use of org.hl7.fhir.r4b.model.ElementDefinition in project kindling by HL7.
the class ProfileGenerator method addExtensionConstraint.
private ElementDefinition addExtensionConstraint(StructureDefinition sd, ElementDefinition ed) {
if (!typeIsExtension(ed))
return ed;
if (hasConstraint(ed, "ext-1"))
return ed;
ElementDefinitionConstraintComponent inv = ed.addConstraint();
inv.setKey("ext-1");
inv.setSeverity(ConstraintSeverity.ERROR);
inv.setHuman("Must have either extensions or value[x], not both");
inv.setExpression("extension.exists() != value.exists()");
inv.setXpath("exists(f:extension)!=exists(f:*[starts-with(local-name(.), \"value\")])");
inv.setSource("http://hl7.org/fhir/StructureDefinition/Extension");
return ed;
}
use of org.hl7.fhir.r4b.model.ElementDefinition in project kindling by HL7.
the class ProfileGenerator method generate.
public StructureDefinition generate(ProfiledType pt, List<ValidationMessage> issues) throws Exception {
StructureDefinition p = new StructureDefinition();
p.setId(pt.getName());
p.setUrl("http://hl7.org/fhir/StructureDefinition/" + pt.getName());
p.setBaseDefinition("http://hl7.org/fhir/StructureDefinition/" + pt.getBaseType());
p.setKind(StructureDefinitionKind.COMPLEXTYPE);
p.setType(pt.getBaseType());
p.setDerivation(TypeDerivationRule.CONSTRAINT);
p.setAbstract(false);
p.setUserData("filename", pt.getName().toLowerCase());
p.setUserData("path", "datatypes.html#" + pt.getName());
p.setFhirVersion(version);
p.setVersion(version.toCode());
ToolingExtensions.setStandardsStatus(p, StandardsStatus.NORMATIVE, "4.0.0");
p.setStatus(PublicationStatus.fromCode("active"));
ToolResourceUtilities.updateUsage(p, "core");
p.setName(pt.getName());
p.setPublisher("HL7 FHIR Standard");
p.addContact().getTelecom().add(Factory.newContactPoint(ContactPointSystem.URL, "http://hl7.org/fhir"));
p.setDescription("Base StructureDefinition for Type " + pt.getName() + ": " + pt.getDefinition());
p.setDescription(pt.getDefinition());
p.setDate(genDate.getTime());
// first, the differential
p.setName(pt.getName());
ElementDefinition e = new ElementDefinition();
String idroot = e.getId();
e.setPath(pt.getBaseType());
// e.setSliceName(pt.getName());
e.setShort(pt.getDefinition());
e.setDefinition(preProcessMarkdown(pt.getDescription(), "??"));
e.setMin(0);
e.setMax("*");
e.setIsModifier(false);
String s = definitions.getTLAs().get(pt.getName().toLowerCase());
if (s == null)
throw new Exception("There is no TLA for '" + pt.getName() + "' in fhir.ini");
ElementDefinitionConstraintComponent inv = new ElementDefinitionConstraintComponent();
inv.setKey(s + "-1");
inv.setRequirements(pt.getInvariant().getRequirements());
inv.setSeverity(ConstraintSeverity.ERROR);
inv.setHuman(pt.getInvariant().getEnglish());
if (!"n/a".equals(pt.getInvariant().getExpression())) {
fpUsages.add(new FHIRPathUsage(pt.getName(), pt.getName(), pt.getName(), null, pt.getInvariant().getExpression()));
inv.setExpression(pt.getInvariant().getExpression());
}
inv.setXpath(pt.getInvariant().getXpath());
e.getConstraint().add(inv);
p.setDifferential(new StructureDefinitionDifferentialComponent());
p.getDifferential().getElement().add(e);
StructureDefinition base = getTypeSnapshot(pt.getBaseType());
if (!pt.getRules().isEmpty()) {
// throw new Exception("todo");
for (String rule : pt.getRules().keySet()) {
String[] parts = rule.split("\\.");
String value = pt.getRules().get(rule);
ElementDefinition er = findElement(p.getDifferential(), pt.getBaseType() + '.' + parts[0]);
if (er == null) {
er = new ElementDefinition();
er.setId(pt.getBaseType() + ':' + p.getId() + '.' + parts[0]);
er.setPath(pt.getBaseType() + '.' + parts[0]);
p.getDifferential().getElement().add(er);
}
if (parts[1].equals("min"))
er.setMin(Integer.parseInt(value));
else if (parts[1].equals("max"))
er.setMax(value);
else if (parts[1].equals("defn"))
er.setDefinition(preProcessMarkdown(value, "er"));
}
List<String> errors = new ArrayList<String>();
new ProfileUtilities(context, null, pkp).sortDifferential(base, p, p.getName(), errors, true);
for (String se : errors) issues.add(new ValidationMessage(Source.ProfileValidator, IssueType.STRUCTURE, -1, -1, p.getUrl(), se, IssueSeverity.WARNING));
}
reset();
// now, the snapshot
new ProfileUtilities(context, issues, pkp).generateSnapshot(base, p, "http://hl7.org/fhir/StructureDefinition/" + pt.getBaseType(), "http://hl7.org/fhir", p.getName());
// for (ElementDefinition ed : p.getSnapshot().getElement())
// generateElementDefinition(ed, getParent(ed, p.getSnapshot().getElement()));
p.getDifferential().getElement().get(0).getType().clear();
p.getSnapshot().getElement().get(0).getType().clear();
XhtmlNode div = new XhtmlNode(NodeType.Element, "div");
div.addTag("h2").addText("Data type " + pt.getName());
div.addTag("p").addText(pt.getDefinition());
div.addTag("h3").addText("Rule");
div.addTag("p").addText(pt.getInvariant().getEnglish());
div.addTag("p").addText("XPath:");
div.addTag("blockquote").addTag("pre").addText(pt.getInvariant().getXpath());
p.setText(new Narrative());
p.getText().setStatus(NarrativeStatus.GENERATED);
p.getText().setDiv(div);
addElementConstraintToSnapshot(p);
new ProfileUtilities(context, issues, pkp).setIds(p, false);
checkHasTypes(p);
return p;
}
use of org.hl7.fhir.r4b.model.ElementDefinition in project kindling by HL7.
the class ProfileGenerator method generateXhtml.
public StructureDefinition generateXhtml() throws Exception {
uml.getTypes().put("html:div", new UMLPrimitive("html:div"));
StructureDefinition p = new StructureDefinition();
p.setId("xhtml");
p.setUrl("http://hl7.org/fhir/StructureDefinition/xhtml");
p.setKind(StructureDefinitionKind.PRIMITIVETYPE);
p.setAbstract(false);
p.setUserData("filename", "xhtml");
p.setUserData("path", "narrative.html#xhtml");
p.setBaseDefinition("http://hl7.org/fhir/StructureDefinition/Element");
p.setType("xhtml");
p.setDerivation(TypeDerivationRule.SPECIALIZATION);
p.setFhirVersion(version);
p.setVersion(version.toCode());
ToolingExtensions.setStandardsStatus(p, StandardsStatus.NORMATIVE, "4.0.0");
ToolResourceUtilities.updateUsage(p, "core");
p.setName("xhtml");
p.setPublisher("HL7 FHIR Standard");
p.addContact().getTelecom().add(Factory.newContactPoint(ContactPointSystem.URL, "http://hl7.org/fhir"));
p.setDescription("Base StructureDefinition for xhtml Type");
p.setDate(genDate.getTime());
p.setStatus(PublicationStatus.fromCode("active"));
Set<String> containedSlices = new HashSet<String>();
// first, the differential
p.setDifferential(new StructureDefinitionDifferentialComponent());
ElementDefinition ec = new ElementDefinition();
p.getDifferential().getElement().add(ec);
ec.setId("xhtml");
ec.setPath("xhtml");
ec.setShort("Primitive Type " + "xhtml");
ec.setDefinition("XHTML");
ec.setMin(0);
ec.setMax("*");
ec = new ElementDefinition();
p.getDifferential().getElement().add(ec);
ec.setId("xhtml" + ".extension");
ec.setPath("xhtml" + ".extension");
ec.setMax("0");
ec = new ElementDefinition();
p.getDifferential().getElement().add(ec);
ec.setId("xhtml" + ".value");
ec.setPath("xhtml" + ".value");
ec.addRepresentation(PropertyRepresentation.XHTML);
ec.setShort("Actual xhtml");
ec.setDefinition("Actual xhtml");
ec.setMin(1);
ec.setMax("1");
TypeRefComponent t = ec.addType();
t.setCodeElement(new UriType());
t.getFormatCommentsPre().add("Note: special primitive values have a FHIRPath system type. e.g. this is compiler magic (d)");
t.setCode(Constants.NS_SYSTEM_TYPE + "String");
ToolingExtensions.addUriExtension(t, ToolingExtensions.EXT_FHIR_TYPE, "string");
reset();
// now. the snapshot
p.setSnapshot(new StructureDefinitionSnapshotComponent());
ElementDefinition ec1 = new ElementDefinition(true, ElementDefinition.NOT_MODIFIER, ElementDefinition.NOT_IN_SUMMARY);
p.getSnapshot().getElement().add(ec1);
ec1.setId("xhtml");
ec1.setPath("xhtml");
ec1.setShort("Primitive Type " + "xhtml");
ec1.setDefinition("XHTML");
ec1.setMin(0);
ec1.setMin(0);
ec1.setMax("*");
ec1.makeBase();
generateElementDefinition(p, ec1, null);
ElementDefinition ec2 = new ElementDefinition(true, ElementDefinition.NOT_MODIFIER, ElementDefinition.NOT_IN_SUMMARY);
p.getSnapshot().getElement().add(ec2);
ec2.setId("xhtml.id");
ec2.setPath("xhtml.id");
ec2.addRepresentation(PropertyRepresentation.XMLATTR);
ec2.setDefinition("unique id for the element within a resource (for internal references)");
ec2.setMin(0);
ec2.setMax("1");
ec2.setShort("xml:id (or equivalent in JSON)");
TypeRefComponent tr = ec2.addType();
t.getFormatCommentsPre().add("Note: special primitive values have a FHIRPath system type. e.g. this is compiler magic (e)");
tr.setCode(Constants.NS_SYSTEM_TYPE + "String");
ToolingExtensions.addUriExtension(t, ToolingExtensions.EXT_FHIR_TYPE, "string");
generateElementDefinition(p, ec2, ec1);
ec2.makeBase("Element.id", 0, "1");
ElementDefinition ex = makeExtensionSlice("extension", p, p.getSnapshot(), null, "xhtml");
ex.setMax("0");
ElementDefinition ec3 = new ElementDefinition(true, ElementDefinition.NOT_MODIFIER, ElementDefinition.NOT_IN_SUMMARY);
p.getSnapshot().getElement().add(ec3);
ec3.setId("xhtml.value");
ec3.setPath("xhtml.value");
ec3.addRepresentation(PropertyRepresentation.XHTML);
ec3.setShort("Actual xhtml");
ec3.setDefinition("Actual xhtml");
ec3.setMin(1);
ec3.setMax("1");
t = ec3.addType();
t.setCodeElement(new UriType());
t.getFormatCommentsPre().add("Note: special primitive values have a FHIRPath system type. e.g. this is compiler magic (f)");
t.setCode(Constants.NS_SYSTEM_TYPE + "String");
ToolingExtensions.addUriExtension(t, ToolingExtensions.EXT_FHIR_TYPE, "string");
ec3.makeBase();
generateElementDefinition(p, ec3, ec);
containedSlices.clear();
addElementConstraintToSnapshot(p);
XhtmlNode div = new XhtmlNode(NodeType.Element, "div");
div.addText("to do");
p.setText(new Narrative());
p.getText().setStatus(NarrativeStatus.GENERATED);
p.getText().setDiv(div);
checkHasTypes(p);
return p;
}
use of org.hl7.fhir.r4b.model.ElementDefinition in project kindling by HL7.
the class ProfileGenerator method addElementConstraint.
/*
* // resource
// domain resource
for (ElementDefn child : definitions.getBaseResources().get("DomainResource").getRoot().getElements())
defineElement(null, p, p.getSnapshot(), child, r.getRoot().getName()+"."+child.getName(), containedSlices, new ArrayList<ProfileGenerator.SliceHandle>(), SnapShotMode.Resource);
*/
/*
private String registerMapping(ConformancePackage ap, StructureDefinition p, String m) {
for (StructureDefinitionMappingComponent map : p.getMapping()) {
if (map.getUri().equals(m))
return map.getIdentity();
}
StructureDefinitionMappingComponent map = new StructureDefinitionMappingComponent();
MappingSpace space = definitions.getMapTypes().get(m);
if (space != null)
map.setIdentity(space.getId());
else
map.setIdentity("m" + Integer.toString(p.getMapping().size()+1));
map.setUri(m);
String name = ap.metadata(m+"-name");
if (Utilities.noString(name) && space != null)
name = space.getTitle();
if (!Utilities.noString(name))
map.setName(name);
String comments = ap.metadata(m+"-comments");
if (Utilities.noString(comments) && space != null)
comments = space.getPreamble();
if (!Utilities.noString(comments))
map.setComments(comments);
return map.getIdentity();
}
*/
private ElementDefinition addElementConstraint(StructureDefinition sd, ElementDefinition ed) {
if (!ed.getPath().contains(".") && sd.getKind() == StructureDefinitionKind.RESOURCE)
return ed;
if (hasSystemType(ed))
return ed;
if (isResource(ed))
return ed;
if (hasConstraint(ed, "ele-1"))
return ed;
ElementDefinitionConstraintComponent inv = ed.addConstraint();
inv.setKey("ele-1");
inv.setSeverity(ConstraintSeverity.ERROR);
inv.setHuman("All FHIR elements must have a @value or children");
inv.setExpression("hasValue() or (children().count() > id.count())");
inv.setXpath("@value|f:*|h:div");
inv.setSource("http://hl7.org/fhir/StructureDefinition/Element");
return ed;
}
use of org.hl7.fhir.r4b.model.ElementDefinition in project kindling by HL7.
the class ProfileGenerator method produceOpParam.
private void produceOpParam(String path, List<OperationDefinitionParameterComponent> opd, OperationParameter p, OperationParameterUse defUse) throws Exception {
OperationDefinitionParameterComponent pp = new OperationDefinitionParameterComponent();
pp.setName(p.getName());
if (path.contains("."))
pp.setUse(defUse);
else if (p.getUse().equals("in"))
pp.setUse(OperationParameterUse.IN);
else if (p.getUse().equals("out"))
pp.setUse(OperationParameterUse.OUT);
else
// but this is validated elsewhere
throw new Exception("Unable to determine parameter use: " + p.getUse() + " at " + path + "." + p.getName());
pp.setDocumentation(preProcessMarkdown(p.getDoc(), "Operation Parameter Doco"));
pp.setMin(p.getMin());
pp.setMax(p.getMax());
if (p.getBs() != null) {
if (p.getBs().hasMax())
throw new Error("Max binding not handled yet");
pp.setBinding(new OperationDefinitionParameterBindingComponent().setStrength(p.getBs().getStrength()).setValueSet(buildValueSetReference(p.getBs())));
if (!Utilities.noString(p.getBinding().getName())) {
pp.getBinding().addExtension("http://hl7.org/fhir/StructureDefinition/elementdefinition-bindingName", new StringType(p.getBinding().getName()));
}
}
if (!Utilities.noString(p.getProfile())) {
pp.addTargetProfile(p.getProfile());
}
opd.add(pp);
if (p.getFhirType().equals("Tuple")) {
for (OperationParameter part : p.getParts()) {
produceOpParam(path + "." + p.getName(), pp.getPart(), part, pp.getUse());
}
} else {
List<TypeRef> trs = new TypeParser(version.toCode()).parse(p.getFhirType(), false, null, null, false);
if (trs.size() > 1) {
if (p.getSearchType() != null)
pp.setSearchType(SearchParamType.fromCode(p.getSearchType()));
pp.setType(Enumerations.FHIRAllTypes.fromCode("Element"));
for (TypeRef tr : trs) {
pp.addExtension(ToolingExtensions.EXT_ALLOWED_TYPE, new UriType(tr.getName()));
if (tr.getParams().size() > 0)
throw new Error("Multiple types for an operation parameter, where one is a reference, is not supported by the build tools");
}
} else {
TypeRef tr = trs.get(0);
if (definitions.getConstraints().containsKey(tr.getName())) {
ProfiledType pt = definitions.getConstraints().get(tr.getName());
pp.setType(Enumerations.FHIRAllTypes.fromCode(pt.getBaseType().equals("*") ? "Type" : pt.getBaseType()));
pp.addTargetProfile("http://hl7.org/fhir/StructureDefinition/" + pt.getName());
} else {
if (p.getSearchType() != null)
pp.setSearchType(SearchParamType.fromCode(p.getSearchType()));
pp.setType(Enumerations.FHIRAllTypes.fromCode(tr.getName().equals("*") ? "Type" : tr.getName()));
if (tr.getParams().size() == 1 && !tr.getParams().get(0).equals("Any"))
pp.addTargetProfile("http://hl7.org/fhir/StructureDefinition/" + tr.getParams().get(0));
}
}
}
}
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