Examples with DateTimeType org.hl7.fhir.r4b.model.DateTimeType used on opensource projects

Example 86 with DateTimeType

use of org.hl7.fhir.r4b.model.DateTimeType in project hl7v2-fhir-converter by LinuxForHealth.

the class Hl7ImmunizationFHIRConversionTest method testImmunizationRXA20Priority.

// Suppress warnings about too many assertions in a test.  Justification: creating a FHIR message is very costly; we need to check many asserts per creation for efficiency.
@java.lang.SuppressWarnings("squid:S5961")
@Test
void testImmunizationRXA20Priority() throws IOException {
    // RXA.20 is "completed" this takes precedence over rxa.18 having a value and orc.5
    // ORC.5 is here to prove RXA.20 is taking precedence
    // ORC.9 is here to prove RXA.22 is taking precedence
    String hl7VUXmessageRep = "MSH|^~\\&|EHR|12345^SiteName|MIIS|99990|20140701041038||VXU^V04^VXU_V04|MSG.Valid_01|P|2.6|||\n" + "PID|||1234^^^^MR||DOE^JANE^|||F||||||||||||||||||||||\r" + "ORC|RE||197027||ER||||20130905041038|||MD67895^Pediatric^MARY^^^^MD^^RIA|||||\r" + // RXA.11 to Performer Organization
    "RXA|||20130531||48^HIB PRP-T^CVX|0.5|ML^^ISO+||00^new immunization record^NIP001|^Sticker^Nurse|^^^RI2050||||33k2a|20131210|PMC^sanofi^MVX|00^Patient refusal^NIP002||PA|A|20120901041038\r" + "OBX|1|CWE|31044-1^Reaction^LN|1|VXC9^Persistent, inconsolable crying lasting > 3 hours within 48 hours of dose^CDCPHINVS||||||F|||20130531|||VXC40^per imm^CDCPHINVS\r";
    List<Bundle.BundleEntryComponent> e = ResourceUtils.createFHIRBundleFromHL7MessageReturnEntryList(ftv, hl7VUXmessageRep);
    List<Resource> immu = ResourceUtils.getResourceList(e, ResourceType.Immunization);
    assertThat(immu).hasSize(1);
    Immunization resource = ResourceUtils.getResourceImmunization(immu.get(0), ResourceUtils.context);
    assertThat(resource).isNotNull();
    // RXA.20 is "completed" this takes precedence over rxa.18 having a value and orc.5
    assertThat(resource.getStatus().getDisplay()).isEqualTo("completed");
    assertThat(resource.hasStatusReason()).isTrue();
    // RXA.18
    assertThat(resource.getStatusReason().getCodingFirstRep().getCode()).isEqualTo("00");
    // RXA.18
    assertThat(resource.getStatusReason().getCodingFirstRep().getSystem()).isEqualTo("urn:id:NIP002");
    // RXA.18
    assertThat(resource.getStatusReason().getCodingFirstRep().getDisplay()).isEqualTo("Patient refusal");
    assertThat(resource.getStatusReason().getText()).isEqualTo("Patient refusal");
    assertThat(resource.getIsSubpotent()).isTrue();
    // RXA.5.1 + 5.3
    assertThat(resource.getIdentifier().get(0).getValue()).isEqualTo("48-CVX");
    assertThat(resource.getIdentifier().get(0).getSystem()).isEqualTo("urn:id:extID");
    assertThat(resource.getVaccineCode().getCoding().get(0).getSystem()).isEqualTo(// RXA.5.3
    "http://hl7.org/fhir/sid/cvx");
    // RXA.5.1
    assertThat(resource.getVaccineCode().getCoding().get(0).getCode()).isEqualTo("48");
    // RXA.5.2
    assertThat(resource.getVaccineCode().getText()).isEqualTo("HIB PRP-T");
    // RXA.3
    assertThat(resource.getOccurrence()).hasToString("DateTimeType[2013-05-31]");
    // RXA.9.3
    assertThat(resource.getReportOrigin().getCoding().get(0).getSystem()).isEqualTo("urn:id:NIP001");
    // RXA.9.
    assertThat(resource.getReportOrigin().getCoding().get(0).getCode()).isEqualTo("00");
    // RXA.9.2
    assertThat(resource.getReportOrigin().getCoding().get(0).getDisplay()).isEqualTo("new immunization record");
    // RXA.9.2
    assertThat(resource.getReportOrigin().getText()).isEqualTo("new immunization record");
    // RXA.17
    assertThat(resource.getManufacturer().isEmpty()).isFalse();
    // RXA.22
    assertThat(resource.hasRecorded()).isTrue();
    // RXA.22
    assertThat(resource.getRecordedElement().toString()).contains("2012-09-01");
    String manufacturerRef = resource.getManufacturer().getReference();
    // RXA.15
    assertThat(resource.getLotNumber()).isEqualTo("33k2a");
    // RXA.16
    assertThat(resource.getExpirationDate()).isEqualTo("2013-12-10");
    // dose Quantity with an unknown system
    assertThat(resource.hasDoseQuantity()).isTrue();
    assertThat(resource.getDoseQuantity().getValue()).hasToString("0.5");
    assertThat(resource.getDoseQuantity().getUnit()).isEqualTo("ML");
    assertThat(resource.getDoseQuantity().getCode()).isEqualTo("ML");
    assertThat(resource.getDoseQuantity().getSystem()).isEqualTo("urn:id:ISO+");
    String requesterRef1 = resource.getPerformer().get(0).getActor().getReference();
    Practitioner practBundle1 = ResourceUtils.getSpecificPractitionerFromBundleEntriesList(e, requesterRef1);
    assertThat(resource.getPerformer()).hasSize(3);
    DatatypeUtils.checkCommonCodingAssertions(resource.getPerformer().get(0).getFunction().getCoding().get(0), "OP", "Ordering Provider", "http://terminology.hl7.org/CodeSystem/v2-0443", // ORC.12
    null);
    assertThat(resource.getPerformer().get(0).getFunction().hasText()).isFalse();
    // ORC.12
    assertThat(resource.getPerformer().get(0).getActor().getReference()).isNotEmpty();
    assertThat(practBundle1.getNameFirstRep().getText()).isEqualTo("MARY Pediatric");
    assertThat(practBundle1.getNameFirstRep().getFamily()).isEqualTo("Pediatric");
    assertThat(practBundle1.getNameFirstRep().getGiven().get(0)).hasToString("MARY");
    assertThat(practBundle1.getIdentifierFirstRep().getValue()).isEqualTo("MD67895");
    String requesterRef2 = resource.getPerformer().get(1).getActor().getReference();
    Practitioner practBundle2 = ResourceUtils.getSpecificPractitionerFromBundleEntriesList(e, requesterRef2);
    DatatypeUtils.checkCommonCodingAssertions(resource.getPerformer().get(1).getFunction().getCoding().get(0), "AP", "Administering Provider", "http://terminology.hl7.org/CodeSystem/v2-0443", // RXA.10
    null);
    assertThat(resource.getPerformer().get(1).getFunction().hasText()).isFalse();
    // RXA.10
    assertThat(resource.getPerformer().get(1).getActor().isEmpty()).isFalse();
    assertThat(practBundle2.getNameFirstRep().getText()).isEqualTo("Nurse Sticker");
    assertThat(practBundle2.getNameFirstRep().getFamily()).isEqualTo("Sticker");
    assertThat(practBundle2.getNameFirstRep().getGiven().get(0)).hasToString("Nurse");
    String requesterRef3 = resource.getPerformer().get(2).getActor().getReference();
    DatatypeUtils.checkCommonCodingAssertions(resource.getPerformer().get(2).getFunction().getCoding().get(0), "AP", "Administering Provider", "http://terminology.hl7.org/CodeSystem/v2-0443", // RXA.11
    null);
    assertThat(resource.getPerformer().get(1).getFunction().hasText()).isFalse();
    // Immunization.Reaction Date (OBX.14) and Detail (OBX.5 if OBX 3 is 31044-1)
    // OBX.14
    assertThat(resource.getReactionFirstRep().getDateElement().toString()).contains("2013-05-31");
    // OBX.5
    assertThat(resource.getReactionFirstRep().getDetail().hasReference()).isTrue();
    // Looking for one Observation that matches the Reaction.Detail reference
    String reactionDetail = resource.getReactionFirstRep().getDetail().getReference();
    List<Resource> observations = ResourceUtils.getResourceList(e, ResourceType.Observation);
    assertThat(observations).hasSize(1);
    Observation obs = ResourceUtils.getResourceObservation(observations.get(0), ResourceUtils.context);
    assertThat(obs.getId()).isEqualTo(reactionDetail);
    assertThat(obs.getCode().getCodingFirstRep().getDisplay()).isEqualTo("Persistent, inconsolable crying lasting > 3 hours within 48 hours of dose");
    assertThat(obs.getCode().getCodingFirstRep().getCode()).isEqualTo("VXC9");
    assertThat(obs.getCode().getCodingFirstRep().getSystem()).isEqualTo("urn:id:CDCPHINVS");
    assertThat(obs.getCode().getText()).isEqualTo("Persistent, inconsolable crying lasting > 3 hours within 48 hours of dose");
    assertThat(obs.getIdentifierFirstRep().getValue()).isEqualTo("197027-VXC9-CDCPHINVS");
    assertThat(obs.getIdentifierFirstRep().getSystem()).isEqualTo("urn:id:extID");
    // Looking for two Organizations: one for the manufacturer reference and one for the Immunization.performer
    List<Resource> organizations = ResourceUtils.getResourceList(e, ResourceType.Organization);
    assertThat(organizations).hasSize(2);
    Organization org = ResourceUtils.getResourceOrganization(organizations.get(0), ResourceUtils.context);
    assertThat(org.getName()).isEqualTo("RI2050");
    assertThat(org.getId()).isEqualTo(requesterRef3);
    assertThat(org.hasContact()).isFalse();
    org = ResourceUtils.getResourceOrganization(organizations.get(1), ResourceUtils.context);
    assertThat(org.getName()).isEqualTo("sanofi");
    assertThat(org.getId()).isEqualTo(manufacturerRef);
    assertThat(org.hasContact()).isFalse();
    // Test that a ServiceRequest is not created for VXU_V04
    List<Resource> serviceRequestList = ResourceUtils.getResourceList(e, ResourceType.ServiceRequest);
    // Confirm that a serviceRequest was not created.
    assertThat(serviceRequestList).isEmpty();
    // Check for expected resources: Organizations (2), Immunization, Patient, Observation, Practitioner (2)
    assertThat(e).hasSize(7);
}

Example 87 with DateTimeType

use of org.hl7.fhir.r4b.model.DateTimeType in project openmrs-module-fhir2 by openmrs.

the class ConditionTranslatorImpl method toFhirResource.

@Override
public org.hl7.fhir.r4.model.Condition toFhirResource(@Nonnull Obs obsCondition) {
    notNull(obsCondition, "The Openmrs Condition object should not be null");
    org.hl7.fhir.r4.model.Condition fhirCondition = new org.hl7.fhir.r4.model.Condition();
    fhirCondition.setId(obsCondition.getUuid());
    Person obsPerson = obsCondition.getPerson();
    if (obsPerson != null) {
        if (obsPerson instanceof HibernateProxy) {
            obsPerson = HibernateUtil.getRealObjectFromProxy(obsPerson);
        }
        if (obsPerson instanceof Patient) {
            fhirCondition.setSubject(patientReferenceTranslator.toFhirResource((Patient) obsPerson));
        }
    }
    if (obsCondition.getValueCoded() != null) {
        fhirCondition.setCode(conceptTranslator.toFhirResource(obsCondition.getValueCoded()));
    }
    fhirCondition.setOnset(new DateTimeType().setValue(obsCondition.getObsDatetime()));
    fhirCondition.setRecorder(practitionerReferenceTranslator.toFhirResource(obsCondition.getCreator()));
    fhirCondition.setRecordedDate(obsCondition.getDateCreated());
    fhirCondition.getMeta().setLastUpdated(obsCondition.getDateChanged());
    fhirCondition.addContained(provenanceTranslator.getCreateProvenance(obsCondition));
    fhirCondition.addContained(provenanceTranslator.getUpdateProvenance(obsCondition));
    return fhirCondition;
}

Example 88 with DateTimeType

use of org.hl7.fhir.r4b.model.DateTimeType in project openmrs-module-fhir2 by openmrs.

the class FhirImmunizationServiceImplTest method saveImmunization_shouldCreateEncounterAndObsGroupWhenNewImmunization.

@Test
public void saveImmunization_shouldCreateEncounterAndObsGroupWhenNewImmunization() {
    // setup
    FhirContext ctx = FhirContext.forR4();
    IParser parser = ctx.newJsonParser();
    Immunization newImmunization = parser.parseResource(Immunization.class, "{\n" + "  \"resourceType\": \"Immunization\",\n" + "  \"status\": \"completed\",\n" + "  \"vaccineCode\": {\n" + "    \"coding\": [\n" + "      {\n" + "        \"code\": \"15f83cd6-64e9-4e06-a5f9-364d3b14a43d\",\n" + "        \"display\": \"Aspirin as a vaccine\"\n" + "      }\n" + "    ]\n" + "  },\n" + "  \"patient\": {\n" + "    \"reference\": \"Patient/a7e04421-525f-442f-8138-05b619d16def\",\n" + "    \"type\": \"Patient\"\n" + "  },\n" + "  \"encounter\": {\n" + "    \"reference\": \"Encounter/7d8c1980-6b78-11e0-93c3-18a905e044dc\",\n" + "    \"type\": \"Encounter\"\n" + "  },\n" + "  \"occurrenceDateTime\": \"2020-07-08T18:30:00.000Z\",\n" + "  \"manufacturer\": {\n" + "    \"display\": \"Acme\"\n" + "  },\n" + "  \"lotNumber\": \"FOO1234\",\n" + "  \"expirationDate\": \"2022-07-31T18:30:00.000Z\",\n" + "  \"performer\": [\n" + "    {\n" + "      \"actor\": {\n" + "        \"reference\": \"Practitioner/f9badd80-ab76-11e2-9e96-0800200c9a66\",\n" + "        \"type\": \"Practitioner\"\n" + "      }\n" + "    }\n" + "  ],\n" + "  \"protocolApplied\": [\n" + "    {\n" + "      \"doseNumberPositiveInt\": 2,\n" + "      \"series\": \"Dose 2\"\n" + "    }\n" + "  ]\n" + "}");
    // replay
    Immunization savedImmunization = service.create(newImmunization);
    Obs obs = obsService.getObsByUuid(savedImmunization.getId());
    // verify
    helper.validateImmunizationObsGroup(obs);
    assertObsCommons(obs, "a7e04421-525f-442f-8138-05b619d16def", "7d8c1980-6b78-11e0-93c3-18a905e044dc", "f9badd80-ab76-11e2-9e96-0800200c9a66");
    obs.getGroupMembers().forEach(o -> assertObsCommons(o, "a7e04421-525f-442f-8138-05b619d16def", "7d8c1980-6b78-11e0-93c3-18a905e044dc", "f9badd80-ab76-11e2-9e96-0800200c9a66"));
    Map<String, Obs> members = helper.getObsMembersMap(obs);
    assertThat(members.get(CIEL_984).getValueCoded().getUuid(), is("15f83cd6-64e9-4e06-a5f9-364d3b14a43d"));
    assertThat(members.get(CIEL_1410).getValueDatetime(), equalTo(new DateTimeType("2020-07-08T18:30:00.000Z").getValue()));
    assertThat(members.get(CIEL_1418).getValueNumeric(), equalTo(2.0));
    assertThat(members.get(CIEL_1419).getValueText(), is("Acme"));
    assertThat(members.get(CIEL_1420).getValueText(), is("FOO1234"));
    assertThat(members.get(CIEL_165907).getValueDatetime(), equalTo(new DateTimeType("2022-07-31T18:30:00.000Z").getValue()));
}

Example 89 with DateTimeType

use of org.hl7.fhir.r4b.model.DateTimeType in project openmrs-module-fhir2 by openmrs.

the class ObservationTranslatorImplTest method toOpenmrsType_shouldTranslateEffectiveDatetimeToObsDatetime.

@Test
public void toOpenmrsType_shouldTranslateEffectiveDatetimeToObsDatetime() {
    Observation observation = new Observation();
    DateTimeType dateTime = new DateTimeType();
    dateTime.setValue(new Date());
    observation.setEffective(dateTime);
    Obs obs = new Obs();
    Obs expected = new Obs();
    expected.setObsDatetime(new Date());
    observationTranslator.toOpenmrsType(obs, observation);
    assertThat(expected, notNullValue());
    assertThat(expected.getObsDatetime(), notNullValue());
    assertThat(expected.getObsDatetime(), DateMatchers.sameDay(new Date()));
}

Example 90 with DateTimeType

use of org.hl7.fhir.r4b.model.DateTimeType in project openmrs-module-fhir2 by openmrs.

the class ObservationValueTranslatorImplTest method toFhirResource_shouldConvertObsWithDatetimeToDateTimeType.

@Test
public void toFhirResource_shouldConvertObsWithDatetimeToDateTimeType() {
    Date expected = new Date();
    obs.setValueDate(expected);
    Type result = obsValueTranslator.toFhirResource(obs);
    assertThat(result, notNullValue());
    assertThat(result, instanceOf(DateTimeType.class));
    assertThat(((DateTimeType) result).getValue(), equalTo(expected));
}