Examples with ENCOUNTER org.hl7.fhir.r4.model.codesystems.ResourceTypes.ENCOUNTER used on opensource projects

Example 46 with ENCOUNTER

use of org.hl7.fhir.r4.model.codesystems.ResourceTypes.ENCOUNTER in project summary-care-record-api by NHSDigital.

the class FindingMapper method mapPerformer.

private void mapPerformer(List<Resource> resources, Encounter encounter, Node performer) {
    DateTimeType time = parseDate(xmlUtils.getValueByXPath(performer, FINDING_PARTICIPANT_TIME_XPATH), DateTimeType.class);
    participantMapper.map(performer).stream().peek(it -> resources.add(it)).filter(it -> it instanceof PractitionerRole).map(Reference::new).forEach(it -> {
        EncounterParticipantComponent participant = new EncounterParticipantComponent();
        String modeCode = xmlUtils.getValueByXPath(performer, FINDING_PERFORMER_MODE_CODE_XPATH);
        participant.addExtension(PERFORMER_EXTENSION_URL, new CodeableConcept(new Coding().setSystem(ENCOUNTER_PARTICIPATION_MODE_SYSTEM).setCode(modeCode).setDisplay(getParticipationModeDisplay(modeCode))));
        encounter.addParticipant(participant.setPeriod(new Period().setStartElement(time)).addType(getParticipationType("PRF", "performer")).setIndividual(it));
    });
}

Example 47 with ENCOUNTER

use of org.hl7.fhir.r4.model.codesystems.ResourceTypes.ENCOUNTER in project summary-care-record-api by NHSDigital.

the class FindingMapper method mapAuthor.

private void mapAuthor(List<Resource> resources, Encounter encounter, Node author) {
    DateTimeType time = parseDate(xmlUtils.getValueByXPath(author, FINDING_PARTICIPANT_TIME_XPATH), DateTimeType.class);
    participantMapper.map(author).stream().peek(it -> resources.add(it)).filter(it -> it instanceof PractitionerRole).map(Reference::new).forEach(it -> encounter.addParticipant(new EncounterParticipantComponent().setPeriod(new Period().setStartElement(time)).addType(getParticipationType("AUT", "author")).setIndividual(it)));
}

Example 48 with ENCOUNTER

use of org.hl7.fhir.r4.model.codesystems.ResourceTypes.ENCOUNTER in project summary-care-record-api by NHSDigital.

the class ObservationMapper method mapFinding.

private static Finding mapFinding(Observation observation, Bundle bundle) {
    var finding = new Finding();
    finding.setIdRoot(observation.getIdentifierFirstRep().getValue());
    finding.setCodeCode(observation.getCode().getCodingFirstRep().getCode());
    finding.setCodeDisplayName(observation.getCode().getCodingFirstRep().getDisplay());
    finding.setStatusCodeCode(mapStatus(observation.getStatus()));
    if (observation.getEffective() instanceof DateTimeType) {
        finding.setEffectiveTimeCenter(formatDateToHl7(observation.getEffectiveDateTimeType()));
    } else if (observation.getEffective() instanceof Period) {
        var period = observation.getEffectivePeriod();
        if (period.hasStart()) {
            finding.setEffectiveTimeLow(formatDateToHl7(period.getStartElement()));
        }
        if (period.hasEnd()) {
            finding.setEffectiveTimeHigh(formatDateToHl7(period.getEndElement()));
        }
    } else {
        throw new FhirValidationException("Observation.effective must be of type DateTimeType or Period");
    }
    var encounterReference = observation.getEncounter().getReference();
    if (StringUtils.isNotBlank(encounterReference)) {
        var encounter = getResourceByReference(bundle, encounterReference, Encounter.class).orElseThrow(() -> new FhirValidationException(String.format("Bundle is Missing Encounter %s that is linked to Condition %s", observation.getEncounter().getReference(), observation.getId())));
        for (var encounterParticipant : encounter.getParticipant()) {
            Coding coding = encounterParticipant.getTypeFirstRep().getCodingFirstRep();
            if (!PARTICIPATION_TYPE_SYSTEM.equals(coding.getSystem())) {
                throw new FhirValidationException("Unsupported encounter participant system: " + coding.getSystem());
            }
            var code = coding.getCode();
            if ("AUT".equals(code)) {
                var author = mapAuthor1(bundle, encounterParticipant);
                finding.setAuthor(author);
            } else if ("INF".equals(code)) {
                var informant = mapInformant(bundle, encounterParticipant);
                finding.setInformant(informant);
            } else if ("PRF".equals(code)) {
                var performer = mapPerformer(bundle, encounterParticipant);
                finding.setPerformer(performer);
            } else {
                throw new FhirValidationException(String.format("Invalid encounter %s participant code %s", encounter.getId(), code));
            }
        }
    }
    return finding;
}

Example 49 with ENCOUNTER

use of org.hl7.fhir.r4.model.codesystems.ResourceTypes.ENCOUNTER in project openmrs-module-fhir2 by openmrs.

the class EncounterSearchQueryTest method searchForEncounters_shouldSearchForEncountersBySubjectGivenName.

@Test
public void searchForEncounters_shouldSearchForEncountersBySubjectGivenName() {
    ReferenceAndListParam subjectReference = new ReferenceAndListParam();
    ReferenceParam subject = new ReferenceParam();
    subject.setValue(PATIENT_GIVEN_NAME);
    subject.setChain(Patient.SP_GIVEN);
    subjectReference.addValue(new ReferenceOrListParam().add(subject));
    SearchParameterMap theParams = new SearchParameterMap().addParameter(FhirConstants.PATIENT_REFERENCE_SEARCH_HANDLER, subjectReference);
    IBundleProvider results = search(theParams);
    List<IBaseResource> resultList = get(results);
    assertThat(results, notNullValue());
    assertThat(resultList, not(empty()));
    assertThat(resultList, hasSize(greaterThanOrEqualTo(1)));
    assertThat(((Encounter) resultList.iterator().next()).getId(), equalTo(ENCOUNTER_UUID));
}

Example 50 with ENCOUNTER

use of org.hl7.fhir.r4.model.codesystems.ResourceTypes.ENCOUNTER in project openmrs-module-fhir2 by openmrs.

the class EncounterSearchQueryTest method searchForEncounters_shouldReverseIncludeMedicationRequestsWithReturnedResults.

@Test
public void searchForEncounters_shouldReverseIncludeMedicationRequestsWithReturnedResults() {
    TokenAndListParam uuid = new TokenAndListParam().addAnd(new TokenParam(ENCOUNTER_UUID));
    HashSet<Include> revIncludes = new HashSet<>();
    revIncludes.add(new Include("MedicationRequest:encounter"));
    SearchParameterMap theParams = new SearchParameterMap().addParameter(FhirConstants.COMMON_SEARCH_HANDLER, FhirConstants.ID_PROPERTY, uuid).addParameter(FhirConstants.REVERSE_INCLUDE_SEARCH_HANDLER, revIncludes);
    IBundleProvider results = search(theParams);
    assertThat(results, notNullValue());
    assertThat(results.size(), equalTo(1));
    List<IBaseResource> resultList = get(results);
    assertThat(results, notNullValue());
    // reverse included resources added as part of the result list
    assertThat(resultList.size(), equalTo(9));
    assertThat(resultList.subList(1, 9), everyItem(allOf(is(instanceOf(MedicationRequest.class)), hasProperty("encounter", hasProperty("referenceElement", hasProperty("idPart", equalTo(ENCOUNTER_UUID)))))));
}