Examples with ENCOUNTER org.hl7.fhir.r4.model.codesystems.ResourceTypes.ENCOUNTER used on opensource projects

Example 36 with ENCOUNTER

use of org.hl7.fhir.r4.model.codesystems.ResourceTypes.ENCOUNTER in project cqf-ruler by DBCG.

the class CollectDataProviderIT method testCollectData.

@Test
public void testCollectData() {
    // Create test Measure
    String cql = CqlBuilder.newCqlLibrary("4.0.1").addExpression("Initial Population", "exists([Observation])").build();
    Library lib = Libraries.library(cql);
    Measure m = MeasureBuilder.newCohortMeasure(lib).build();
    this.update(lib);
    this.update(m);
    // Create test data
    Patient john = Patients.john_doe();
    this.create(john);
    Observation obs = newResource(Observation.class).setSubject(new Reference(john));
    this.create(obs);
    Encounter enc = newResource(Encounter.class).setSubject(new Reference(john));
    this.create(enc);
    // Submit it
    Parameters results = collectDataProvider.collectData(new SystemRequestDetails(), m.getIdElement(), "2019-01-01", "2019-12-31", Ids.simple(john), null, null);
    List<ParametersParameterComponent> resources = org.opencds.cqf.ruler.utility.r4.Parameters.getPartsByName(results, "resource");
    assertEquals(1, resources.size());
    assertEquals("Observation", resources.get(0).getResource().fhirType());
    List<ParametersParameterComponent> reports = org.opencds.cqf.ruler.utility.r4.Parameters.getPartsByName(results, "measureReport");
    assertEquals(1, reports.size());
    assertEquals("MeasureReport", reports.get(0).getResource().fhirType());
}

Example 37 with ENCOUNTER

use of org.hl7.fhir.r4.model.codesystems.ResourceTypes.ENCOUNTER in project cqf-ruler by DBCG.

the class Session method applyPlanDefinition.

@Operation(name = "$apply", idempotent = true, type = PlanDefinition.class)
public CarePlan applyPlanDefinition(RequestDetails theRequest, @IdParam IdType theId, @OperationParam(name = "patient") String patientId, @OperationParam(name = "encounter") String encounterId, @OperationParam(name = "practitioner") String practitionerId, @OperationParam(name = "organization") String organizationId, @OperationParam(name = "userType") String userType, @OperationParam(name = "userLanguage") String userLanguage, @OperationParam(name = "userTaskContext") String userTaskContext, @OperationParam(name = "setting") String setting, @OperationParam(name = "settingContext") String settingContext) throws IOException, FHIRException {
    PlanDefinition planDefinition = this.planDefinitionDao.read(theId);
    if (planDefinition == null) {
        throw new IllegalArgumentException("Couldn't find PlanDefinition " + theId);
    }
    logger.info("Performing $apply operation on PlanDefinition/{}", theId);
    CarePlanBuilder builder = new CarePlanBuilder();
    builder.buildInstantiatesCanonical(planDefinition.getUrl()).buildSubject(new Reference(patientId)).buildStatus(CarePlan.CarePlanStatus.DRAFT);
    if (encounterId != null)
        builder.buildEncounter(new Reference(encounterId));
    if (practitionerId != null)
        builder.buildAuthor(new Reference(practitionerId));
    if (organizationId != null)
        builder.buildAuthor(new Reference(organizationId));
    if (userLanguage != null)
        builder.buildLanguage(userLanguage);
    // Each Group of actions shares a RequestGroup
    RequestGroupBuilder requestGroupBuilder = new RequestGroupBuilder().buildStatus().buildIntent();
    Session session = new Session(planDefinition, builder, patientId, encounterId, practitionerId, organizationId, userType, userLanguage, userTaskContext, setting, settingContext, requestGroupBuilder);
    return (CarePlan) ContainedHelper.liftContainedResourcesToParent(resolveActions(session, theRequest));
}

Example 38 with ENCOUNTER

use of org.hl7.fhir.r4.model.codesystems.ResourceTypes.ENCOUNTER in project cqf-ruler by DBCG.

the class Session method applyPlanDefinition.

@Operation(name = "$apply", idempotent = true, type = PlanDefinition.class)
public CarePlan applyPlanDefinition(RequestDetails theRequest, @IdParam IdType theId, @OperationParam(name = "patient") String patientId, @OperationParam(name = "encounter") String encounterId, @OperationParam(name = "practitioner") String practitionerId, @OperationParam(name = "organization") String organizationId, @OperationParam(name = "userType") String userType, @OperationParam(name = "userLanguage") String userLanguage, @OperationParam(name = "userTaskContext") String userTaskContext, @OperationParam(name = "setting") String setting, @OperationParam(name = "settingContext") String settingContext) throws IOException, FHIRException {
    PlanDefinition planDefinition = this.planDefinitionDao.read(theId);
    if (planDefinition == null) {
        throw new IllegalArgumentException("Couldn't find PlanDefinition " + theId);
    }
    logger.info("Performing $apply operation on PlanDefinition/{}", theId);
    CarePlanBuilder builder = new CarePlanBuilder();
    builder.buildDefinition(new Reference(planDefinition.getIdElement().getIdPart())).buildSubject(new Reference(patientId)).buildStatus(CarePlan.CarePlanStatus.DRAFT);
    if (encounterId != null)
        builder.buildContext(new Reference(encounterId));
    if (practitionerId != null)
        builder.buildAuthor(new Reference(practitionerId));
    if (organizationId != null)
        builder.buildAuthor(new Reference(organizationId));
    if (userLanguage != null)
        builder.buildLanguage(userLanguage);
    // Each Group of actions shares a RequestGroup
    RequestGroupBuilder requestGroupBuilder = new RequestGroupBuilder().buildStatus().buildIntent();
    Session session = new Session(planDefinition, builder, patientId, encounterId, practitionerId, organizationId, userType, userLanguage, userTaskContext, setting, settingContext, requestGroupBuilder);
    return (CarePlan) ContainedHelper.liftContainedResourcesToParent(resolveActions(theRequest, session));
}

Example 39 with ENCOUNTER

use of org.hl7.fhir.r4.model.codesystems.ResourceTypes.ENCOUNTER in project quality-measure-and-cohort-service by Alvearie.

the class CohortCLITest method testMainNonPatientContext.

@Test
public void testMainNonPatientContext() throws Exception {
    Encounter encounter = new Encounter();
    encounter.setId("123");
    encounter.setStatus(Encounter.EncounterStatus.FINISHED);
    Encounter otherEncounter = new Encounter();
    otherEncounter.setId("234");
    otherEncounter.setStatus(Encounter.EncounterStatus.FINISHED);
    FhirServerConfig fhirConfig = getFhirServerConfig();
    String resourcePath = "/Encounter?_count=1000&_format=json";
    mockFhirResourceRetrieval(resourcePath, getFhirParser(), makeBundle(encounter, otherEncounter));
    setupTestFor(encounter, fhirConfig, "cql.encounter-context");
    File tmpFile = new File("target/fhir-stub.json");
    ObjectMapper om = new ObjectMapper();
    try (Writer w = new FileWriter(tmpFile)) {
        w.write(om.writeValueAsString(fhirConfig));
    }
    try {
        PrintStream originalOut = System.out;
        ByteArrayOutputStream baos = new ByteArrayOutputStream();
        try (PrintStream captureOut = new PrintStream(baos)) {
            System.setOut(captureOut);
            CohortCLI.main(new String[] { "-d", tmpFile.getAbsolutePath(), "-t", tmpFile.getAbsolutePath(), "-f", "src/test/resources/cql/encounter-context", "-l", "EncounterContext", "-v", "1.0.0", "-e", "ValidEncounterCount", "-n", "Encounter" });
        } finally {
            System.setOut(originalOut);
        }
        String output = baos.toString();
        assertTrue(output.contains("Expression: \"ValidEncounterCount\", Result: 2"));
        verify(1, getRequestedFor(urlEqualTo(resourcePath)));
    } finally {
        tmpFile.delete();
    }
}

Example 40 with ENCOUNTER

use of org.hl7.fhir.r4.model.codesystems.ResourceTypes.ENCOUNTER in project quality-measure-and-cohort-service by Alvearie.

the class CqlTemporalTests method canFindMultipleEncountersFollowingEachOther.

@Test
public void canFindMultipleEncountersFollowingEachOther() throws Exception {
    Patient patient = getPatient("123", Enumerations.AdministrativeGender.FEMALE, null);
    FhirServerConfig fhirConfig = getFhirServerConfig();
    Bundle bundle = new Bundle();
    Bundle.BundleEntryComponent firstEncounter = new Bundle.BundleEntryComponent();
    firstEncounter.setResource(ENCOUNTER_1);
    Bundle.BundleEntryComponent secondEncounter = new Bundle.BundleEntryComponent();
    secondEncounter.setResource(ENCOUNTER_2);
    bundle.addEntry(firstEncounter);
    bundle.addEntry(secondEncounter);
    mockFhirResourceRetrieval("/Encounter?subject=Patient%2F123&_format=json", getFhirParser(), bundle, fhirConfig);
    CqlEvaluator evaluator = setupTestFor(patient, "cql.temporal", ClasspathCqlLibraryProvider.FHIR_HELPERS_CLASSPATH);
    String expression = "ValidEncounters2";
    CqlEvaluationResult actual = evaluator.evaluate(new CqlVersionedIdentifier("Test3", "1.0.0"), null, newPatientContext("123"), Collections.singleton(expression));
    Map<String, Object> expected = new HashMap<>();
    expected.put(expression, true);
    Assert.assertEquals(expected, actual.getExpressionResults());
}