Examples with ConceptSetComponent org.hl7.fhir.r4.model.ValueSet.ConceptSetComponent used on opensource projects

Example 6 with ConceptSetComponent

use of org.hl7.fhir.r4.model.ValueSet.ConceptSetComponent in project org.hl7.fhir.core by hapifhir.

the class ICD11Generator method buildValueSet.

private String buildValueSet(CodeSystem cs, String code, String name, JsonObject o, String dest) throws IOException {
    String id = code + "-" + name;
    String url = "http://id.who.int/icd11/ValueSet/" + id;
    ValueSet vs = new ValueSet();
    vs.setId(id);
    vs.setUrl(url);
    vs.setName("VS" + name + "4" + code);
    vs.setTitle("Value Set for " + name + " on " + code);
    vs.setStatus(PublicationStatus.ACTIVE);
    vs.setExperimental(false);
    vs.setDate(cs.getDate());
    vs.setPublisher("WHO");
    vs.setCopyright("Consult WHO For terms of use");
    vs.setVersion(cs.getVersion());
    vs.setStatus(cs.getStatus());
    ConceptSetComponent inc = vs.getCompose().addInclude();
    inc.setSystem(cs.getUrl());
    for (JsonElement e : o.getAsJsonArray("scaleEntity")) {
        inc.addFilter().setProperty("concept").setOp(FilterOperator.ISA).setValue(tail(e.getAsString()));
    }
    new XmlParser(XmlVersion.V1_1).setOutputStyle(OutputStyle.PRETTY).compose(new FileOutputStream(Utilities.path(dest, "vs-" + id + ".xml")), vs);
    return url;
}

Example 7 with ConceptSetComponent

use of org.hl7.fhir.r4.model.ValueSet.ConceptSetComponent in project org.hl7.fhir.core by hapifhir.

the class ISO21090Importer method generateValueSet.

private void generateValueSet(EnumValueSet evs) throws Exception {
    ValueSet bvs = ctxt.fetchResource(ValueSet.class, evs.getTemplate());
    if (bvs == null)
        throw new Exception("Did not find template value set " + evs.getTemplate());
    ValueSet vs = bvs.copy();
    vs.getCompose().getInclude().clear();
    vs.getIdentifier().clear();
    vs.setName("ISO 20190 " + evs.getName() + " Enumeration");
    vs.setId(evs.getName());
    vs.setUrl("http://hl7.org/fhir/iso21090/ValueSet/" + vs.getId());
    vs.setDate(new Date());
    vs.setExperimental(false);
    ConceptSetComponent inc = vs.getCompose().addInclude().setSystem(evs.getSystem());
    for (String code : evs.getCodes()) {
        inc.addConcept().setCode(code);
    }
    new XmlParser().setOutputStyle(OutputStyle.PRETTY).compose(new FileOutputStream(Utilities.path("[tmp]", "iso21090\\ValueSet-" + evs.getName() + ".xml")), vs);
}

Example 8 with ConceptSetComponent

use of org.hl7.fhir.r4.model.ValueSet.ConceptSetComponent in project org.hl7.fhir.core by hapifhir.

the class NarrativeGenerator method generateComposition.

private boolean generateComposition(XhtmlNode x, ValueSet vs, boolean header) {
    boolean hasExtensions = false;
    if (!vs.hasCodeSystem()) {
        if (header) {
            XhtmlNode h = x.addTag("h2");
            h.addText(vs.getName());
            XhtmlNode p = x.addTag("p");
            smartAddText(p, vs.getDescription());
            if (vs.hasCopyrightElement())
                generateCopyright(x, vs);
        }
        XhtmlNode p = x.addTag("p");
        p.addText("This value set includes codes from the following code systems:");
    } else {
        XhtmlNode p = x.addTag("p");
        p.addText("In addition, this value set includes codes from other code systems:");
    }
    XhtmlNode ul = x.addTag("ul");
    XhtmlNode li;
    for (UriType imp : vs.getCompose().getImport()) {
        li = ul.addTag("li");
        li.addText("Import all the codes that are contained in ");
        AddVsRef(imp.getValue(), li);
    }
    for (ConceptSetComponent inc : vs.getCompose().getInclude()) {
        hasExtensions = genInclude(ul, inc, "Include") || hasExtensions;
    }
    for (ConceptSetComponent exc : vs.getCompose().getExclude()) {
        hasExtensions = genInclude(ul, exc, "Exclude") || hasExtensions;
    }
    return hasExtensions;
}

Example 9 with ConceptSetComponent

use of org.hl7.fhir.r4.model.ValueSet.ConceptSetComponent in project org.hl7.fhir.core by hapifhir.

the class NarrativeGenerator method addCsRef.

private <T extends Resource> void addCsRef(ConceptSetComponent inc, XhtmlNode li, T cs) {
    String ref = null;
    if (cs != null) {
        ref = (String) cs.getUserData("filename");
        if (Utilities.noString(ref))
            ref = (String) cs.getUserData("path");
    }
    if (cs != null && ref != null) {
        if (!Utilities.noString(prefix) && ref.startsWith("http://hl7.org/fhir/"))
            ref = ref.substring(20) + "/index.html";
        else if (!ref.endsWith(".html"))
            ref = ref + ".html";
        XhtmlNode a = li.addTag("a");
        a.setAttribute("href", prefix + ref.replace("\\", "/"));
        a.addText(inc.getSystem().toString());
    } else
        li.addText(inc.getSystem().toString());
}

Example 10 with ConceptSetComponent

use of org.hl7.fhir.r4.model.ValueSet.ConceptSetComponent in project org.hl7.fhir.core by hapifhir.

the class NarrativeGenerator method countMembership.

private Integer countMembership(ValueSet vs) {
    int count = 0;
    if (vs.hasExpansion())
        count = count + conceptCount(vs.getExpansion().getContains());
    else {
        if (vs.hasCodeSystem())
            count = count + countConcepts(vs.getCodeSystem().getConcept());
        if (vs.hasCompose()) {
            if (vs.getCompose().hasExclude()) {
                try {
                    ValueSetExpansionOutcome vse = context.expandVS(vs, true);
                    count = 0;
                    count += conceptCount(vse.getValueset().getExpansion().getContains());
                    return count;
                } catch (Exception e) {
                    return null;
                }
            }
            for (ConceptSetComponent inc : vs.getCompose().getInclude()) {
                if (inc.hasFilter())
                    return null;
                if (!inc.hasConcept())
                    return null;
                count = count + inc.getConcept().size();
            }
        }
    }
    return count;
}