Examples with DomainResource org.hl7.fhir.r4b.model.DomainResource used on opensource projects

Example 56 with DomainResource

use of org.hl7.fhir.r4b.model.DomainResource in project org.hl7.fhir.core by hapifhir.

the class NarrativeRemover method execute.

private static void execute(File folder) {
    for (File f : folder.listFiles()) {
        if (f.isDirectory())
            execute(f);
        else {
            System.out.println(f.getAbsolutePath());
            try {
                Resource r = new JsonParser().parse(new FileInputStream(f));
                if (r instanceof DomainResource) {
                    DomainResource d = (DomainResource) r;
                    d.setText(null);
                    new JsonParser().compose(new FileOutputStream(f), d);
                }
            } catch (Exception e) {
                e.printStackTrace();
            }
        }
    }
}

Example 57 with DomainResource

use of org.hl7.fhir.r4b.model.DomainResource in project org.hl7.fhir.core by hapifhir.

the class XmlParserBase method parseDomainResourceContained.

protected DomainResource parseDomainResourceContained(XmlPullParser xpp) throws IOException, FHIRFormatError, XmlPullParserException {
    next(xpp);
    int eventType = nextNoWhitespace(xpp);
    if (eventType == XmlPullParser.START_TAG) {
        DomainResource dr = (DomainResource) parseResource(xpp);
        nextNoWhitespace(xpp);
        next(xpp);
        return dr;
    } else {
        unknownContent(xpp);
        return null;
    }
}

Example 58 with DomainResource

use of org.hl7.fhir.r4b.model.DomainResource in project org.hl7.fhir.core by hapifhir.

the class ResourceRenderer method render.

/**
 * given a resource, update it's narrative with the best rendering available
 *
 * @param r - the domain resource in question
 *
 * @throws IOException
 * @throws EOperationOutcome
 * @throws FHIRException
 */
public void render(DomainResource r) throws IOException, FHIRException, EOperationOutcome {
    XhtmlNode x = new XhtmlNode(NodeType.Element, "div");
    boolean ofr = forResource;
    boolean hasExtensions;
    try {
        forResource = true;
        hasExtensions = render(x, r);
    } finally {
        forResource = ofr;
    }
    inject(r, x, hasExtensions ? NarrativeStatus.EXTENSIONS : NarrativeStatus.GENERATED);
}

Example 59 with DomainResource

use of org.hl7.fhir.r4b.model.DomainResource in project odm2fhir by num-codex.

the class Subject method map.

public Stream<DomainResource> map(SubjectData subjectData) {
    var value = getIdentifierAssigner();
    if (!ENVIRONMENT.containsProperty("debug")) {
        value = sha256Hex(value);
    }
    var organizationIdentifier = new Identifier().setSystem(getIdentifierSystem(ORGANIZATION)).setValue(value);
    var organization = (Organization) new Organization().setName(getIdentifierAssigner()).addIdentifier(organizationIdentifier).setId(sha256Hex(organizationIdentifier.getSystem() + organizationIdentifier.getValue()));
    organizationReference = new Reference(format("%s/%s", ORGANIZATION.toCode(), organization.getId()));
    value = subjectData.getSubjectKey();
    if (!ENVIRONMENT.containsProperty("debug")) {
        value = sha256Hex(value);
    }
    var patientIdentifier = new Identifier().setSystem(getIdentifierSystem(PATIENT)).setValue(value).setType(new CodeableConcept(new Coding().setSystem(IDENTIFIER_TYPE_CODES.getUrl()).setCode(MR.toCode()))).setAssigner(organizationReference);
    patient = (Patient) new Patient().addIdentifier(patientIdentifier).setId(sha256Hex(patientIdentifier.getSystem() + patientIdentifier.getValue())).setMeta(new Meta().addProfile(NUMStructureDefinition.PATIENT.getUrl()));
    patientReference = new Reference(format("%s/%s", PATIENT.toCode(), patient.getId()));
    return Stream.concat(Stream.of(patient, organization), subjectData.getMergedStudyEventData().stream().flatMap(studyEventData -> new StudyEvent().map(this, studyEventData)).peek(this::setId).peek(this::setPatientSubject));
}

Example 60 with DomainResource

use of org.hl7.fhir.r4b.model.DomainResource in project odm2fhir by num-codex.

the class ImagingProcedures method map.

protected Stream<DomainResource> map(FormData formData) {
    var techniqueGroup = formData.getItemGroupData("bildgebung.bildgebende_verfahren_ct");
    var befundGroup = formData.getItemGroupData("bildgebung.befund_bildgebender_verfahren_ct");
    var generalCoding = formData.getItemData("bildgebende_verfahren");
    if (!"1".equals(generalCoding.getValue())) {
        return Stream.empty();
    }
    var itemDatas = Stream.of(techniqueGroup.getItemData(), befundGroup.getItemData()).flatMap(List::stream).collect(toMap(ItemData::getItemOID, identity()));
    return Stream.of("ct", "roentgen", "us").filter(type -> contains(itemDatas.get("bildgebende_verfahren_" + type).getValue(), "410605003")).filter(type -> !(itemDatas.get("befund_bildgebender_verfahren_" + type).isEmpty())).flatMap(type -> {
        var diagnosticReport = createDiagnosticReport(itemDatas.get("befund_bildgebender_verfahren_" + type));
        var procedure = createProcedure(itemDatas.get("bildgebende_verfahren_" + type)).addReport(new Reference(format("%s/%s", DIAGNOSTICREPORT.toCode(), diagnosticReport.getId())));
        return Stream.of(diagnosticReport, procedure);
    });
}