Examples with ConceptMap org.hl7.fhir.r4b.model.ConceptMap used on opensource projects

Example 31 with ConceptMap

use of org.hl7.fhir.r4b.model.ConceptMap in project org.hl7.fhir.core by hapifhir.

the class NarrativeGenerator method addExpansionRowToTable.

private void addExpansionRowToTable(XhtmlNode t, ValueSetExpansionContainsComponent c, int i, boolean doSystem, Map<ConceptMap, String> mymaps) {
    XhtmlNode tr = t.addTag("tr");
    XhtmlNode td = tr.addTag("td");
    String tgt = makeAnchor(c.getSystem(), c.getCode());
    td.addTag("a").setAttribute("name", tgt).addText(" ");
    String s = Utilities.padLeft("", '.', i * 2);
    td.addText(s);
    Resource e = context.fetchCodeSystem(c.getSystem());
    if (e == null)
        td.addText(c.getCode());
    else {
        XhtmlNode a = td.addTag("a");
        a.addText(c.getCode());
        a.setAttribute("href", prefix + getCsRef(e) + "#" + Utilities.nmtokenize(c.getCode()));
    }
    if (doSystem) {
        td = tr.addTag("td");
        td.addText(c.getSystem());
    }
    td = tr.addTag("td");
    if (c.hasDisplayElement())
        td.addText(c.getDisplay());
    for (ConceptMap m : mymaps.keySet()) {
        td = tr.addTag("td");
        List<TargetElementComponent> mappings = findMappingsForCode(c.getCode(), m);
        boolean first = true;
        for (TargetElementComponent mapping : mappings) {
            if (!first)
                td.addTag("br");
            first = false;
            XhtmlNode span = td.addTag("span");
            span.setAttribute("title", mapping.getEquivalence().toString());
            span.addText(getCharForEquivalence(mapping));
            XhtmlNode a = td.addTag("a");
            a.setAttribute("href", prefix + mymaps.get(m) + "#" + mapping.getCode());
            a.addText(mapping.getCode());
            if (!Utilities.noString(mapping.getComments()))
                td.addTag("i").addText("(" + mapping.getComments() + ")");
        }
    }
    for (ValueSetExpansionContainsComponent cc : c.getContains()) {
        addExpansionRowToTable(t, cc, i + 1, doSystem, mymaps);
    }
}

Example 32 with ConceptMap

use of org.hl7.fhir.r4b.model.ConceptMap in project org.hl7.fhir.core by hapifhir.

the class RdfParser method composeConceptMap.

protected void composeConceptMap(Complex parent, String parentType, String name, ConceptMap element, int index) {
    if (element == null)
        return;
    Complex t;
    if (Utilities.noString(parentType))
        t = parent;
    else {
        t = parent.predicate("fhir:" + parentType + '.' + name);
    }
    composeDomainResource(t, "ConceptMap", name, element, index);
    if (element.hasUrlElement())
        composeUri(t, "ConceptMap", "url", element.getUrlElement(), -1);
    if (element.hasIdentifier())
        composeIdentifier(t, "ConceptMap", "identifier", element.getIdentifier(), -1);
    if (element.hasVersionElement())
        composeString(t, "ConceptMap", "version", element.getVersionElement(), -1);
    if (element.hasNameElement())
        composeString(t, "ConceptMap", "name", element.getNameElement(), -1);
    if (element.hasStatusElement())
        composeEnum(t, "ConceptMap", "status", element.getStatusElement(), -1);
    if (element.hasExperimentalElement())
        composeBoolean(t, "ConceptMap", "experimental", element.getExperimentalElement(), -1);
    if (element.hasPublisherElement())
        composeString(t, "ConceptMap", "publisher", element.getPublisherElement(), -1);
    for (int i = 0; i < element.getContact().size(); i++) composeConceptMapConceptMapContactComponent(t, "ConceptMap", "contact", element.getContact().get(i), i);
    if (element.hasDateElement())
        composeDateTime(t, "ConceptMap", "date", element.getDateElement(), -1);
    if (element.hasDescriptionElement())
        composeString(t, "ConceptMap", "description", element.getDescriptionElement(), -1);
    for (int i = 0; i < element.getUseContext().size(); i++) composeCodeableConcept(t, "ConceptMap", "useContext", element.getUseContext().get(i), i);
    if (element.hasRequirementsElement())
        composeString(t, "ConceptMap", "requirements", element.getRequirementsElement(), -1);
    if (element.hasCopyrightElement())
        composeString(t, "ConceptMap", "copyright", element.getCopyrightElement(), -1);
    if (element.hasSource())
        composeType(t, "ConceptMap", "source", element.getSource(), -1);
    if (element.hasTarget())
        composeType(t, "ConceptMap", "target", element.getTarget(), -1);
    for (int i = 0; i < element.getElement().size(); i++) composeConceptMapSourceElementComponent(t, "ConceptMap", "element", element.getElement().get(i), i);
}

Example 33 with ConceptMap

use of org.hl7.fhir.r4b.model.ConceptMap in project org.hl7.fhir.core by hapifhir.

the class RdfParser method composeConceptMapTargetElementComponent.

protected void composeConceptMapTargetElementComponent(Complex parent, String parentType, String name, ConceptMap.TargetElementComponent element, int index) {
    if (element == null)
        return;
    Complex t;
    if (Utilities.noString(parentType))
        t = parent;
    else {
        t = parent.predicate("fhir:" + parentType + '.' + name);
    }
    composeBackboneElement(t, "target", name, element, index);
    if (element.hasSystemElement())
        composeUri(t, "ConceptMap", "system", element.getSystemElement(), -1);
    if (element.hasVersionElement())
        composeString(t, "ConceptMap", "version", element.getVersionElement(), -1);
    if (element.hasCodeElement())
        composeCode(t, "ConceptMap", "code", element.getCodeElement(), -1);
    if (element.hasEquivalenceElement())
        composeEnum(t, "ConceptMap", "equivalence", element.getEquivalenceElement(), -1);
    if (element.hasCommentsElement())
        composeString(t, "ConceptMap", "comments", element.getCommentsElement(), -1);
    for (int i = 0; i < element.getDependsOn().size(); i++) composeConceptMapOtherElementComponent(t, "ConceptMap", "dependsOn", element.getDependsOn().get(i), i);
    for (int i = 0; i < element.getProduct().size(); i++) composeConceptMapOtherElementComponent(t, "ConceptMap", "product", element.getProduct().get(i), i);
}

Example 34 with ConceptMap

use of org.hl7.fhir.r4b.model.ConceptMap in project org.hl7.fhir.core by hapifhir.

the class NarrativeGenerator method generate.

public void generate(ConceptMap cm) {
    XhtmlNode x = new XhtmlNode(NodeType.Element, "div");
    x.addTag("h2").addText(cm.getName() + " (" + cm.getUrl() + ")");
    XhtmlNode p = x.addTag("p");
    p.addText("Mapping from ");
    AddVsRef(((Reference) cm.getSource()).getReference(), p);
    p.addText(" to ");
    AddVsRef(((Reference) cm.getTarget()).getReference(), p);
    p = x.addTag("p");
    if (cm.getExperimental())
        p.addText(Utilities.capitalize(cm.getStatus().toString()) + " (not intended for production usage). ");
    else
        p.addText(Utilities.capitalize(cm.getStatus().toString()) + ". ");
    p.addText("Published on " + cm.getDateElement().toHumanDisplay() + " by " + cm.getPublisher());
    if (!cm.getContact().isEmpty()) {
        p.addText(" (");
        boolean firsti = true;
        for (ConceptMapContactComponent ci : cm.getContact()) {
            if (firsti)
                firsti = false;
            else
                p.addText(", ");
            if (ci.hasName())
                p.addText(ci.getName() + ": ");
            boolean first = true;
            for (ContactPoint c : ci.getTelecom()) {
                if (first)
                    first = false;
                else
                    p.addText(", ");
                addTelecom(p, c);
            }
            p.addText("; ");
        }
        p.addText(")");
    }
    p.addText(". ");
    p.addText(cm.getCopyright());
    if (!Utilities.noString(cm.getDescription()))
        x.addTag("p").addText(cm.getDescription());
    x.addTag("br");
    if (!cm.getElement().isEmpty()) {
        SourceElementComponent cc = cm.getElement().get(0);
        String src = cc.getSystem();
        boolean comments = false;
        boolean ok = cc.getTarget().size() == 1;
        Map<String, HashSet<String>> sources = new HashMap<String, HashSet<String>>();
        sources.put("code", new HashSet<String>());
        Map<String, HashSet<String>> targets = new HashMap<String, HashSet<String>>();
        targets.put("code", new HashSet<String>());
        if (ok) {
            String dst = cc.getTarget().get(0).getSystem();
            for (SourceElementComponent ccl : cm.getElement()) {
                ok = ok && src.equals(ccl.getSystem()) && ccl.getTarget().size() == 1 && dst.equals(ccl.getTarget().get(0).getSystem()) && ccl.getTarget().get(0).getDependsOn().isEmpty() && ccl.getTarget().get(0).getProduct().isEmpty();
                if (ccl.hasSystem())
                    sources.get("code").add(ccl.getSystem());
                for (TargetElementComponent ccm : ccl.getTarget()) {
                    comments = comments || !Utilities.noString(ccm.getComments());
                    for (OtherElementComponent d : ccm.getDependsOn()) {
                        if (!sources.containsKey(d.getElement()))
                            sources.put(d.getElement(), new HashSet<String>());
                        sources.get(d.getElement()).add(d.getSystem());
                    }
                    if (ccm.hasSystem())
                        targets.get("code").add(ccm.getSystem());
                    for (OtherElementComponent d : ccm.getProduct()) {
                        if (!targets.containsKey(d.getElement()))
                            targets.put(d.getElement(), new HashSet<String>());
                        targets.get(d.getElement()).add(d.getSystem());
                    }
                }
            }
        }
        String display;
        if (ok) {
            // simple
            XhtmlNode tbl = x.addTag("table").setAttribute("class", "grid");
            XhtmlNode tr = tbl.addTag("tr");
            tr.addTag("td").addTag("b").addText("Source Code");
            tr.addTag("td").addTag("b").addText("Equivalence");
            tr.addTag("td").addTag("b").addText("Destination Code");
            if (comments)
                tr.addTag("td").addTag("b").addText("Comments");
            for (SourceElementComponent ccl : cm.getElement()) {
                tr = tbl.addTag("tr");
                XhtmlNode td = tr.addTag("td");
                td.addText(ccl.getCode());
                display = getDisplayForConcept(ccl.getSystem(), ccl.getCode());
                if (display != null)
                    td.addText(" (" + display + ")");
                TargetElementComponent ccm = ccl.getTarget().get(0);
                tr.addTag("td").addText(!ccm.hasEquivalence() ? "" : ccm.getEquivalence().toCode());
                td = tr.addTag("td");
                td.addText(ccm.getCode());
                display = getDisplayForConcept(ccm.getSystem(), ccm.getCode());
                if (display != null)
                    td.addText(" (" + display + ")");
                if (comments)
                    tr.addTag("td").addText(ccm.getComments());
            }
        } else {
            XhtmlNode tbl = x.addTag("table").setAttribute("class", "grid");
            XhtmlNode tr = tbl.addTag("tr");
            XhtmlNode td;
            tr.addTag("td").setAttribute("colspan", Integer.toString(sources.size())).addTag("b").addText("Source Concept");
            tr.addTag("td").addTag("b").addText("Equivalence");
            tr.addTag("td").setAttribute("colspan", Integer.toString(targets.size())).addTag("b").addText("Destination Concept");
            if (comments)
                tr.addTag("td").addTag("b").addText("Comments");
            tr = tbl.addTag("tr");
            if (sources.get("code").size() == 1)
                tr.addTag("td").addTag("b").addText("Code " + sources.get("code").toString() + "");
            else
                tr.addTag("td").addTag("b").addText("Code");
            for (String s : sources.keySet()) {
                if (!s.equals("code")) {
                    if (sources.get(s).size() == 1)
                        tr.addTag("td").addTag("b").addText(getDescForConcept(s) + " " + sources.get(s).toString());
                    else
                        tr.addTag("td").addTag("b").addText(getDescForConcept(s));
                }
            }
            tr.addTag("td");
            if (targets.get("code").size() == 1)
                tr.addTag("td").addTag("b").addText("Code " + targets.get("code").toString());
            else
                tr.addTag("td").addTag("b").addText("Code");
            for (String s : targets.keySet()) {
                if (!s.equals("code")) {
                    if (targets.get(s).size() == 1)
                        tr.addTag("td").addTag("b").addText(getDescForConcept(s) + " " + targets.get(s).toString() + "");
                    else
                        tr.addTag("td").addTag("b").addText(getDescForConcept(s));
                }
            }
            if (comments)
                tr.addTag("td");
            for (SourceElementComponent ccl : cm.getElement()) {
                tr = tbl.addTag("tr");
                td = tr.addTag("td");
                if (sources.get("code").size() == 1)
                    td.addText(ccl.getCode());
                else
                    td.addText(ccl.getSystem() + " / " + ccl.getCode());
                display = getDisplayForConcept(ccl.getSystem(), ccl.getCode());
                if (display != null)
                    td.addText(" (" + display + ")");
                TargetElementComponent ccm = ccl.getTarget().get(0);
                for (String s : sources.keySet()) {
                    if (!s.equals("code")) {
                        td = tr.addTag("td");
                        td.addText(getCode(ccm.getDependsOn(), s, sources.get(s).size() != 1));
                        display = getDisplay(ccm.getDependsOn(), s);
                        if (display != null)
                            td.addText(" (" + display + ")");
                    }
                }
                tr.addTag("td").addText(ccm.getEquivalence().toString());
                td = tr.addTag("td");
                if (targets.get("code").size() == 1)
                    td.addText(ccm.getCode());
                else
                    td.addText(ccm.getSystem() + " / " + ccm.getCode());
                display = getDisplayForConcept(ccm.getSystem(), ccm.getCode());
                if (display != null)
                    td.addText(" (" + display + ")");
                for (String s : targets.keySet()) {
                    if (!s.equals("code")) {
                        td = tr.addTag("td");
                        td.addText(getCode(ccm.getProduct(), s, targets.get(s).size() != 1));
                        display = getDisplay(ccm.getProduct(), s);
                        if (display != null)
                            td.addText(" (" + display + ")");
                    }
                }
                if (comments)
                    tr.addTag("td").addText(ccm.getComments());
            }
        }
    }
    inject(cm, x, NarrativeStatus.GENERATED);
}

Example 35 with ConceptMap

use of org.hl7.fhir.r4b.model.ConceptMap in project org.hl7.fhir.core by hapifhir.

the class NarrativeGenerator method addDefineRowToTable.

private boolean addDefineRowToTable(XhtmlNode t, ConceptDefinitionComponent c, int i, boolean hasHierarchy, boolean hasDisplay, boolean comment, boolean deprecated, Map<ConceptMap, String> maps, String system, CodeSystem cs) {
    boolean hasExtensions = false;
    XhtmlNode tr = t.addTag("tr");
    XhtmlNode td = tr.addTag("td");
    if (hasHierarchy) {
        td.addText(Integer.toString(i + 1));
        td = tr.addTag("td");
        String s = Utilities.padLeft("", '\u00A0', i * 2);
        td.addText(s);
    }
    td.addText(c.getCode());
    XhtmlNode a;
    if (c.hasCodeElement()) {
        a = td.addTag("a");
        a.setAttribute("name", Utilities.nmtokenize(c.getCode()));
        a.addText(" ");
    }
    if (hasDisplay) {
        td = tr.addTag("td");
        if (c.hasDisplayElement())
            td.addText(c.getDisplay());
    }
    td = tr.addTag("td");
    if (c != null)
        smartAddText(td, c.getDefinition());
    if (deprecated) {
        td = tr.addTag("td");
        Boolean b = CodeSystemUtilities.isDeprecated(cs, c);
        if (b != null && b) {
            smartAddText(td, "Deprecated");
            hasExtensions = true;
            if (ToolingExtensions.hasExtension(c, ToolingExtensions.EXT_REPLACED_BY)) {
                Coding cc = (Coding) ToolingExtensions.getExtension(c, ToolingExtensions.EXT_REPLACED_BY).getValue();
                td.addText(" (replaced by ");
                String url = getCodingReference(cc, system);
                if (url != null) {
                    td.addTag("a").setAttribute("href", url).addText(cc.getCode());
                    td.addText(": " + cc.getDisplay() + ")");
                } else
                    td.addText(cc.getCode() + " '" + cc.getDisplay() + "' in " + cc.getSystem() + ")");
            }
        }
    }
    if (comment) {
        td = tr.addTag("td");
        String s = ToolingExtensions.getComment(c);
        if (s != null) {
            smartAddText(td, s);
            hasExtensions = true;
        }
    }
    for (ConceptMap m : maps.keySet()) {
        td = tr.addTag("td");
        List<TargetElementComponent> mappings = findMappingsForCode(c.getCode(), m);
        boolean first = true;
        for (TargetElementComponent mapping : mappings) {
            if (!first)
                td.addTag("br");
            first = false;
            XhtmlNode span = td.addTag("span");
            span.setAttribute("title", mapping.hasEquivalence() ? mapping.getEquivalence().toCode() : "");
            span.addText(getCharForEquivalence(mapping));
            a = td.addTag("a");
            a.setAttribute("href", prefix + maps.get(m) + "#" + makeAnchor(mapping.getSystem(), mapping.getCode()));
            a.addText(mapping.getCode());
            if (!Utilities.noString(mapping.getComments()))
                td.addTag("i").addText("(" + mapping.getComments() + ")");
        }
    }
    for (CodeType e : ToolingExtensions.getSubsumes(c)) {
        hasExtensions = true;
        tr = t.addTag("tr");
        td = tr.addTag("td");
        String s = Utilities.padLeft("", '.', i * 2);
        td.addText(s);
        a = td.addTag("a");
        a.setAttribute("href", "#" + Utilities.nmtokenize(e.getValue()));
        a.addText(c.getCode());
    }
    for (ConceptDefinitionComponent cc : c.getConcept()) {
        hasExtensions = addDefineRowToTable(t, cc, i + 1, hasHierarchy, hasDisplay, comment, deprecated, maps, system, cs) || hasExtensions;
    }
    return hasExtensions;
}