use of org.hl7.fhir.utilities.validation.ValidationOptions in project org.hl7.fhir.core by hapifhir.
the class TerminologyCache method generateValidationToken.
public CacheToken generateValidationToken(ValidationOptions options, CodeableConcept code, ValueSet vs) {
CacheToken ct = new CacheToken();
for (Coding c : code.getCoding()) {
if (c.hasSystem())
ct.setName(getNameForSystem(c.getSystem()));
}
JsonParser json = new JsonParser();
json.setOutputStyle(OutputStyle.PRETTY);
ValueSet vsc = getVSEssense(vs);
try {
ct.request = "{\"code\" : " + json.composeString(code, "codeableConcept") + ", \"valueSet\" :" + extracted(json, vsc) + (options == null ? "" : ", " + options.toJson()) + "}";
} catch (IOException e) {
throw new Error(e);
}
ct.key = String.valueOf(hashNWS(ct.request));
return ct;
}
use of org.hl7.fhir.utilities.validation.ValidationOptions in project org.hl7.fhir.core by hapifhir.
the class TerminologyCache method generateValidationToken.
public CacheToken generateValidationToken(ValidationOptions options, Coding code, ValueSet vs) {
CacheToken ct = new CacheToken();
if (code.hasSystem())
ct.name = getNameForSystem(code.getSystem());
else
ct.name = NAME_FOR_NO_SYSTEM;
JsonParser json = new JsonParser();
json.setOutputStyle(OutputStyle.PRETTY);
ValueSet vsc = getVSEssense(vs);
try {
ct.request = "{\"code\" : " + json.composeString(code, "code") + ", \"valueSet\" :" + (vsc == null ? "null" : extracted(json, vsc)) + (options == null ? "" : ", " + options.toJson()) + "}";
} catch (IOException e) {
throw new Error(e);
}
ct.key = String.valueOf(hashNWS(ct.request));
return ct;
}
use of org.hl7.fhir.utilities.validation.ValidationOptions in project org.hl7.fhir.core by hapifhir.
the class BaseWorkerContext method validateCodeBatch.
@Override
public void validateCodeBatch(ValidationOptions options, List<? extends CodingValidationRequest> codes, ValueSet vs) {
if (options == null) {
options = ValidationOptions.defaults();
}
// 3rd pass: hit the server
for (CodingValidationRequest t : codes) {
t.setCacheToken(txCache != null ? txCache.generateValidationToken(options, t.getCoding(), vs) : null);
if (t.getCoding().hasSystem()) {
codeSystemsUsed.add(t.getCoding().getSystem());
}
if (txCache != null) {
t.setResult(txCache.getValidation(t.getCacheToken()));
}
}
if (options.isUseClient()) {
for (CodingValidationRequest t : codes) {
if (!t.hasResult()) {
try {
ValueSetCheckerSimple vsc = new ValueSetCheckerSimple(options, vs, this);
ValidationResult res = vsc.validateCode(t.getCoding());
if (txCache != null) {
txCache.cacheValidation(t.getCacheToken(), res, TerminologyCache.TRANSIENT);
}
t.setResult(res);
} catch (Exception e) {
}
}
}
}
for (CodingValidationRequest t : codes) {
if (!t.hasResult()) {
String codeKey = t.getCoding().hasVersion() ? t.getCoding().getSystem() + "|" + t.getCoding().getVersion() : t.getCoding().getSystem();
if (!options.isUseServer()) {
t.setResult(new ValidationResult(IssueSeverity.WARNING, formatMessage(I18nConstants.UNABLE_TO_VALIDATE_CODE_WITHOUT_USING_SERVER), TerminologyServiceErrorClass.BLOCKED_BY_OPTIONS));
} else if (unsupportedCodeSystems.contains(codeKey)) {
t.setResult(new ValidationResult(IssueSeverity.ERROR, formatMessage(I18nConstants.TERMINOLOGY_TX_SYSTEM_NOTKNOWN, t.getCoding().getSystem()), TerminologyServiceErrorClass.CODESYSTEM_UNSUPPORTED));
} else if (noTerminologyServer) {
t.setResult(new ValidationResult(IssueSeverity.ERROR, formatMessage(I18nConstants.ERROR_VALIDATING_CODE_RUNNING_WITHOUT_TERMINOLOGY_SERVICES), TerminologyServiceErrorClass.NOSERVICE));
}
}
}
if (expParameters == null)
throw new Error(formatMessage(I18nConstants.NO_EXPANSIONPROFILE_PROVIDED));
// for those that that failed, we try to validate on the server
Bundle batch = new Bundle();
batch.setType(BundleType.BATCH);
Set<String> systems = new HashSet<>();
for (CodingValidationRequest t : codes) {
if (!t.hasResult()) {
Parameters pIn = new Parameters();
pIn.addParameter().setName("coding").setValue(t.getCoding());
if (options.isGuessSystem()) {
pIn.addParameter().setName("implySystem").setValue(new BooleanType(true));
}
if (vs != null) {
pIn.addParameter().setName("valueSet").setResource(vs);
}
pIn.addParameter().setName("profile").setResource(expParameters);
setTerminologyOptions(options, pIn);
BundleEntryComponent be = batch.addEntry();
be.setResource(pIn);
be.getRequest().setMethod(HTTPVerb.POST);
be.getRequest().setUrl("CodeSystem/$validate-code");
be.setUserData("source", t);
systems.add(t.getCoding().getSystem());
}
}
if (batch.getEntry().size() > 0) {
tlog("$batch validate for " + batch.getEntry().size() + " codes on systems " + systems.toString());
if (txClient == null) {
throw new FHIRException(formatMessage(I18nConstants.ATTEMPT_TO_USE_TERMINOLOGY_SERVER_WHEN_NO_TERMINOLOGY_SERVER_IS_AVAILABLE));
}
if (txLog != null) {
txLog.clearLastId();
}
Bundle resp = txClient.validateBatch(batch);
for (int i = 0; i < batch.getEntry().size(); i++) {
CodingValidationRequest t = (CodingValidationRequest) batch.getEntry().get(i).getUserData("source");
BundleEntryComponent r = resp.getEntry().get(i);
if (r.getResource() instanceof Parameters) {
t.setResult(processValidationResult((Parameters) r.getResource()));
if (txCache != null) {
txCache.cacheValidation(t.getCacheToken(), t.getResult(), TerminologyCache.PERMANENT);
}
} else {
t.setResult(new ValidationResult(IssueSeverity.ERROR, getResponseText(r.getResource())).setTxLink(txLog == null ? null : txLog.getLastId()));
}
}
}
}
use of org.hl7.fhir.utilities.validation.ValidationOptions in project org.hl7.fhir.core by hapifhir.
the class BaseWorkerContext method validateOnServer.
private ValidationResult validateOnServer(ValueSet vs, Parameters pin, ValidationOptions options) throws FHIRException {
boolean cache = false;
if (vs != null) {
for (ConceptSetComponent inc : vs.getCompose().getInclude()) {
codeSystemsUsed.add(inc.getSystem());
}
for (ConceptSetComponent inc : vs.getCompose().getExclude()) {
codeSystemsUsed.add(inc.getSystem());
}
}
if (vs != null) {
if (isTxCaching && cacheId != null && vs.getUrl() != null && cached.contains(vs.getUrl() + "|" + vs.getVersion())) {
pin.addParameter().setName("url").setValue(new UriType(vs.getUrl() + (vs.hasVersion() ? "|" + vs.getVersion() : "")));
} else if (options.getVsAsUrl()) {
pin.addParameter().setName("url").setValue(new StringType(vs.getUrl()));
} else {
pin.addParameter().setName("valueSet").setResource(vs);
if (vs.getUrl() != null) {
cached.add(vs.getUrl() + "|" + vs.getVersion());
}
}
cache = true;
addDependentResources(pin, vs);
}
if (cache) {
pin.addParameter().setName("cache-id").setValue(new StringType(cacheId));
}
for (ParametersParameterComponent pp : pin.getParameter()) {
if (pp.getName().equals("profile")) {
throw new Error(formatMessage(I18nConstants.CAN_ONLY_SPECIFY_PROFILE_IN_THE_CONTEXT));
}
}
if (expParameters == null) {
throw new Error(formatMessage(I18nConstants.NO_EXPANSIONPROFILE_PROVIDED));
}
pin.addParameter().setName("profile").setResource(expParameters);
if (txLog != null) {
txLog.clearLastId();
}
if (txClient == null) {
throw new FHIRException(formatMessage(I18nConstants.ATTEMPT_TO_USE_TERMINOLOGY_SERVER_WHEN_NO_TERMINOLOGY_SERVER_IS_AVAILABLE));
}
Parameters pOut;
if (vs == null) {
pOut = txClient.validateCS(pin);
} else {
pOut = txClient.validateVS(pin);
}
return processValidationResult(pOut);
}
use of org.hl7.fhir.utilities.validation.ValidationOptions in project org.hl7.fhir.core by hapifhir.
the class BaseWorkerContext method validateCode.
@Override
public ValidationResult validateCode(ValidationOptions options, CodeableConcept code, ValueSet vs) {
CacheToken cacheToken = txCache.generateValidationToken(options, code, vs);
ValidationResult res = txCache.getValidation(cacheToken);
if (res != null) {
return res;
}
for (Coding c : code.getCoding()) {
if (c.hasSystem()) {
codeSystemsUsed.add(c.getSystem());
}
}
if (options.isUseClient()) {
// ok, first we try to validate locally
try {
ValueSetCheckerSimple vsc = new ValueSetCheckerSimple(options, vs, this);
res = vsc.validateCode(code);
txCache.cacheValidation(cacheToken, res, TerminologyCache.TRANSIENT);
return res;
} catch (Exception e) {
if (e instanceof NoTerminologyServiceException) {
return new ValidationResult(IssueSeverity.ERROR, "No Terminology Service", TerminologyServiceErrorClass.NOSERVICE);
}
}
}
if (!options.isUseServer()) {
return new ValidationResult(IssueSeverity.WARNING, "Unable to validate code without using server", TerminologyServiceErrorClass.BLOCKED_BY_OPTIONS);
}
// if that failed, we try to validate on the server
if (noTerminologyServer) {
return new ValidationResult(IssueSeverity.ERROR, "Error validating code: running without terminology services", TerminologyServiceErrorClass.NOSERVICE);
}
tlog("$validate " + txCache.summary(code) + " for " + txCache.summary(vs));
try {
Parameters pIn = new Parameters();
pIn.addParameter().setName("codeableConcept").setValue(code);
setTerminologyOptions(options, pIn);
res = validateOnServer(vs, pIn, options);
} catch (Exception e) {
res = new ValidationResult(IssueSeverity.ERROR, e.getMessage() == null ? e.getClass().getName() : e.getMessage()).setTxLink(txLog.getLastId());
}
txCache.cacheValidation(cacheToken, res, TerminologyCache.PERMANENT);
return res;
}
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