

private static void checkValueSet(ValueSet valueSet, String url, String version) {
    Assert.assertNotNull(MessageFormat.format("Could not find value set for url {0} and version {1}", url, version), valueSet);
    Assert.assertEquals(url, valueSet.getUrl());
    Assert.assertEquals(version, valueSet.getVersion());
    ConceptSetComponent inclusion = valueSet.getCompose().getIncludeFirstRep();
    Assert.assertEquals("urn:cerner:system", inclusion.getSystem());
    Assert.assertEquals("1", inclusion.getVersion());
    Assert.assertEquals("a", inclusion.getConceptFirstRep().getCode());
    Assert.assertEquals(1, valueSet.getCompose().getInclude().size());
}

Example 68 with ConceptSetComponent

use of org.hl7.fhir.r4.model.ValueSet.ConceptSetComponent in project bunsen by cerner.

the class ValueSetsTest method valueSet.

private static ValueSet valueSet(String valueSetUrl, String valueSetVersion, String... codes) {
    ValueSet valueSet = new ValueSet();
    valueSet.setUrl(valueSetUrl);
    valueSet.setVersion(valueSetVersion);
    valueSet.setExperimental(true);
    ConceptSetComponent inclusion = valueSet.getCompose().addInclude();
    inclusion.setSystem("urn:cerner:system").setVersion("1");
    for (String code : codes) {
        inclusion.addConcept().setCode(code);
    }
    return valueSet;
}

Example 69 with ConceptSetComponent

use of org.hl7.fhir.r4.model.ValueSet.ConceptSetComponent in project bunsen by cerner.

the class ValueSets method expandValuesIterator.

private static Iterator<Value> expandValuesIterator(ValueSet valueSet) {
    List<Value> values = new ArrayList<>();
    ValueSetComposeComponent compose = valueSet.getCompose();
    for (ConceptSetComponent inclusion : compose.getInclude()) {
        for (ConceptReferenceComponent concept : inclusion.getConcept()) {
            Value value = new Value();
            value.setValueSetUri(valueSet.getUrl());
            value.setValueSetVersion(valueSet.getVersion());
            value.setSystem(inclusion.getSystem());
            value.setVersion(inclusion.getVersion());
            value.setValue(concept.getCode());
            values.add(value);
        }
    }
    return values.iterator();
}

Example 70 with ConceptSetComponent

use of org.hl7.fhir.r4.model.ValueSet.ConceptSetComponent in project synthea by synthetichealth.

the class ValidationSupportR4 method validateCodeUsingValueSet.

private CodeValidationResult validateCodeUsingValueSet(String theCodeSystem, String theCode, String theDisplay, String theValueSetUrl) {
    CodeValidationResult result = null;
    if (theValueSetUrl == null || theValueSetUrl.isEmpty()) {
        result = new CodeValidationResult();
        result.setCode(theCode);
        result.setDisplay(theDisplay);
        result.setMessage("No ValueSet!");
        result.setSeverity(IssueSeverity.FATAL);
    } else {
        ValueSet vs = (ValueSet) this.fetchValueSet(theValueSetUrl);
        if (vs.hasCompose()) {
            ValueSetComposeComponent vscc = vs.getCompose();
            if (vscc.hasInclude()) {
                for (ConceptSetComponent csc : vscc.getInclude()) {
                    if ((theCodeSystem == null || (theCodeSystem != null && theCodeSystem.equals(csc.getSystem())))) {
                        for (ConceptReferenceComponent crc : csc.getConcept()) {
                            if (crc.hasCode() && crc.getCode().equals(theCode)) {
                                result = new CodeValidationResult();
                                result.setCode(theCode);
                                result.setDisplay(theDisplay);
                                result.setMessage("Included");
                                result.setSeverity(IssueSeverity.INFORMATION);
                            }
                        }
                    }
                }
            }
            if (result == null && vscc.hasExclude()) {
                for (ConceptSetComponent csc : vscc.getExclude()) {
                    if ((theCodeSystem == null || (theCodeSystem != null && theCodeSystem.equals(csc.getSystem())))) {
                        for (ConceptReferenceComponent crc : csc.getConcept()) {
                            if (crc.hasCode() && crc.getCode().equals(theCode)) {
                                result = new CodeValidationResult();
                                result.setCode(theCode);
                                result.setDisplay(theDisplay);
                                result.setMessage("Excluded");
                                result.setSeverity(IssueSeverity.ERROR);
                            }
                        }
                    }
                }
            }
        }
        if (result == null && vs.hasExpansion()) {
            ValueSetExpansionComponent vsec = vs.getExpansion();
            if (vsec.hasContains()) {
                for (ValueSetExpansionContainsComponent vsecc : vsec.getContains()) {
                    if (theCodeSystem == null || (theCodeSystem != null && theCodeSystem.equals(vsecc.getSystem()))) {
                        if (vsecc.getCode().equals(theCode)) {
                            result = new CodeValidationResult();
                            result.setCode(theCode);
                            result.setDisplay(theDisplay);
                            result.setMessage("Included");
                            result.setSeverity(IssueSeverity.INFORMATION);
                        }
                    }
                }
            }
        }
    }
    return result;
}