Examples with CanonicalResource org.hl7.fhir.r4b.model.CanonicalResource used on opensource projects

Example 16 with CanonicalResource

use of org.hl7.fhir.r4b.model.CanonicalResource in project org.hl7.fhir.core by hapifhir.

the class BaseWorkerContext method cacheResourceFromPackage.

public void cacheResourceFromPackage(Resource r, PackageVersion packageInfo) throws FHIRException {
    synchronized (lock) {
        if (r.getId() != null) {
            Map<String, ResourceProxy> map = allResourcesById.get(r.fhirType());
            if (map == null) {
                map = new HashMap<String, ResourceProxy>();
                allResourcesById.put(r.fhirType(), map);
            }
            if ((packageInfo == null || !packageInfo.isExamplesPackage()) || !map.containsKey(r.getId())) {
                map.put(r.getId(), new ResourceProxy(r));
            } else {
                logger.logDebugMessage(LogCategory.PROGRESS, "Ignore " + r.fhirType() + "/" + r.getId() + " from package " + packageInfo.toString());
            }
        }
        if (r instanceof CodeSystem || r instanceof NamingSystem) {
            oidCache.clear();
        }
        if (r instanceof CanonicalResource) {
            CanonicalResource m = (CanonicalResource) r;
            String url = m.getUrl();
            if (!allowLoadingDuplicates && hasResource(r.getClass(), url)) {
                // special workaround for known problems with existing packages
                if (Utilities.existsInList(url, "http://hl7.org/fhir/SearchParameter/example")) {
                    return;
                }
                throw new DefinitionException(formatMessage(I18nConstants.DUPLICATE_RESOURCE_, url));
            }
            if (r instanceof StructureDefinition) {
                StructureDefinition sd = (StructureDefinition) m;
                if ("1.4.0".equals(version)) {
                    fixOldSD(sd);
                }
                structures.see(sd, packageInfo);
            } else if (r instanceof ValueSet) {
                valueSets.see((ValueSet) m, packageInfo);
            } else if (r instanceof CodeSystem) {
                CodeSystemUtilities.crossLinkCodeSystem((CodeSystem) r);
                codeSystems.see((CodeSystem) m, packageInfo);
            } else if (r instanceof ImplementationGuide) {
                guides.see((ImplementationGuide) m, packageInfo);
            } else if (r instanceof CapabilityStatement) {
                capstmts.see((CapabilityStatement) m, packageInfo);
            } else if (r instanceof Measure) {
                measures.see((Measure) m, packageInfo);
            } else if (r instanceof Library) {
                libraries.see((Library) m, packageInfo);
            } else if (r instanceof SearchParameter) {
                searchParameters.see((SearchParameter) m, packageInfo);
            } else if (r instanceof PlanDefinition) {
                plans.see((PlanDefinition) m, packageInfo);
            } else if (r instanceof OperationDefinition) {
                operations.see((OperationDefinition) m, packageInfo);
            } else if (r instanceof Questionnaire) {
                questionnaires.see((Questionnaire) m, packageInfo);
            } else if (r instanceof ConceptMap) {
                maps.see((ConceptMap) m, packageInfo);
            } else if (r instanceof StructureMap) {
                transforms.see((StructureMap) m, packageInfo);
            } else if (r instanceof NamingSystem) {
                systems.see((NamingSystem) m, packageInfo);
            }
        }
    }
}

Example 17 with CanonicalResource

use of org.hl7.fhir.r4b.model.CanonicalResource in project org.hl7.fhir.core by hapifhir.

the class SimpleWorkerContext method loadFromFile.

public void loadFromFile(InputStream stream, String name, IContextResourceLoader loader, ILoadFilter filter) throws FHIRException {
    Resource f;
    try {
        if (loader != null)
            f = loader.loadBundle(stream, false);
        else {
            XmlParser xml = new XmlParser();
            f = xml.parse(stream);
        }
    } catch (DataFormatException e1) {
        throw new org.hl7.fhir.exceptions.FHIRFormatError(formatMessage(I18nConstants.ERROR_PARSING_, name, e1.getMessage()), e1);
    } catch (Exception e1) {
        throw new org.hl7.fhir.exceptions.FHIRFormatError(formatMessage(I18nConstants.ERROR_PARSING_, name, e1.getMessage()), e1);
    }
    if (f instanceof Bundle) {
        Bundle bnd = (Bundle) f;
        for (BundleEntryComponent e : bnd.getEntry()) {
            if (e.getFullUrl() == null) {
                logger.logDebugMessage(LogCategory.CONTEXT, "unidentified resource in " + name + " (no fullUrl)");
            }
            if (filter == null || filter.isOkToLoad(e.getResource())) {
                String path = loader != null ? loader.getResourcePath(e.getResource()) : null;
                if (path != null) {
                    e.getResource().setUserData("path", path);
                }
                cacheResource(e.getResource());
            }
        }
    } else if (f instanceof CanonicalResource) {
        if (filter == null || filter.isOkToLoad(f)) {
            String path = loader != null ? loader.getResourcePath(f) : null;
            if (path != null) {
                f.setUserData("path", path);
            }
            cacheResource(f);
        }
    }
}

Example 18 with CanonicalResource

use of org.hl7.fhir.r4b.model.CanonicalResource in project org.hl7.fhir.core by hapifhir.

the class TerminologyRenderer method AddVsRef.

protected void AddVsRef(String value, XhtmlNode li) {
    Resource res = null;
    if (rcontext != null) {
        BundleEntryComponent be = rcontext.resolve(value);
        if (be != null) {
            res = be.getResource();
        }
    }
    if (res != null && !(res instanceof CanonicalResource)) {
        li.addText(value);
        return;
    }
    CanonicalResource vs = (CanonicalResource) res;
    if (vs == null)
        vs = getContext().getWorker().fetchResource(ValueSet.class, value);
    if (vs == null)
        vs = getContext().getWorker().fetchResource(StructureDefinition.class, value);
    // vs = context.getWorker().fetchResource(DataElement.class, value);
    if (vs == null)
        vs = getContext().getWorker().fetchResource(Questionnaire.class, value);
    if (vs != null) {
        String ref = (String) vs.getUserData("path");
        ref = context.fixReference(ref);
        XhtmlNode a = li.ah(ref == null ? "?ngen-11?" : ref.replace("\\", "/"));
        a.addText(value);
    } else {
        CodeSystem cs = getContext().getWorker().fetchCodeSystem(value);
        if (cs != null) {
            String ref = (String) cs.getUserData("path");
            ref = context.fixReference(ref);
            XhtmlNode a = li.ah(ref == null ? "?ngen-12?" : ref.replace("\\", "/"));
            a.addText(value);
        } else if (value.equals("http://snomed.info/sct") || value.equals("http://snomed.info/id")) {
            XhtmlNode a = li.ah(value);
            a.tx("SNOMED-CT");
        } else {
            if (value.startsWith("http://hl7.org") && !Utilities.existsInList(value, "http://hl7.org/fhir/sid/icd-10-us"))
                System.out.println("Unable to resolve value set " + value);
            li.addText(value);
        }
    }
}

Example 19 with CanonicalResource

use of org.hl7.fhir.r4b.model.CanonicalResource in project org.hl7.fhir.core by hapifhir.

the class ValidationService method generateSpreadsheet.

public void generateSpreadsheet(CliContext cliContext, ValidationEngine validator) throws Exception {
    CanonicalResource cr = validator.loadCanonicalResource(cliContext.getSources().get(0), cliContext.getSv());
    boolean ok = true;
    if (cr instanceof StructureDefinition) {
        new StructureDefinitionSpreadsheetGenerator(validator.getContext(), false, false).renderStructureDefinition((StructureDefinition) cr).finish(new FileOutputStream(cliContext.getOutput()));
    } else if (cr instanceof CodeSystem) {
        new CodeSystemSpreadsheetGenerator(validator.getContext()).renderCodeSystem((CodeSystem) cr).finish(new FileOutputStream(cliContext.getOutput()));
    } else if (cr instanceof ValueSet) {
        new ValueSetSpreadsheetGenerator(validator.getContext()).renderValueSet((ValueSet) cr).finish(new FileOutputStream(cliContext.getOutput()));
    } else if (cr instanceof ConceptMap) {
        new ConceptMapSpreadsheetGenerator(validator.getContext()).renderConceptMap((ConceptMap) cr).finish(new FileOutputStream(cliContext.getOutput()));
    } else {
        ok = false;
        System.out.println(" ...Unable to generate spreadsheet for " + cliContext.getSources().get(0) + ": no way to generate a spreadsheet for a " + cr.fhirType());
    }
    if (ok) {
        System.out.println(" ...generated spreadsheet successfully");
    }
}

Example 20 with CanonicalResource

use of org.hl7.fhir.r4b.model.CanonicalResource in project org.hl7.fhir.core by hapifhir.

the class ValidationEngine method loadCanonicalResource.

public CanonicalResource loadCanonicalResource(String source, String version) throws FHIRException, IOException {
    Content cnt = igLoader.loadContent(source, "validate", false);
    Resource res = igLoader.loadResourceByVersion(version, cnt.focus, Utilities.getFileNameForName(source));
    if (!(res instanceof CanonicalResource))
        throw new FHIRException("Require a CanonicalResource");
    return (CanonicalResource) res;
}