Examples with ConceptMap org.hl7.fhir.r4b.model.ConceptMap used on opensource projects

Example 51 with ConceptMap

use of org.hl7.fhir.r4b.model.ConceptMap in project org.hl7.fhir.core by hapifhir.

the class BaseWorkerContext method registerResourceFromPackage.

public void registerResourceFromPackage(CanonicalResourceProxy r, PackageVersion packageInfo) throws FHIRException {
    synchronized (lock) {
        if (r.getId() != null) {
            Map<String, ResourceProxy> map = allResourcesById.get(r.getType());
            if (map == null) {
                map = new HashMap<String, ResourceProxy>();
                allResourcesById.put(r.getType(), map);
            }
            if ((packageInfo == null || !packageInfo.isExamplesPackage()) || !map.containsKey(r.getId())) {
                map.put(r.getId(), new ResourceProxy(r));
            }
        }
        String url = r.getUrl();
        if (!allowLoadingDuplicates && hasResource(r.getType(), url)) {
            // spcial workaround for known problems with existing packages
            if (Utilities.existsInList(url, "http://hl7.org/fhir/SearchParameter/example")) {
                return;
            }
            throw new DefinitionException(formatMessage(I18nConstants.DUPLICATE_RESOURCE_, url));
        }
        switch(r.getType()) {
            case "StructureDefinition":
                if ("1.4.0".equals(version)) {
                    StructureDefinition sd = (StructureDefinition) r.getResource();
                    fixOldSD(sd);
                }
                structures.register(r, packageInfo);
                break;
            case "ValueSet":
                valueSets.register(r, packageInfo);
                break;
            case "CodeSystem":
                codeSystems.register(r, packageInfo);
                break;
            case "ImplementationGuide":
                guides.register(r, packageInfo);
                break;
            case "CapabilityStatement":
                capstmts.register(r, packageInfo);
                break;
            case "Measure":
                measures.register(r, packageInfo);
                break;
            case "Library":
                libraries.register(r, packageInfo);
                break;
            case "SearchParameter":
                searchParameters.register(r, packageInfo);
                break;
            case "PlanDefinition":
                plans.register(r, packageInfo);
                break;
            case "OperationDefinition":
                operations.register(r, packageInfo);
                break;
            case "Questionnaire":
                questionnaires.register(r, packageInfo);
                break;
            case "ConceptMap":
                maps.register(r, packageInfo);
                break;
            case "StructureMap":
                transforms.register(r, packageInfo);
                break;
            case "NamingSystem":
                systems.register(r, packageInfo);
                break;
        }
    }
}

Example 52 with ConceptMap

use of org.hl7.fhir.r4b.model.ConceptMap in project org.hl7.fhir.core by hapifhir.

the class BaseWorkerContext method cacheResourceFromPackage.

public void cacheResourceFromPackage(Resource r, PackageVersion packageInfo) throws FHIRException {
    synchronized (lock) {
        if (r.getId() != null) {
            Map<String, ResourceProxy> map = allResourcesById.get(r.fhirType());
            if (map == null) {
                map = new HashMap<String, ResourceProxy>();
                allResourcesById.put(r.fhirType(), map);
            }
            if ((packageInfo == null || !packageInfo.isExamplesPackage()) || !map.containsKey(r.getId())) {
                map.put(r.getId(), new ResourceProxy(r));
            } else {
                logger.logDebugMessage(LogCategory.PROGRESS, "Ignore " + r.fhirType() + "/" + r.getId() + " from package " + packageInfo.toString());
            }
        }
        if (r instanceof CodeSystem || r instanceof NamingSystem) {
            oidCache.clear();
        }
        if (r instanceof CanonicalResource) {
            CanonicalResource m = (CanonicalResource) r;
            String url = m.getUrl();
            if (!allowLoadingDuplicates && hasResource(r.getClass(), url)) {
                // special workaround for known problems with existing packages
                if (Utilities.existsInList(url, "http://hl7.org/fhir/SearchParameter/example")) {
                    return;
                }
                throw new DefinitionException(formatMessage(I18nConstants.DUPLICATE_RESOURCE_, url));
            }
            if (r instanceof StructureDefinition) {
                StructureDefinition sd = (StructureDefinition) m;
                if ("1.4.0".equals(version)) {
                    fixOldSD(sd);
                }
                structures.see(sd, packageInfo);
            } else if (r instanceof ValueSet) {
                valueSets.see((ValueSet) m, packageInfo);
            } else if (r instanceof CodeSystem) {
                CodeSystemUtilities.crossLinkCodeSystem((CodeSystem) r);
                codeSystems.see((CodeSystem) m, packageInfo);
            } else if (r instanceof ImplementationGuide) {
                guides.see((ImplementationGuide) m, packageInfo);
            } else if (r instanceof CapabilityStatement) {
                capstmts.see((CapabilityStatement) m, packageInfo);
            } else if (r instanceof Measure) {
                measures.see((Measure) m, packageInfo);
            } else if (r instanceof Library) {
                libraries.see((Library) m, packageInfo);
            } else if (r instanceof SearchParameter) {
                searchParameters.see((SearchParameter) m, packageInfo);
            } else if (r instanceof PlanDefinition) {
                plans.see((PlanDefinition) m, packageInfo);
            } else if (r instanceof OperationDefinition) {
                operations.see((OperationDefinition) m, packageInfo);
            } else if (r instanceof Questionnaire) {
                questionnaires.see((Questionnaire) m, packageInfo);
            } else if (r instanceof ConceptMap) {
                maps.see((ConceptMap) m, packageInfo);
            } else if (r instanceof StructureMap) {
                transforms.see((StructureMap) m, packageInfo);
            } else if (r instanceof NamingSystem) {
                systems.see((NamingSystem) m, packageInfo);
            }
        }
    }
}

Example 53 with ConceptMap

use of org.hl7.fhir.r4b.model.ConceptMap in project org.hl7.fhir.core by hapifhir.

the class ConceptMapSpreadsheetGenerator method renderConceptMap.

public ConceptMapSpreadsheetGenerator renderConceptMap(ConceptMap cm) {
    addConceptMapMetadata(renderCanonicalResource(cm), cm);
    int i = 0;
    for (ConceptMapGroupComponent grp : cm.getGroup()) {
        renderGroup(grp, i);
        i++;
    }
    return this;
}

Example 54 with ConceptMap

use of org.hl7.fhir.r4b.model.ConceptMap in project org.hl7.fhir.core by hapifhir.

the class ValidationService method generateSpreadsheet.

public void generateSpreadsheet(CliContext cliContext, ValidationEngine validator) throws Exception {
    CanonicalResource cr = validator.loadCanonicalResource(cliContext.getSources().get(0), cliContext.getSv());
    boolean ok = true;
    if (cr instanceof StructureDefinition) {
        new StructureDefinitionSpreadsheetGenerator(validator.getContext(), false, false).renderStructureDefinition((StructureDefinition) cr).finish(new FileOutputStream(cliContext.getOutput()));
    } else if (cr instanceof CodeSystem) {
        new CodeSystemSpreadsheetGenerator(validator.getContext()).renderCodeSystem((CodeSystem) cr).finish(new FileOutputStream(cliContext.getOutput()));
    } else if (cr instanceof ValueSet) {
        new ValueSetSpreadsheetGenerator(validator.getContext()).renderValueSet((ValueSet) cr).finish(new FileOutputStream(cliContext.getOutput()));
    } else if (cr instanceof ConceptMap) {
        new ConceptMapSpreadsheetGenerator(validator.getContext()).renderConceptMap((ConceptMap) cr).finish(new FileOutputStream(cliContext.getOutput()));
    } else {
        ok = false;
        System.out.println(" ...Unable to generate spreadsheet for " + cliContext.getSources().get(0) + ": no way to generate a spreadsheet for a " + cr.fhirType());
    }
    if (ok) {
        System.out.println(" ...generated spreadsheet successfully");
    }
}

Example 55 with ConceptMap

use of org.hl7.fhir.r4b.model.ConceptMap in project org.hl7.fhir.core by hapifhir.

the class StructureMapUtilities method produceConceptMap.

private static void produceConceptMap(StringBuilder b, ConceptMap cm) {
    b.append("conceptmap \"");
    b.append(cm.getId());
    b.append("\" {\r\n");
    Map<String, String> prefixesSrc = new HashMap<String, String>();
    Map<String, String> prefixesTgt = new HashMap<String, String>();
    char prefix = 's';
    for (ConceptMapGroupComponent cg : cm.getGroup()) {
        if (!prefixesSrc.containsKey(cg.getSource())) {
            prefixesSrc.put(cg.getSource(), String.valueOf(prefix));
            b.append("  prefix ");
            b.append(prefix);
            b.append(" = \"");
            b.append(cg.getSource());
            b.append("\"\r\n");
            prefix++;
        }
        if (!prefixesTgt.containsKey(cg.getTarget())) {
            prefixesTgt.put(cg.getTarget(), String.valueOf(prefix));
            b.append("  prefix ");
            b.append(prefix);
            b.append(" = \"");
            b.append(cg.getTarget());
            b.append("\"\r\n");
            prefix++;
        }
    }
    b.append("\r\n");
    for (ConceptMapGroupComponent cg : cm.getGroup()) {
        if (cg.hasUnmapped()) {
            b.append("  unmapped for ");
            b.append(prefix);
            b.append(" = ");
            b.append(cg.getUnmapped().getMode());
            b.append("\r\n");
        }
    }
    for (ConceptMapGroupComponent cg : cm.getGroup()) {
        for (SourceElementComponent ce : cg.getElement()) {
            b.append("  ");
            b.append(prefixesSrc.get(cg.getSource()));
            b.append(":");
            b.append(ce.getCode());
            b.append(" ");
            b.append(getChar(ce.getTargetFirstRep().getEquivalence()));
            b.append(" ");
            b.append(prefixesTgt.get(cg.getTarget()));
            b.append(":");
            b.append(ce.getTargetFirstRep().getCode());
            b.append("\r\n");
        }
    }
    b.append("}\r\n\r\n");
}