use of org.hl7.fhir.r4b.model.DomainResource in project org.hl7.fhir.core by hapifhir.
the class NarrativeGenerator method renderBundle.
public XhtmlNode renderBundle(Bundle b) throws FHIRException {
if (b.getType() == BundleType.DOCUMENT) {
if (!b.hasEntry() || !(b.getEntryFirstRep().hasResource() && b.getEntryFirstRep().getResource() instanceof Composition))
throw new FHIRException("Invalid document - first entry is not a Composition");
Composition dr = (Composition) b.getEntryFirstRep().getResource();
return dr.getText().getDiv();
} else {
XhtmlNode root = new XhtmlNode(NodeType.Element, "div");
root.para().addText("Bundle " + b.getId() + " of type " + b.getType().toCode());
int i = 0;
for (BundleEntryComponent be : b.getEntry()) {
root.hr();
root.para().addText("Entry " + Integer.toString(i) + (be.hasFullUrl() ? "Full URL = " + be.getFullUrl() : ""));
if (be.hasRequest())
renderRequest(root, be.getRequest());
if (be.hasSearch())
renderSearch(root, be.getSearch());
if (be.hasResponse())
renderResponse(root, be.getResponse());
if (be.hasResource()) {
root.para().addText("Resource " + be.getResource().fhirType() + ":");
if (be.hasResource() && be.getResource() instanceof DomainResource) {
DomainResource dr = (DomainResource) be.getResource();
if (dr.getText().hasDiv())
root.blockquote().getChildNodes().addAll(dr.getText().getDiv().getChildNodes());
}
}
}
return root;
}
}
use of org.hl7.fhir.r4b.model.DomainResource in project org.hl7.fhir.core by hapifhir.
the class NarrativeGeneratorTests method process.
private void process(String path) throws FileNotFoundException, IOException, XmlPullParserException, EOperationOutcome, FHIRException {
XmlParser p = new XmlParser();
DomainResource r = (DomainResource) p.parse(new FileInputStream(path));
gen.generate(r);
FileOutputStream s = new FileOutputStream(Utilities.path("[tmp]", "gen.xml"));
new XmlParser().compose(s, r, true);
s.close();
}
use of org.hl7.fhir.r4b.model.DomainResource in project org.hl7.fhir.core by hapifhir.
the class NarrativeGenerator method generateDocumentNarrative.
public XhtmlNode generateDocumentNarrative(Bundle feed) {
/*
When the document is presented for human consumption, applications must present the collated narrative portions of the following resources in order:
* The Composition resource
* The Subject resource
* Resources referenced in the section.content
*/
XhtmlNode root = new XhtmlNode(NodeType.Element, "div");
Composition comp = (Composition) feed.getEntry().get(0).getResource();
root.getChildNodes().add(comp.getText().getDiv());
Resource subject = ResourceUtilities.getById(feed, null, comp.getSubject().getReference());
if (subject != null && subject instanceof DomainResource) {
root.hr();
root.getChildNodes().add(((DomainResource) subject).getText().getDiv());
}
List<SectionComponent> sections = comp.getSection();
renderSections(feed, root, sections, 1);
return root;
}
use of org.hl7.fhir.r4b.model.DomainResource in project org.hl7.fhir.core by hapifhir.
the class ProfileUtilities method checkTypeDerivation.
public void checkTypeDerivation(String purl, StructureDefinition srcSD, ElementDefinition base, ElementDefinition derived, TypeRefComponent ts) {
boolean ok = false;
CommaSeparatedStringBuilder b = new CommaSeparatedStringBuilder();
String t = ts.getWorkingCode();
for (TypeRefComponent td : base.getType()) {
;
String tt = td.getWorkingCode();
b.append(tt);
if (td.hasCode() && (tt.equals(t))) {
ok = true;
}
if (!ok) {
StructureDefinition sdt = context.fetchTypeDefinition(tt);
if (sdt != null && (sdt.getAbstract() || sdt.getKind() == StructureDefinitionKind.LOGICAL)) {
StructureDefinition sdb = context.fetchTypeDefinition(t);
while (sdb != null && !ok) {
ok = sdb.getType().equals(sdt.getType());
sdb = context.fetchResource(StructureDefinition.class, sdb.getBaseDefinition());
}
}
}
// work around for old badly generated SDs
if (DONT_DO_THIS && Utilities.existsInList(tt, "Extension", "uri", "string", "Element")) {
ok = true;
}
if (DONT_DO_THIS && Utilities.existsInList(tt, "Resource", "DomainResource") && pkp.isResource(t)) {
ok = true;
}
if (ok && ts.hasTargetProfile()) {
// check that any derived target has a reference chain back to one of the base target profiles
for (UriType u : ts.getTargetProfile()) {
String url = u.getValue();
boolean tgtOk = !td.hasTargetProfile() || td.hasTargetProfile(url);
while (url != null && !tgtOk) {
StructureDefinition sd = context.fetchRawProfile(url);
if (sd == null) {
if (messages != null) {
messages.add(new ValidationMessage(Source.InstanceValidator, IssueType.BUSINESSRULE, purl + "#" + derived.getPath(), "Cannot check whether the target profile " + url + " is valid constraint on the base because it is not known", IssueSeverity.WARNING));
}
url = null;
// suppress error message
tgtOk = true;
} else {
url = sd.getBaseDefinition();
tgtOk = td.hasTargetProfile(url);
}
}
if (!tgtOk) {
if (messages == null) {
throw new FHIRException(context.formatMessage(I18nConstants.ERROR_AT__THE_TARGET_PROFILE__IS_NOT__VALID_CONSTRAINT_ON_THE_BASE_, purl, derived.getPath(), url, td.getTargetProfile()));
} else {
messages.add(new ValidationMessage(Source.InstanceValidator, IssueType.BUSINESSRULE, derived.getPath(), "The target profile " + u.getValue() + " is not a valid constraint on the base (" + td.getTargetProfile() + ") at " + derived.getPath(), IssueSeverity.ERROR));
}
}
}
}
}
if (!ok) {
throw new DefinitionException(context.formatMessage(I18nConstants.STRUCTUREDEFINITION__AT__ILLEGAL_CONSTRAINED_TYPE__FROM__IN_, purl, derived.getPath(), t, b.toString(), srcSD.getUrl()));
}
}
use of org.hl7.fhir.r4b.model.DomainResource in project org.hl7.fhir.core by hapifhir.
the class NarrativeGenerator method generateByProfile.
private boolean generateByProfile(DomainResource r, StructureDefinition profile, boolean showCodeDetails) {
XhtmlNode x = new XhtmlNode(NodeType.Element, "div");
x.para().b().tx("Generated Narrative" + (showCodeDetails ? " with Details" : ""));
try {
generateByProfile(r, profile, r, profile.getSnapshot().getElement(), profile.getSnapshot().getElement().get(0), getChildrenForPath(profile.getSnapshot().getElement(), r.getResourceType().toString()), x, r.getResourceType().toString(), showCodeDetails);
} catch (Exception e) {
e.printStackTrace();
x.para().b().setAttribute("style", "color: maroon").tx("Exception generating Narrative: " + e.getMessage());
}
inject(r, x, NarrativeStatus.GENERATED);
return true;
}
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