Examples with DomainResource org.hl7.fhir.r4b.model.DomainResource used on opensource projects

Example 66 with DomainResource

use of org.hl7.fhir.r4b.model.DomainResource in project MobileAccessGateway by i4mi.

the class Iti65RequestConverter method transformReferenceToIdentifiable.

/**
 * FHIR Reference -> XDS Identifiable
 * Only for References to Patients or Encounters
 * Identifier is extracted from contained resource or from Reference URL
 * @param reference
 * @param container
 * @return
 */
public Identifiable transformReferenceToIdentifiable(Reference reference, DomainResource container) {
    if (reference.hasReference()) {
        String targetRef = reference.getReference();
        List<Resource> resources = container.getContained();
        for (Resource resource : resources) {
            if (targetRef.equals(resource.getId())) {
                if (resource instanceof Patient) {
                    return transform(((Patient) resource).getIdentifierFirstRep());
                } else if (resource instanceof Encounter) {
                    return transform(((Encounter) resource).getIdentifierFirstRep());
                }
            }
        }
        Identifiable result = patientRefCreator.resolvePatientReference(reference.getReference());
        if (result != null)
            return result;
        MultiValueMap<String, String> vals = UriComponentsBuilder.fromUriString(targetRef).build().getQueryParams();
        if (vals.containsKey("identifier")) {
            String ids = vals.getFirst("identifier");
            if (ids == null)
                return null;
            String[] identifier = ids.split("\\|");
            if (identifier.length == 2) {
                return new Identifiable(identifier[1], new AssigningAuthority(noPrefix(identifier[0])));
            }
        }
    } else if (reference.hasIdentifier()) {
        return transform(reference.getIdentifier());
    }
    throw new InvalidRequestException("Cannot resolve reference to " + (reference.getReference() != null ? reference.getReference().toString() : ""));
}

Example 67 with DomainResource

use of org.hl7.fhir.r4b.model.DomainResource in project cqf-ruler by DBCG.

the class ExpressionEvaluationIT method testExpressionEvaluationANCIND01MeasureDomain.

@Test
public void testExpressionEvaluationANCIND01MeasureDomain() throws Exception {
    DomainResource measure = (DomainResource) measures.get("ANCIND01");
    // Patient First
    uploadTests("test/measure/ANCIND01/charity-otala-1/Patient");
    Map<String, IBaseResource> resources = uploadTests("test/measure/ANCIND01");
    IBaseResource patient = resources.get("charity-otala-1");
    Object ipResult = expressionEvaluation.evaluateInContext(measure, "ANCIND01.\"Initial Population\"", patient.getIdElement().getIdPart(), new SystemRequestDetails());
    assertTrue(ipResult instanceof Boolean);
    assertTrue(((Boolean) ipResult).booleanValue());
    Object denomResult = expressionEvaluation.evaluateInContext(measure, "ANCIND01.Denominator", patient.getIdElement().getIdPart(), new SystemRequestDetails());
    assertTrue(denomResult instanceof Boolean);
    assertTrue(((Boolean) denomResult).booleanValue());
    Object numerResult = expressionEvaluation.evaluateInContext(measure, "ANCIND01.Numerator", patient.getIdElement().getIdPart(), new SystemRequestDetails());
    assertTrue(numerResult instanceof Boolean);
    assertTrue(((Boolean) numerResult).booleanValue());
}

Example 68 with DomainResource

use of org.hl7.fhir.r4b.model.DomainResource in project cqf-ruler by DBCG.

the class ExpressionEvaluationIT method testExpressionEvaluationANCDT01PlanDefinitionDomain.

@Test
public void testExpressionEvaluationANCDT01PlanDefinitionDomain() throws Exception {
    DomainResource planDefinition = (DomainResource) planDefinitions.get("lcs-cds-patient-view");
    // Patient First
    uploadTests("test/plandefinition/LungCancerScreening/Former-Smoker/Patient");
    Map<String, IBaseResource> resources = uploadTests("test/plandefinition/LungCancerScreening/Former-Smoker");
    IBaseResource patient = resources.get("Former-Smoker");
    Object isFormerSmoker = expressionEvaluation.evaluateInContext(planDefinition, "Is former smoker who quit within past 15 years", patient.getIdElement().getIdPart(), true, new SystemRequestDetails());
    assertTrue(isFormerSmoker instanceof Boolean);
    assertTrue(((Boolean) isFormerSmoker).booleanValue());
    Object isCurrentSmoker = expressionEvaluation.evaluateInContext(planDefinition, "Is current smoker", patient.getIdElement().getIdPart(), true, new SystemRequestDetails());
    assertTrue(isCurrentSmoker instanceof Boolean);
    assertTrue((!(Boolean) isCurrentSmoker));
}

Example 69 with DomainResource

use of org.hl7.fhir.r4b.model.DomainResource in project cqf-ruler by DBCG.

the class ActivityDefinitionApplyProviderIT method testActivityDefinitionApply.

@Test
public void testActivityDefinitionApply() throws Exception {
    DomainResource activityDefinition = (DomainResource) activityDefinitions.get("opioidcds-risk-assessment-request");
    // Patient First
    Map<String, IBaseResource> resources = uploadTests("test/activitydefinition/Patient");
    IBaseResource patient = resources.get("ExamplePatient");
    Resource applyResult = activityDefinitionApplyProvider.apply(new SystemRequestDetails(), activityDefinition.getIdElement(), patient.getIdElement().getIdPart(), null, null, null, null, null, null, null, null);
    assertTrue(applyResult instanceof ServiceRequest);
    assertEquals("454281000124100", ((ServiceRequest) applyResult).getCode().getCoding().get(0).getCode());
}

Example 70 with DomainResource

use of org.hl7.fhir.r4b.model.DomainResource in project cqf-ruler by DBCG.

the class ExpressionEvaluation method getLibraryReferences.

private List<Reference> getLibraryReferences(DomainResource instance, JpaFhirDal jpaFhirDal, RequestDetails theRequest) {
    List<Reference> references = new ArrayList<>();
    if (instance.hasContained()) {
        for (Resource resource : instance.getContained()) {
            if (resource instanceof Library) {
                resource.setId(resource.getIdElement().getIdPart().replace("#", ""));
                jpaFhirDal.update((Library) resource);
            // getLibraryLoader().putLibrary(resource.getIdElement().getIdPart(),
            // getLibraryLoader().toElmLibrary((Library) resource));
            }
        }
    }
    if (instance instanceof ActivityDefinition) {
        references.addAll(((ActivityDefinition) instance).getLibrary());
    } else if (instance instanceof PlanDefinition) {
        references.addAll(((PlanDefinition) instance).getLibrary());
    } else if (instance instanceof Measure) {
        references.addAll(((Measure) instance).getLibrary());
    }
    for (Extension extension : instance.getExtensionsByUrl("http://hl7.org/fhir/StructureDefinition/cqif-library")) {
        Type value = extension.getValue();
        if (value instanceof Reference) {
            references.add((Reference) value);
        } else {
            throw new RuntimeException("Library extension does not have a value of type reference");
        }
    }
    return cleanReferences(references);
}