use of org.hl7.fhir.r4b.model.DateTimeType in project eCRNow by drajer-health.
the class CdaFhirUtilities method getXmlForTypeForValueIvlTsEffectiveTime.
public static String getXmlForTypeForValueIvlTsEffectiveTime(String elName, Type dt) {
String val = "";
if (dt != null) {
if (dt instanceof DateTimeType) {
DateTimeType d = (DateTimeType) dt;
val += CdaGeneratorUtils.getXmlForEffectiveTime(elName, d.getValue(), d.getTimeZone());
} else if (dt instanceof Period) {
Period pt = (Period) dt;
val += getPeriodXml(pt, elName);
} else if (dt instanceof Timing) {
Timing t = (Timing) (dt);
if (t.getRepeat() != null && t.getRepeat().getBounds() != null) {
logger.debug("Found the bounds element for creating xml");
}
}
logger.debug("Printing the class name {}", dt.getClass());
return val;
}
return val;
}
use of org.hl7.fhir.r4b.model.DateTimeType in project eCRNow by drajer-health.
the class CdaFhirUtilities method getActualDate.
public static Pair<Date, TimeZone> getActualDate(Type dt) {
Date d = null;
TimeZone t = null;
if (dt instanceof DateTimeType) {
DateTimeType d1 = (DateTimeType) dt;
d = d1.getValue();
t = d1.getTimeZone();
} else if (dt instanceof Period) {
logger.debug("Found an instance of period");
Period d1 = (Period) dt;
if (d1.getStartElement() != null) {
d = d1.getStart();
t = d1.getStartElement().getTimeZone();
} else if (d1.getEndElement() != null) {
d = d1.getEnd();
t = d1.getEndElement().getTimeZone();
}
} else if (dt instanceof InstantType) {
InstantType d1 = (InstantType) dt;
d = d1.getValue();
t = d1.getTimeZone();
} else if (dt instanceof Timing) {
logger.debug(" Found an instance of timing ");
Timing tmg = (Timing) (dt);
if (tmg.getRepeat() != null && tmg.getRepeat().getBounds() != null) {
logger.debug(" Found the bounds element ");
return getActualDate(tmg.getRepeat().getBounds());
}
}
return new Pair<>(d, t);
}
use of org.hl7.fhir.r4b.model.DateTimeType in project eCRNow by drajer-health.
the class CdaFhirUtilities method getXmlForType.
public static String getXmlForType(Type dt, String elName, Boolean valFlag) {
String val = "";
if (dt != null) {
if (dt instanceof Coding) {
Coding cd = (Coding) dt;
List<Coding> cds = new ArrayList<>();
cds.add(cd);
if (!valFlag)
val += getCodingXml(cds, elName, "");
else
val += getCodingXmlForValue(cds, elName);
} else if (dt instanceof CodeableConcept) {
CodeableConcept cd = (CodeableConcept) dt;
List<Coding> cds = cd.getCoding();
if (!valFlag)
val += getCodingXml(cds, elName, "");
else
val += getCodingXmlForValue(cds, elName);
} else if (dt instanceof Quantity) {
Quantity qt = (Quantity) dt;
val += getQuantityXml(qt, elName, valFlag);
} else if (dt instanceof DateTimeType) {
DateTimeType d = (DateTimeType) dt;
val += CdaGeneratorUtils.getXmlForEffectiveTime(elName, d.getValue(), d.getTimeZone());
} else if (dt instanceof Period) {
Period pt = (Period) dt;
val += getPeriodXml(pt, elName);
} else if (dt instanceof Timing) {
Timing t = (Timing) (dt);
if (t.getRepeat() != null && t.getRepeat().getBounds() != null) {
logger.debug("Found the bounds element for creating xml");
String v = getXmlForType(t.getRepeat().getBounds(), elName, valFlag);
val += v;
}
} else if (dt instanceof CodeType) {
CodeType cd = (CodeType) dt;
if (!valFlag)
val += CdaGeneratorUtils.getXmlForCD(elName, cd.getCode());
else
val += CdaGeneratorUtils.getXmlForValueString(cd.getCode());
} else if (dt instanceof StringType) {
StringType st = (StringType) dt;
if (!valFlag)
val += CdaGeneratorUtils.getXmlForText(elName, st.getValue());
else
val += CdaGeneratorUtils.getXmlForValueString(st.getValue());
}
logger.debug("Printing the class name {}", dt.getClass());
return val;
}
if (!valFlag)
val += CdaGeneratorUtils.getNFXMLForElement(elName, CdaGeneratorConstants.NF_NI);
else
val += CdaGeneratorUtils.getNFXmlForValueString(CdaGeneratorConstants.NF_NI);
return val;
}
use of org.hl7.fhir.r4b.model.DateTimeType in project eCRNow by drajer-health.
the class CdaHeaderGenerator method getPatientDetails.
public static String getPatientDetails(Patient p, LaunchDetails details) {
StringBuilder patientDetails = new StringBuilder();
patientDetails.append(CdaGeneratorUtils.getXmlForStartElement(CdaGeneratorConstants.RECORD_TARGET_EL_NAME));
patientDetails.append(CdaGeneratorUtils.getXmlForStartElement(CdaGeneratorConstants.PATIENT_ROLE_EL_NAME));
List<Identifier> ids = CdaFhirUtilities.getIdentifierForType(p.getIdentifier(), CdaFhirEnumConstants.FHIR_ID_TYPE_MR);
Boolean addOnce = true;
if (ids != null && !ids.isEmpty()) {
for (Identifier id : ids) {
if (!StringUtils.isEmpty(id.getSystem()) && !StringUtils.isEmpty(id.getValue())) {
logger.debug("Found Identifier with Type MR");
String system = CdaGeneratorUtils.getRootOid(id.getSystem(), details.getAssigningAuthorityId());
patientDetails.append(CdaGeneratorUtils.getXmlForII(system, id.getValue()));
} else {
logger.debug("Using Resource Identifier as id");
if (addOnce) {
patientDetails.append(CdaGeneratorUtils.getXmlForII(details.getAssigningAuthorityId(), p.getId()));
addOnce = false;
}
}
}
} else {
logger.debug("Using Resource Identifier as id");
patientDetails.append(CdaGeneratorUtils.getXmlForII(details.getAssigningAuthorityId(), p.getId()));
}
// Add Address.
patientDetails.append(CdaFhirUtilities.getAddressXml(p.getAddress()));
// Add Telecom (Phone)
patientDetails.append(CdaFhirUtilities.getTelecomXml(p.getTelecom(), false));
// Add Telecom (Email)
patientDetails.append(CdaFhirUtilities.getEmailXml(p.getTelecom()));
// Add patient
patientDetails.append(CdaGeneratorUtils.getXmlForStartElement(CdaGeneratorConstants.PATIENT_EL_NAME));
patientDetails.append(CdaGeneratorUtils.getXmlForStartElement(CdaGeneratorConstants.NAME_EL_NAME));
patientDetails.append(CdaFhirUtilities.getNameXml(p.getName()));
patientDetails.append(CdaGeneratorUtils.getXmlForEndElement(CdaGeneratorConstants.NAME_EL_NAME));
patientDetails.append(CdaFhirUtilities.getGenderXml(p.getGenderElement().getValue()));
patientDetails.append(CdaFhirUtilities.getDateTypeXml(p.getBirthDateElement(), CdaGeneratorConstants.BIRTH_TIME_EL_NAME));
if (p.getDeceased() == null || (p.getDeceased() != null && p.getDeceased().isEmpty())) {
patientDetails.append(CdaGeneratorUtils.getXmlForValue(CdaGeneratorConstants.SDTC_DECEASED_IND, CdaGeneratorConstants.CCDA_FALSE));
} else {
patientDetails.append(CdaGeneratorUtils.getXmlForValue(CdaGeneratorConstants.SDTC_DECEASED_IND, CdaGeneratorConstants.CCDA_TRUE));
if (p.getDeceased() instanceof DateTimeType) {
DateTimeType d = (DateTimeType) p.getDeceased();
patientDetails.append(CdaFhirUtilities.getDateTimeTypeXml(d, CdaGeneratorConstants.SDTC_DECEASED_TIME));
} else {
patientDetails.append(CdaGeneratorUtils.getXmlForNullEffectiveTime(CdaGeneratorConstants.SDTC_DECEASED_TIME, CdaGeneratorConstants.NF_NI));
}
}
Coding race = CdaFhirUtilities.getCodingExtension(p.getExtension(), CdaGeneratorConstants.FHIR_USCORE_RACE_EXT_URL, CdaGeneratorConstants.OMB_RACE_CATEGORY_URL);
if (race != null && race.getCode() != null) {
patientDetails.append(CdaGeneratorUtils.getXmlForCD(CdaGeneratorConstants.RACE_CODE_EL_NAME, race.getCode(), CdaGeneratorConstants.RACE_CODE_SYSTEM, CdaGeneratorConstants.RACE_CODE_SYSTEM_NAME, race.getDisplay()));
} else {
patientDetails.append(CdaGeneratorUtils.getXmlForNullCD(CdaGeneratorConstants.RACE_CODE_EL_NAME, CdaGeneratorConstants.NF_NI));
}
Coding ethnicity = CdaFhirUtilities.getCodingExtension(p.getExtension(), CdaGeneratorConstants.FHIR_USCORE_ETHNICITY_EXT_URL, CdaGeneratorConstants.OMB_RACE_CATEGORY_URL);
if (ethnicity != null && ethnicity.getCode() != null) {
patientDetails.append(CdaGeneratorUtils.getXmlForCD(CdaGeneratorConstants.ETHNIC_CODE_EL_NAME, ethnicity.getCode(), CdaGeneratorConstants.RACE_CODE_SYSTEM, CdaGeneratorConstants.RACE_CODE_SYSTEM_NAME, ethnicity.getDisplay()));
} else {
patientDetails.append(CdaGeneratorUtils.getXmlForNullCD(CdaGeneratorConstants.ETHNIC_CODE_EL_NAME, CdaGeneratorConstants.NF_NI));
}
// Adding Guardian
if (p.getContact() != null && !p.getContact().isEmpty()) {
ContactComponent guardianContact = CdaFhirUtilities.getGuardianContact(p.getContact());
if (guardianContact != null) {
patientDetails.append(CdaGeneratorUtils.getXmlForStartElement(CdaGeneratorConstants.GUARDIAN_EL_NAME));
// Add address if found
if (guardianContact.getAddress() != null) {
logger.debug("Adding Address for Guardian");
List<Address> addrs = new ArrayList<>();
addrs.add(guardianContact.getAddress());
patientDetails.append(CdaFhirUtilities.getAddressXml(addrs));
}
// Add Telecom
patientDetails.append(CdaFhirUtilities.getTelecomXml(guardianContact.getTelecom(), false));
patientDetails.append(CdaFhirUtilities.getEmailXml(guardianContact.getTelecom()));
patientDetails.append(CdaGeneratorUtils.getXmlForStartElement(CdaGeneratorConstants.GUARDIAN_PERSON_EL_NAME));
patientDetails.append(CdaGeneratorUtils.getXmlForStartElement(CdaGeneratorConstants.NAME_EL_NAME));
List<HumanName> names = new ArrayList<>();
names.add(guardianContact.getName());
patientDetails.append(CdaFhirUtilities.getNameXml(names));
patientDetails.append(CdaGeneratorUtils.getXmlForEndElement(CdaGeneratorConstants.NAME_EL_NAME));
patientDetails.append(CdaGeneratorUtils.getXmlForEndElement(CdaGeneratorConstants.GUARDIAN_PERSON_EL_NAME));
patientDetails.append(CdaGeneratorUtils.getXmlForEndElement(CdaGeneratorConstants.GUARDIAN_EL_NAME));
}
}
patientDetails.append(CdaGeneratorUtils.getXmlForStartElement(CdaGeneratorConstants.LANGUAGE_COMM_EL_NAME));
Coding language = CdaFhirUtilities.getLanguageForCodeSystem(p.getCommunication(), CdaGeneratorConstants.FHIR_LANGUAGE_CODESYSTEM_URL);
if (language != null && language.getCode() != null) {
patientDetails.append(CdaGeneratorUtils.getXmlForCD(CdaGeneratorConstants.LANGUAGE_CODE_EL_NAME, language.getCode()));
} else {
patientDetails.append(CdaGeneratorUtils.getXmlForNullCD(CdaGeneratorConstants.LANGUAGE_CODE_EL_NAME, CdaGeneratorConstants.NF_NI));
}
patientDetails.append(CdaGeneratorUtils.getXmlForEndElement(CdaGeneratorConstants.LANGUAGE_COMM_EL_NAME));
patientDetails.append(CdaGeneratorUtils.getXmlForEndElement(CdaGeneratorConstants.PATIENT_EL_NAME));
patientDetails.append(CdaGeneratorUtils.getXmlForEndElement(CdaGeneratorConstants.PATIENT_ROLE_EL_NAME));
patientDetails.append(CdaGeneratorUtils.getXmlForEndElement(CdaGeneratorConstants.RECORD_TARGET_EL_NAME));
return patientDetails.toString();
}
use of org.hl7.fhir.r4b.model.DateTimeType in project nia-patient-switching-standard-adaptor by NHSDigital.
the class MedicationStatementMapperTest method When_MappingPrescribeResourceWithNoOptionals_Expect_AllFieldsToBeMappedCorrectly.
@Test
public void When_MappingPrescribeResourceWithNoOptionals_Expect_AllFieldsToBeMappedCorrectly() {
var ehrExtract = unmarshallEhrExtract("ehrExtract3.xml");
var medicationStatement = unmarshallMedicationStatement("medicationStatementAuthoriseAllOptionals_MedicationStatement.xml");
var authorise = medicationStatement.getComponent().stream().filter(RCMRMT030101UK04Component2::hasEhrSupplyAuthorise).map(RCMRMT030101UK04Component2::getEhrSupplyAuthorise).findFirst();
when(medicationMapper.extractMedicationReference(any())).thenReturn(Optional.of(new Reference(new IdType(ResourceType.Medication.name(), MEDICATION_ID))));
assertThat(authorise.isPresent()).isTrue();
var medicationStatement1 = medicationStatementMapper.mapToMedicationStatement(ehrExtract, medicationStatement, authorise.get(), PRACTISE_CODE, new DateTimeType());
var lastIssuedDate = medicationStatement1.getExtensionsByUrl("https://fhir.nhs.uk/STU3/StructureDefinition/Extension-CareConnect-GPC-MedicationStatementLastIssueDate-1");
assertThat(lastIssuedDate.size()).isEqualTo(1);
var dateTime = (DateTimeType) lastIssuedDate.get(0).getValue();
assertThat(dateTime.getValue()).isEqualTo(DateFormatUtil.parseToDateTimeType("20060428").getValue());
var prescribingAgency = medicationStatement1.getExtensionsByUrl("https://fhir.nhs.uk/STU3/StructureDefinition/Extension-CareConnect-GPC-PrescribingAgency-1");
assertThat(prescribingAgency.size()).isEqualTo(1);
assertThat(medicationStatement1.getBasedOnFirstRep().getReferenceElement().getIdPart()).isEqualTo(TEST_ID);
assertThat(medicationStatement1.getStatus()).isEqualTo(ACTIVE);
assertThat(medicationStatement1.getMedicationReference().getReferenceElement().getIdPart()).isEqualTo(MEDICATION_ID);
assertThat(medicationStatement1.getTaken()).isEqualTo(UNK);
assertThat(medicationStatement1.getDosageFirstRep().getText()).isEqualTo(TAKE_ONE_DAILY);
}
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