use of org.hl7.fhir.r4b.model.DataType in project clinical_quality_language by cqframework.
the class DataRequirementsProcessor method toFhirValue.
private DataType toFhirValue(ElmRequirementsContext context, Expression value) {
if (value == null) {
return null;
}
if (value instanceof Interval) {
// TODO: Handle lowclosed/highclosed
return new Period().setStartElement(toFhirDateTimeValue(context, ((Interval) value).getLow())).setEndElement(toFhirDateTimeValue(context, ((Interval) value).getHigh()));
} else if (value instanceof Literal) {
if (context.getTypeResolver().isDateTimeType(value.getResultType())) {
return new DateTimeType(((Literal) value).getValue());
} else if (context.getTypeResolver().isDateType(value.getResultType())) {
return new DateType(((Literal) value).getValue());
} else if (context.getTypeResolver().isIntegerType(value.getResultType())) {
return new IntegerType(((Literal) value).getValue());
} else if (context.getTypeResolver().isDecimalType(value.getResultType())) {
return new DecimalType(((Literal) value).getValue());
} else if (context.getTypeResolver().isStringType(value.getResultType())) {
return new StringType(((Literal) value).getValue());
}
} else if (value instanceof DateTime) {
DateTime dateTime = (DateTime) value;
return new DateTimeType(toDateTimeString(toFhirValue(context, dateTime.getYear()), toFhirValue(context, dateTime.getMonth()), toFhirValue(context, dateTime.getDay()), toFhirValue(context, dateTime.getHour()), toFhirValue(context, dateTime.getMinute()), toFhirValue(context, dateTime.getSecond()), toFhirValue(context, dateTime.getMillisecond()), toFhirValue(context, dateTime.getTimezoneOffset())));
} else if (value instanceof org.hl7.elm.r1.Date) {
org.hl7.elm.r1.Date date = (org.hl7.elm.r1.Date) value;
return new DateType(toDateString(toFhirValue(context, date.getYear()), toFhirValue(context, date.getMonth()), toFhirValue(context, date.getDay())));
} else if (value instanceof Start) {
DataType operand = toFhirValue(context, ((Start) value).getOperand());
if (operand != null) {
Period period = (Period) operand;
return period.getStartElement();
}
} else if (value instanceof End) {
DataType operand = toFhirValue(context, ((End) value).getOperand());
if (operand != null) {
Period period = (Period) operand;
return period.getEndElement();
}
} else if (value instanceof ParameterRef) {
if (context.getTypeResolver().isIntervalType(value.getResultType())) {
Extension e = toExpression(context, (ParameterRef) value);
org.hl7.cql.model.DataType pointType = ((IntervalType) value.getResultType()).getPointType();
if (context.getTypeResolver().isDateTimeType(pointType) || context.getTypeResolver().isDateType(pointType)) {
Period period = new Period();
period.addExtension(e);
return period;
} else if (context.getTypeResolver().isQuantityType(pointType) || context.getTypeResolver().isIntegerType(pointType) || context.getTypeResolver().isDecimalType(pointType)) {
Range range = new Range();
range.addExtension(e);
return range;
} else {
throw new IllegalArgumentException(String.format("toFhirValue not implemented for interval of %s", pointType.toString()));
}
} else // Boolean, Integer, Decimal, String, Quantity, Date, DateTime, Time, Coding, CodeableConcept
if (context.getTypeResolver().isBooleanType(value.getResultType())) {
BooleanType result = new BooleanType();
result.addExtension(toExpression(context, (ParameterRef) value));
return result;
} else if (context.getTypeResolver().isIntegerType(value.getResultType())) {
IntegerType result = new IntegerType();
result.addExtension(toExpression(context, (ParameterRef) value));
return result;
} else if (context.getTypeResolver().isDecimalType(value.getResultType())) {
DecimalType result = new DecimalType();
result.addExtension(toExpression(context, (ParameterRef) value));
return result;
} else if (context.getTypeResolver().isQuantityType(value.getResultType())) {
Quantity result = new Quantity();
result.addExtension(toExpression(context, (ParameterRef) value));
return result;
} else if (context.getTypeResolver().isCodeType(value.getResultType())) {
Coding result = new Coding();
result.addExtension(toExpression(context, (ParameterRef) value));
return result;
} else if (context.getTypeResolver().isConceptType(value.getResultType())) {
CodeableConcept result = new CodeableConcept();
result.addExtension(toExpression(context, (ParameterRef) value));
return result;
} else if (context.getTypeResolver().isDateType(value.getResultType())) {
DateType result = new DateType();
result.addExtension(toExpression(context, (ParameterRef) value));
return result;
} else if (context.getTypeResolver().isDateTimeType(value.getResultType())) {
DateTimeType result = new DateTimeType();
result.addExtension(toExpression(context, (ParameterRef) value));
return result;
} else if (context.getTypeResolver().isTimeType(value.getResultType())) {
TimeType result = new TimeType();
result.addExtension(toExpression(context, (ParameterRef) value));
return result;
} else {
throw new IllegalArgumentException(String.format("toFhirValue not implemented for parameter of type %s", value.getResultType().toString()));
}
}
throw new IllegalArgumentException(String.format("toFhirValue not implemented for %s", value.getClass().getSimpleName()));
}
use of org.hl7.fhir.r4b.model.DataType in project clinical_quality_language by cqframework.
the class BaseTest method testFHIRHelpers.
@Test
public void testFHIRHelpers() throws IOException {
CqlTranslator translator = TestUtils.runSemanticTest("fhir/r401/TestFHIRHelpers.cql", 0);
CompiledLibrary translatedLibrary = translator.getTranslatedLibrary();
assertResultType(translatedLibrary, "TestExtensions", "FHIR", "Extension");
assertResultType(translatedLibrary, "TestElementExtensions", "FHIR", "Extension");
assertResultType(translatedLibrary, "TestModifierExtensions", "FHIR", "Extension");
assertResultType(translatedLibrary, "TestElementModifierExtensions", "FHIR", "Extension");
ExpressionDef ed = translatedLibrary.resolveExpressionRef("TestChoiceConverts");
DataType resultType = ed.getExpression().getResultType();
assertThat(resultType, instanceOf(ChoiceType.class));
assertThat(resultType.toString(), equalTo("choice<System.String,System.Boolean,System.Date,System.DateTime,System.Decimal,System.Integer,System.Time,System.Quantity,System.Concept,System.Code,interval<System.Quantity>,interval<System.DateTime>,System.Ratio,FHIR.Address,FHIR.Annotation,FHIR.Attachment,FHIR.ContactPoint,FHIR.HumanName,FHIR.Identifier,FHIR.Money,FHIR.Reference,FHIR.SampledData,FHIR.Signature,FHIR.Timing,FHIR.ContactDetail,FHIR.Contributor,FHIR.DataRequirement,FHIR.Expression,FHIR.ParameterDefinition,FHIR.RelatedArtifact,FHIR.TriggerDefinition,FHIR.UsageContext,FHIR.Dosage,FHIR.Meta>"));
}
use of org.hl7.fhir.r4b.model.DataType in project clinical_quality_language by cqframework.
the class BaseTest method assertResultType.
private void assertResultType(CompiledLibrary translatedLibrary, String expressionName, String namespace, String name) {
ExpressionDef ed = translatedLibrary.resolveExpressionRef(expressionName);
DataType resultType = ed.getExpression().getResultType();
assertThat(resultType, instanceOf(ClassType.class));
ClassType resultClassType = (ClassType) resultType;
assertThat(resultClassType.getNamespace(), equalTo(namespace));
assertThat(resultClassType.getSimpleName(), equalTo(name));
}
use of org.hl7.fhir.r4b.model.DataType in project clinical_quality_language by cqframework.
the class SemanticTests method testTypeOperators.
@Test
public void testTypeOperators() throws IOException {
CqlTranslator translator = runSemanticTest("OperatorTests/TypeOperators.cql");
org.hl7.elm.r1.Library library = translator.toELM();
Map<String, ExpressionDef> defs = new HashMap<>();
if (library.getStatements() != null) {
for (ExpressionDef def : library.getStatements().getDef()) {
defs.put(def.getName(), def);
}
}
ExpressionDef def = defs.get("TestIf");
assertThat(def.getResultType(), instanceOf(ChoiceType.class));
ChoiceType choiceType = (ChoiceType) def.getResultType();
DataType type = null;
for (DataType dt : choiceType.getTypes()) {
if (type == null) {
type = dt;
assertThat(dt, instanceOf(NamedType.class));
assertThat(((NamedType) dt).getName(), equalTo("System.String"));
} else {
assertThat(dt, instanceOf(NamedType.class));
assertThat(((NamedType) dt).getName(), equalTo("System.Boolean"));
}
}
def = defs.get("TestCase");
assertThat(def.getResultType(), instanceOf(ChoiceType.class));
choiceType = (ChoiceType) def.getResultType();
type = null;
for (DataType dt : choiceType.getTypes()) {
if (type == null) {
type = dt;
assertThat(dt, instanceOf(NamedType.class));
assertThat(((NamedType) dt).getName(), equalTo("System.String"));
} else {
assertThat(dt, instanceOf(NamedType.class));
assertThat(((NamedType) dt).getName(), equalTo("System.Boolean"));
}
}
}
use of org.hl7.fhir.r4b.model.DataType in project clinical_quality_language by cqframework.
the class Cql2ElmVisitor method visitRetrieve.
@Override
@SuppressWarnings("unchecked")
public Retrieve visitRetrieve(cqlParser.RetrieveContext ctx) {
libraryBuilder.checkLiteralContext();
List<String> qualifiers = parseQualifiers(ctx.namedTypeSpecifier());
String model = getModelIdentifier(qualifiers);
String label = getTypeIdentifier(qualifiers, parseString(ctx.namedTypeSpecifier().referentialOrTypeNameIdentifier()));
DataType dataType = libraryBuilder.resolveTypeName(model, label);
if (dataType == null) {
// ERROR:
throw new IllegalArgumentException(String.format("Could not resolve type name %s.", label));
}
if (!(dataType instanceof ClassType) || !((ClassType) dataType).isRetrievable()) {
// ERROR:
throw new IllegalArgumentException(String.format("Specified data type %s does not support retrieval.", label));
}
ClassType classType = (ClassType) dataType;
// BTR -> The original intent of this code was to have the retrieve return the base type, and use the "templateId"
// element of the retrieve to communicate the "positive" or "negative" profile to the data access layer.
// However, because this notion of carrying the "profile" through a type is not general, it causes inconsistencies
// when using retrieve results with functions defined in terms of the same type (see GitHub Issue #131).
// Based on the discussion there, the retrieve will now return the declared type, whether it is a profile or not.
// ProfileType profileType = dataType instanceof ProfileType ? (ProfileType)dataType : null;
// NamedType namedType = profileType == null ? classType : (NamedType)classType.getBaseType();
NamedType namedType = classType;
ModelInfo modelInfo = libraryBuilder.getModel(namedType.getNamespace()).getModelInfo();
boolean useStrictRetrieveTyping = modelInfo.isStrictRetrieveTyping() != null && modelInfo.isStrictRetrieveTyping();
Retrieve retrieve = of.createRetrieve().withDataType(libraryBuilder.dataTypeToQName((DataType) namedType)).withTemplateId(classType.getIdentifier());
if (ctx.contextIdentifier() != null) {
List<String> identifiers = (List<String>) visit(ctx.contextIdentifier());
Expression contextExpression = resolveQualifiedIdentifier(identifiers);
retrieve.setContext(contextExpression);
}
if (ctx.terminology() != null) {
if (ctx.codePath() != null) {
String identifiers = (String) visit(ctx.codePath());
retrieve.setCodeProperty(identifiers);
} else if (classType.getPrimaryCodePath() != null) {
retrieve.setCodeProperty(classType.getPrimaryCodePath());
}
Property property = null;
CqlCompilerException propertyException = null;
if (retrieve.getCodeProperty() == null) {
// ERROR:
// WARNING:
propertyException = new CqlSemanticException("Retrieve has a terminology target but does not specify a code path and the type of the retrieve does not have a primary code path defined.", useStrictRetrieveTyping ? CqlCompilerException.ErrorSeverity.Error : CqlCompilerException.ErrorSeverity.Warning, getTrackBack(ctx));
libraryBuilder.recordParsingException(propertyException);
} else {
try {
DataType codeType = libraryBuilder.resolvePath((DataType) namedType, retrieve.getCodeProperty());
property = of.createProperty().withPath(retrieve.getCodeProperty());
property.setResultType(codeType);
} catch (Exception e) {
// ERROR:
// WARNING:
propertyException = new CqlSemanticException(String.format("Could not resolve code path %s for the type of the retrieve %s.", retrieve.getCodeProperty(), namedType.getName()), useStrictRetrieveTyping ? CqlCompilerException.ErrorSeverity.Error : CqlCompilerException.ErrorSeverity.Warning, getTrackBack(ctx), e);
libraryBuilder.recordParsingException(propertyException);
}
}
Expression terminology = null;
if (ctx.terminology().qualifiedIdentifierExpression() != null) {
List<String> identifiers = (List<String>) visit(ctx.terminology());
terminology = resolveQualifiedIdentifier(identifiers);
track(terminology, ctx.terminology().qualifiedIdentifierExpression());
} else {
terminology = parseExpression(ctx.terminology().expression());
}
String codeComparator = ctx.codeComparator() != null ? (String) visit(ctx.codeComparator()) : null;
// Resolve the terminology target using an in or ~ operator
try {
if (codeComparator == null) {
codeComparator = (terminology.getResultType() instanceof ListType || (libraryBuilder.isCompatibleWith("1.5") && terminology.getResultType().isSubTypeOf(libraryBuilder.resolveTypeName("System", "Vocabulary")))) ? "in" : "~";
}
if (property == null) {
throw propertyException;
}
switch(codeComparator) {
case "in":
{
Expression in = libraryBuilder.resolveIn(property, terminology);
if (in instanceof In) {
retrieve.setCodes(((In) in).getOperand().get(1));
} else if (in instanceof InValueSet) {
retrieve.setCodes(((InValueSet) in).getValueset());
} else if (in instanceof InCodeSystem) {
retrieve.setCodes(((InCodeSystem) in).getCodesystem());
} else if (in instanceof AnyInValueSet) {
retrieve.setCodes(((AnyInValueSet) in).getValueset());
} else if (in instanceof AnyInCodeSystem) {
retrieve.setCodes(((AnyInCodeSystem) in).getCodesystem());
} else {
// ERROR:
// WARNING:
libraryBuilder.recordParsingException(new CqlSemanticException(String.format("Unexpected membership operator %s in retrieve", in.getClass().getSimpleName()), useStrictRetrieveTyping ? CqlCompilerException.ErrorSeverity.Error : CqlCompilerException.ErrorSeverity.Warning, getTrackBack(ctx)));
}
}
break;
case "~":
{
// Resolve with equivalent to verify the type of the target
BinaryExpression equivalent = of.createEquivalent().withOperand(property, terminology);
libraryBuilder.resolveBinaryCall("System", "Equivalent", equivalent);
// Automatically promote to a list for use in the retrieve target
if (!(equivalent.getOperand().get(1).getResultType() instanceof ListType)) {
retrieve.setCodes(libraryBuilder.resolveToList(equivalent.getOperand().get(1)));
} else {
retrieve.setCodes(equivalent.getOperand().get(1));
}
}
break;
case "=":
{
// Resolve with equality to verify the type of the source and target
BinaryExpression equal = of.createEqual().withOperand(property, terminology);
libraryBuilder.resolveBinaryCall("System", "Equal", equal);
// Automatically promote to a list for use in the retrieve target
if (!(equal.getOperand().get(1).getResultType() instanceof ListType)) {
retrieve.setCodes(libraryBuilder.resolveToList(equal.getOperand().get(1)));
} else {
retrieve.setCodes(equal.getOperand().get(1));
}
}
break;
default:
// ERROR:
// WARNING:
libraryBuilder.recordParsingException(new CqlSemanticException(String.format("Unknown code comparator % in retrieve", codeComparator), useStrictRetrieveTyping ? CqlCompilerException.ErrorSeverity.Error : CqlCompilerException.ErrorSeverity.Warning, getTrackBack(ctx.codeComparator())));
}
retrieve.setCodeComparator(codeComparator);
// In that case, convert to a list of code (Union the Code elements of the Concepts in the list)
if (retrieve.getCodes() != null && retrieve.getCodes().getResultType() != null && retrieve.getCodes().getResultType() instanceof ListType && ((ListType) retrieve.getCodes().getResultType()).getElementType().equals(libraryBuilder.resolveTypeName("System", "Concept"))) {
if (retrieve.getCodes() instanceof ToList) {
// ToList will always have a single argument
ToList toList = (ToList) retrieve.getCodes();
// If that argument is a ToConcept, replace the ToList argument with the code (skip the implicit conversion, the data access layer is responsible for it)
if (toList.getOperand() instanceof ToConcept) {
toList.setOperand(((ToConcept) toList.getOperand()).getOperand());
} else {
// Otherwise, access the codes property of the resulting Concept
Expression codesAccessor = libraryBuilder.buildProperty(toList.getOperand(), "codes", false, toList.getOperand().getResultType());
retrieve.setCodes(codesAccessor);
}
} else {
// WARNING:
libraryBuilder.recordParsingException(new CqlSemanticException("Terminology target is a list of concepts, but expects a list of codes", CqlCompilerException.ErrorSeverity.Warning, getTrackBack(ctx)));
}
}
} catch (Exception e) {
// it shouldn't prevent translation unless the modelinfo indicates strict retrieve typing
if ((libraryBuilder.isCompatibleWith("1.5") && !(terminology.getResultType().isSubTypeOf(libraryBuilder.resolveTypeName("System", "Vocabulary")))) || (!libraryBuilder.isCompatibleWith("1.5") && !(terminology.getResultType() instanceof ListType))) {
retrieve.setCodes(libraryBuilder.resolveToList(terminology));
} else {
retrieve.setCodes(terminology);
}
retrieve.setCodeComparator(codeComparator);
// ERROR:
// WARNING:
libraryBuilder.recordParsingException(new CqlSemanticException("Could not resolve membership operator for terminology target of the retrieve.", useStrictRetrieveTyping ? CqlCompilerException.ErrorSeverity.Error : CqlCompilerException.ErrorSeverity.Warning, getTrackBack(ctx), e));
}
}
retrieves.add(retrieve);
retrieve.setResultType(new ListType((DataType) namedType));
return retrieve;
}
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