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Example 11 with ValueSetCheckerSimple

use of org.hl7.fhir.r4.terminologies.ValueSetCheckerSimple in project org.hl7.fhir.core by hapifhir.

the class SimpleWorkerContextTests method testValidateCodableConceptWithValueSetChecker.

@Test
public void testValidateCodableConceptWithValueSetChecker() throws IOException {
    Mockito.doReturn(valueSetCheckerSimple).when(context).constructValueSetCheckerSimple(any(), any());
    Mockito.doReturn(expectedValidationResult).when(valueSetCheckerSimple).validateCode(any(CodeableConcept.class));
    CodeableConcept codeableConcept = new CodeableConcept();
    ValueSet valueSet = new ValueSet();
    Mockito.doReturn(cacheToken).when(terminologyCache).generateValidationToken(CacheTestUtils.validationOptions, codeableConcept, valueSet);
    IWorkerContext.ValidationResult validationResultB = context.validateCode(CacheTestUtils.validationOptions, codeableConcept, valueSet);
    assertEquals(expectedValidationResult, validationResultB);
    Mockito.verify(valueSetCheckerSimple).validateCode(codeableConcept);
    Mockito.verify(terminologyCache).cacheValidation(cacheToken, expectedValidationResult, false);
    Mockito.verify(context, times(0)).validateOnServer(any(), any(), any());
}
Also used : ValueSet(org.hl7.fhir.r5.model.ValueSet) CodeableConcept(org.hl7.fhir.r5.model.CodeableConcept) Test(org.junit.jupiter.api.Test)

Example 12 with ValueSetCheckerSimple

use of org.hl7.fhir.r4.terminologies.ValueSetCheckerSimple in project org.hl7.fhir.core by hapifhir.

the class BaseWorkerContext method validateCode.

@Override
public ValidationResult validateCode(ValidationOptions options, CodeableConcept code, ValueSet vs) {
    CacheToken cacheToken = txCache.generateValidationToken(options, code, vs);
    ValidationResult res = txCache.getValidation(cacheToken);
    if (res != null)
        return res;
    // ok, first we try to validate locally
    try {
        ValueSetCheckerSimple vsc = new ValueSetCheckerSimple(options, vs, this);
        res = vsc.validateCode(code);
        txCache.cacheValidation(cacheToken, res, TerminologyCache.TRANSIENT);
        return res;
    } catch (Exception e) {
    }
    // if that failed, we try to validate on the server
    if (noTerminologyServer)
        return new ValidationResult(IssueSeverity.ERROR, "Error validating code: running without terminology services", TerminologyServiceErrorClass.NOSERVICE);
    tlog("$validate " + txCache.summary(code) + " for " + txCache.summary(vs));
    try {
        Parameters pIn = new Parameters();
        pIn.addParameter().setName("codeableConcept").setValue(code);
        if (options != null)
            setTerminologyOptions(options, pIn);
        res = validateOnServer(vs, pIn);
    } catch (Exception e) {
        res = new ValidationResult(IssueSeverity.ERROR, e.getMessage() == null ? e.getClass().getName() : e.getMessage()).setTxLink(txLog.getLastId());
    }
    txCache.cacheValidation(cacheToken, res, TerminologyCache.PERMANENT);
    return res;
}
Also used : CacheToken(org.hl7.fhir.r4.context.TerminologyCache.CacheToken) ValueSetCheckerSimple(org.hl7.fhir.r4.terminologies.ValueSetCheckerSimple) DefinitionException(org.hl7.fhir.exceptions.DefinitionException) IOException(java.io.IOException) TerminologyServiceException(org.hl7.fhir.exceptions.TerminologyServiceException) FileNotFoundException(java.io.FileNotFoundException) FHIRException(org.hl7.fhir.exceptions.FHIRException)

Example 13 with ValueSetCheckerSimple

use of org.hl7.fhir.r4.terminologies.ValueSetCheckerSimple in project org.hl7.fhir.core by hapifhir.

the class SimpleWorkerContextTests method testValidateCodingWithValueSetChecker.

@Test
public void testValidateCodingWithValueSetChecker() throws IOException {
    ValidationOptions validationOptions = new ValidationOptions().guessSystem().setVersionFlexible(false);
    ValueSet valueSet = new ValueSet();
    Coding coding = new Coding();
    Mockito.doReturn(cacheToken).when(terminologyCache).generateValidationToken(validationOptions, coding, valueSet);
    Mockito.doReturn(valueSetCheckerSimple).when(context).constructValueSetCheckerSimple(any(), any(), any());
    Mockito.doReturn(expectedValidationResult).when(valueSetCheckerSimple).validateCode(any(Coding.class));
    ValidationContextCarrier ctxt = mock(ValidationContextCarrier.class);
    IWorkerContext.ValidationResult actualValidationResult = context.validateCode(validationOptions, coding, valueSet, ctxt);
    assertEquals(expectedValidationResult, actualValidationResult);
    Mockito.verify(valueSetCheckerSimple).validateCode(coding);
    Mockito.verify(terminologyCache).getValidation(cacheToken);
    Mockito.verify(terminologyCache).cacheValidation(cacheToken, expectedValidationResult, false);
}
Also used : Coding(org.hl7.fhir.r5.model.Coding) ValidationContextCarrier(org.hl7.fhir.r5.utils.validation.ValidationContextCarrier) ValidationOptions(org.hl7.fhir.utilities.validation.ValidationOptions) ValueSet(org.hl7.fhir.r5.model.ValueSet) Test(org.junit.jupiter.api.Test)

Example 14 with ValueSetCheckerSimple

use of org.hl7.fhir.r4.terminologies.ValueSetCheckerSimple in project org.hl7.fhir.core by hapifhir.

the class SimpleWorkerContextTests method testValidateCodableConceptWithCache.

@Test
public void testValidateCodableConceptWithCache() throws IOException {
    CodeableConcept codeableConcept = new CodeableConcept();
    ValueSet valueSet = new ValueSet();
    Mockito.doReturn(cacheToken).when(terminologyCache).generateValidationToken(CacheTestUtils.validationOptions, codeableConcept, valueSet);
    Mockito.doReturn(expectedValidationResult).when(terminologyCache).getValidation(cacheToken);
    IWorkerContext.ValidationResult actualValidationResult = context.validateCode(CacheTestUtils.validationOptions, codeableConcept, valueSet);
    assertEquals(expectedValidationResult, actualValidationResult);
    Mockito.verify(valueSetCheckerSimple, times(0)).validateCode(codeableConcept);
    Mockito.verify(terminologyCache).getValidation(cacheToken);
    Mockito.verify(terminologyCache, times(0)).cacheValidation(any(), any(), anyBoolean());
}
Also used : ValueSet(org.hl7.fhir.r5.model.ValueSet) CodeableConcept(org.hl7.fhir.r5.model.CodeableConcept) Test(org.junit.jupiter.api.Test)

Example 15 with ValueSetCheckerSimple

use of org.hl7.fhir.r4.terminologies.ValueSetCheckerSimple in project org.hl7.fhir.core by hapifhir.

the class BaseWorkerContext method validateCode.

@Override
public ValidationResult validateCode(ValidationOptions options, Coding code, ValueSet vs, ValidationContextCarrier ctxt) {
    if (options == null) {
        options = ValidationOptions.defaults();
    }
    if (code.hasSystem()) {
        codeSystemsUsed.add(code.getSystem());
    }
    CacheToken cacheToken = txCache != null ? txCache.generateValidationToken(options, code, vs) : null;
    ValidationResult res = null;
    if (txCache != null) {
        res = txCache.getValidation(cacheToken);
    }
    if (res != null) {
        return res;
    }
    if (options.isUseClient()) {
        // ok, first we try to validate locally
        try {
            ValueSetCheckerSimple vsc = new ValueSetCheckerSimple(options, vs, this, ctxt);
            if (!vsc.isServerSide(code.getSystem())) {
                res = vsc.validateCode(code);
                if (txCache != null) {
                    txCache.cacheValidation(cacheToken, res, TerminologyCache.TRANSIENT);
                }
                return res;
            }
        } catch (Exception e) {
        }
    }
    String codeKey = code.hasVersion() ? code.getSystem() + "|" + code.getVersion() : code.getSystem();
    if (!options.isUseServer()) {
        return new ValidationResult(IssueSeverity.WARNING, formatMessage(I18nConstants.UNABLE_TO_VALIDATE_CODE_WITHOUT_USING_SERVER), TerminologyServiceErrorClass.BLOCKED_BY_OPTIONS);
    }
    if (unsupportedCodeSystems.contains(codeKey)) {
        return new ValidationResult(IssueSeverity.ERROR, formatMessage(I18nConstants.TERMINOLOGY_TX_SYSTEM_NOTKNOWN, code.getSystem()), TerminologyServiceErrorClass.CODESYSTEM_UNSUPPORTED);
    }
    // if that failed, we try to validate on the server
    if (noTerminologyServer) {
        return new ValidationResult(IssueSeverity.ERROR, formatMessage(I18nConstants.ERROR_VALIDATING_CODE_RUNNING_WITHOUT_TERMINOLOGY_SERVICES), TerminologyServiceErrorClass.NOSERVICE);
    }
    String csumm = txCache != null ? txCache.summary(code) : null;
    if (txCache != null) {
        tlog("$validate " + csumm + " for " + txCache.summary(vs));
    } else {
        tlog("$validate " + csumm + " before cache exists");
    }
    try {
        Parameters pIn = new Parameters();
        pIn.addParameter().setName("coding").setValue(code);
        if (options.isGuessSystem()) {
            pIn.addParameter().setName("implySystem").setValue(new BooleanType(true));
        }
        setTerminologyOptions(options, pIn);
        res = validateOnServer(vs, pIn, options);
    } catch (Exception e) {
        res = new ValidationResult(IssueSeverity.ERROR, e.getMessage() == null ? e.getClass().getName() : e.getMessage()).setTxLink(txLog == null ? null : txLog.getLastId()).setErrorClass(TerminologyServiceErrorClass.SERVER_ERROR);
    }
    if (res.getErrorClass() == TerminologyServiceErrorClass.CODESYSTEM_UNSUPPORTED && !code.hasVersion()) {
        unsupportedCodeSystems.add(codeKey);
    } else if (txCache != null) {
        // we never cache unsuppoted code systems - we always keep trying (but only once per run)
        txCache.cacheValidation(cacheToken, res, TerminologyCache.PERMANENT);
    }
    return res;
}
Also used : Parameters(org.hl7.fhir.r4b.model.Parameters) CacheToken(org.hl7.fhir.r4b.context.TerminologyCache.CacheToken) BooleanType(org.hl7.fhir.r4b.model.BooleanType) ValueSetCheckerSimple(org.hl7.fhir.r4b.terminologies.ValueSetCheckerSimple) TerminologyServiceException(org.hl7.fhir.exceptions.TerminologyServiceException) FileNotFoundException(java.io.FileNotFoundException) NoTerminologyServiceException(org.hl7.fhir.exceptions.NoTerminologyServiceException) DefinitionException(org.hl7.fhir.exceptions.DefinitionException) IOException(java.io.IOException) FHIRException(org.hl7.fhir.exceptions.FHIRException)

Aggregations

FileNotFoundException (java.io.FileNotFoundException)10 IOException (java.io.IOException)10 TerminologyServiceException (org.hl7.fhir.exceptions.TerminologyServiceException)10 DefinitionException (org.hl7.fhir.exceptions.DefinitionException)8 FHIRException (org.hl7.fhir.exceptions.FHIRException)8 ValueSet (org.hl7.fhir.r5.model.ValueSet)7 NoTerminologyServiceException (org.hl7.fhir.exceptions.NoTerminologyServiceException)6 Test (org.junit.jupiter.api.Test)6 ValidationOptions (org.hl7.fhir.utilities.validation.ValidationOptions)5 Coding (org.hl7.fhir.r5.model.Coding)4 Parameters (org.hl7.fhir.r4b.model.Parameters)3 ValueSetCheckerSimple (org.hl7.fhir.r4b.terminologies.ValueSetCheckerSimple)3 CodeableConcept (org.hl7.fhir.r5.model.CodeableConcept)3 Parameters (org.hl7.fhir.r5.model.Parameters)3 ValueSetCheckerSimple (org.hl7.fhir.r5.terminologies.ValueSetCheckerSimple)3 ValidationContextCarrier (org.hl7.fhir.r5.utils.validation.ValidationContextCarrier)3 HashSet (java.util.HashSet)2 NotImplementedException (org.apache.commons.lang3.NotImplementedException)2 CacheToken (org.hl7.fhir.r4.context.TerminologyCache.CacheToken)2 ValueSetCheckerSimple (org.hl7.fhir.r4.terminologies.ValueSetCheckerSimple)2