Examples with ConceptSetComponent org.hl7.fhir.r4.model.ValueSet.ConceptSetComponent used on opensource projects

Example 51 with ConceptSetComponent

use of org.hl7.fhir.r4.model.ValueSet.ConceptSetComponent in project org.hl7.fhir.core by hapifhir.

the class NarrativeGenerator method countMembership.

private Integer countMembership(ValueSet vs) {
    int count = 0;
    if (vs.hasExpansion())
        count = count + conceptCount(vs.getExpansion().getContains());
    else {
        if (vs.hasCompose()) {
            if (vs.getCompose().hasExclude()) {
                try {
                    ValueSetExpansionOutcome vse = context.expandVS(vs, true, false);
                    count = 0;
                    count += conceptCount(vse.getValueset().getExpansion().getContains());
                    return count;
                } catch (Exception e) {
                    return null;
                }
            }
            for (ConceptSetComponent inc : vs.getCompose().getInclude()) {
                if (inc.hasFilter())
                    return null;
                if (!inc.hasConcept())
                    return null;
                count = count + inc.getConcept().size();
            }
        }
    }
    return count;
}

Example 52 with ConceptSetComponent

use of org.hl7.fhir.r4.model.ValueSet.ConceptSetComponent in project org.hl7.fhir.core by hapifhir.

the class ValueSetExpanderSimple method doServerIncludeCodes.

private void doServerIncludeCodes(ConceptSetComponent inc, boolean heirarchical, ValueSetExpansionComponent exp, List<ValueSet> imports, Parameters expParams, List<Extension> extensions) throws FHIRException {
    ValueSetExpansionOutcome vso = context.expandVS(inc, heirarchical);
    if (vso.getError() != null) {
        throw failTSE("Unable to expand imported value set: " + vso.getError());
    }
    ValueSet vs = vso.getValueset();
    if (vs.hasVersion()) {
        if (!existsInParams(exp.getParameter(), "version", new UriType(vs.getUrl() + "|" + vs.getVersion()))) {
            exp.getParameter().add(new ValueSetExpansionParameterComponent().setName("version").setValue(new UriType(vs.getUrl() + "|" + vs.getVersion())));
        }
    }
    for (ValueSetExpansionParameterComponent p : vso.getValueset().getExpansion().getParameter()) {
        if (!existsInParams(exp.getParameter(), p.getName(), p.getValue())) {
            exp.getParameter().add(p);
        }
    }
    for (Extension ex : vs.getExpansion().getExtension()) {
        if (Utilities.existsInList(ex.getUrl(), ToolingExtensions.EXT_EXP_TOOCOSTLY, "http://hl7.org/fhir/StructureDefinition/valueset-unclosed")) {
            if (!hasExtension(extensions, ex.getUrl())) {
                extensions.add(ex);
            }
        }
    }
    for (ValueSetExpansionContainsComponent cc : vs.getExpansion().getContains()) {
        addCodeAndDescendents(cc, null, expParams, imports);
    }
}

Example 53 with ConceptSetComponent

use of org.hl7.fhir.r4.model.ValueSet.ConceptSetComponent in project org.hl7.fhir.core by hapifhir.

the class ValueSetExpanderSimple method excludeCodes.

private void excludeCodes(ConceptSetComponent exc, List<ValueSetExpansionParameterComponent> params, String ctxt) throws FHIRException {
    exc.checkNoModifiers("Compose.exclude", "expanding");
    if (exc.hasSystem() && exc.getConcept().size() == 0 && exc.getFilter().size() == 0) {
        excludeSystems.add(exc.getSystem());
    }
    if (exc.hasValueSet())
        throw fail("Processing Value set references in exclude is not yet done in " + ctxt);
    // importValueSet(imp.getValue(), params, expParams);
    CodeSystem cs = context.fetchCodeSystem(exc.getSystem());
    if ((cs == null || cs.getContent() != CodeSystemContentMode.COMPLETE) && context.supportsSystem(exc.getSystem())) {
        ValueSetExpansionOutcome vse = context.expandVS(exc, false);
        ValueSet valueset = vse.getValueset();
        if (valueset == null)
            throw failTSE("Error Expanding ValueSet: " + vse.getError());
        excludeCodes(valueset.getExpansion(), params);
        return;
    }
    for (ConceptReferenceComponent c : exc.getConcept()) {
        excludeCode(exc.getSystem(), c.getCode());
    }
    if (exc.getFilter().size() > 0)
        throw fail("not done yet - multiple filters");
}

Example 54 with ConceptSetComponent

use of org.hl7.fhir.r4.model.ValueSet.ConceptSetComponent in project org.hl7.fhir.core by hapifhir.

the class ValueSetUtilities method markStatus.

public static void markStatus(ValueSet vs, String wg, StandardsStatus status, String pckage, String fmm, IWorkerContext context, String normativeVersion) throws FHIRException {
    if (vs.hasUserData("external.url"))
        return;
    if (wg != null) {
        if (!ToolingExtensions.hasExtension(vs, ToolingExtensions.EXT_WORKGROUP) || (!Utilities.existsInList(ToolingExtensions.readStringExtension(vs, ToolingExtensions.EXT_WORKGROUP), "fhir", "vocab") && Utilities.existsInList(wg, "fhir", "vocab"))) {
            ToolingExtensions.setCodeExtension(vs, ToolingExtensions.EXT_WORKGROUP, wg);
        }
    }
    if (status != null) {
        StandardsStatus ss = ToolingExtensions.getStandardsStatus(vs);
        if (ss == null || ss.isLowerThan(status))
            ToolingExtensions.setStandardsStatus(vs, status, normativeVersion);
        if (pckage != null) {
            if (!vs.hasUserData("ballot.package"))
                vs.setUserData("ballot.package", pckage);
            else if (!pckage.equals(vs.getUserString("ballot.package")))
                if (!"infrastructure".equals(vs.getUserString("ballot.package")))
                    System.out.println("Value Set " + vs.getUrl() + ": ownership clash " + pckage + " vs " + vs.getUserString("ballot.package"));
        }
        if (status == StandardsStatus.NORMATIVE) {
            vs.setExperimental(false);
            vs.setStatus(PublicationStatus.ACTIVE);
        }
    }
    if (fmm != null) {
        String sfmm = ToolingExtensions.readStringExtension(vs, ToolingExtensions.EXT_FMM_LEVEL);
        if (Utilities.noString(sfmm) || Integer.parseInt(sfmm) < Integer.parseInt(fmm)) {
            ToolingExtensions.setIntegerExtension(vs, ToolingExtensions.EXT_FMM_LEVEL, Integer.parseInt(fmm));
        }
        if (Integer.parseInt(fmm) <= 1) {
            vs.setExperimental(true);
        }
    }
    if (vs.hasUserData("cs"))
        CodeSystemUtilities.markStatus((CodeSystem) vs.getUserData("cs"), wg, status, pckage, fmm, normativeVersion);
    else if (status == StandardsStatus.NORMATIVE && context != null) {
        for (ConceptSetComponent csc : vs.getCompose().getInclude()) {
            if (csc.hasSystem()) {
                CodeSystem cs = context.fetchCodeSystem(csc.getSystem());
                if (cs != null) {
                    CodeSystemUtilities.markStatus(cs, wg, status, pckage, fmm, normativeVersion);
                }
            }
        }
    }
}

Example 55 with ConceptSetComponent

use of org.hl7.fhir.r4.model.ValueSet.ConceptSetComponent in project org.hl7.fhir.core by hapifhir.

the class ValueSetRenderer method scanDesignations.

private void scanDesignations(ConceptSetComponent inc, List<String> langs, Map<String, String> designations) {
    for (ConceptReferenceComponent cc : inc.getConcept()) {
        for (Extension ext : cc.getExtension()) {
            if (ToolingExtensions.EXT_TRANSLATION.equals(ext.getUrl())) {
                String lang = ToolingExtensions.readStringExtension(ext, "lang");
                if (!Utilities.noString(lang) && !langs.contains(lang)) {
                    langs.add(lang);
                }
            }
        }
        for (ConceptReferenceDesignationComponent d : cc.getDesignation()) {
            String lang = d.getLanguage();
            if (!Utilities.noString(lang) && !langs.contains(lang)) {
                langs.add(lang);
            } else {
                // can we present this as a designation that we know?
                String disp = getDisplayForDesignation(d);
                String url = getUrlForDesignation(d);
                if (disp == null) {
                    disp = getDisplayForUrl(url);
                }
                if (disp != null && !designations.containsKey(url)) {
                    designations.put(url, disp);
                }
            }
        }
    }
}