Examples with Identifier org.hl7.fhir.r4b.model.Identifier used on opensource projects

Example 46 with Identifier

use of org.hl7.fhir.r4b.model.Identifier in project hl7v2-fhir-converter by LinuxForHealth.

the class Hl7IdentifierFHIRConversionTest method documentReferenceIdentifierTest3.

@Test
void documentReferenceIdentifierTest3() {
    // Placer from OBR, Filler from TXA-15
    String documentReferenceMessage = "MSH|^~\\&|HL7Soup|Instance1|MCM|Instance2|200911021022|Security|MDM^T02|64322|P|2.6|123|456|ER|AL|USA|ASCII|en|2.6|56789^NID^UID|MCM||||\n" + "PID|1||000054321^^^MRN|||||||||||||M|CAT|||||N\n" + "PV1|1|I|||||||||||||||||||||||||||||||||||||||||||\n" + "ORC|NW|||PGN001|SC|D|1||20170825010500|MS|MS||||20170825010500|\n" + "OBR|1|CD_000000^OE||2244^General Order|||20170825010500||||||Relevant Clinical Information|||||||002|||||F|||550600^Tsadok550600^Janetary~660600^Merrit660600^Darren^F~770600^Das770600^Surjya^P~880600^Winter880600^Oscar^||||770600&Das770600&Surjya&P^^^6N^1234^A|\n" + "TXA|1||B45678||||||||||||FON001^IE\n";
    DocumentReference report = ResourceUtils.getDocumentReference(ftv, documentReferenceMessage);
    // Expect 3 identifiers
    assertThat(report.hasIdentifier()).isTrue();
    assertThat(report.getIdentifier()).hasSize(3);
    List<Identifier> identifiers = report.getIdentifier();
    // Match the three id's to position; we can't depend on an order.
    int posExtId = getIdentifierPositionByValue("200911021022", identifiers);
    assertThat(posExtId).isNotSameAs(-1);
    int posFILLER = getIdentifierPositionByValue("FON001", identifiers);
    assertThat(posFILLER).isNotSameAs(-1);
    int posPLACER = getIdentifierPositionByValue("CD_000000", identifiers);
    assertThat(posPLACER).isNotSameAs(-1);
    // Identifier 1: extID from MSH-7
    Identifier identifier = report.getIdentifier().get(posExtId);
    String value = identifier.getValue();
    String system = identifier.getSystem();
    // MSH-7
    assertThat(value).isEqualTo("200911021022");
    assertThat(system).isEqualTo("urn:id:extID");
    // Identifier 2: Filler
    Identifier identifier3 = report.getIdentifier().get(posFILLER);
    value = identifier3.getValue();
    system = identifier3.getSystem();
    // TXA-15.1
    assertThat(value).isEqualTo("FON001");
    // TXA.15.2
    assertThat(system).isEqualTo("urn:id:IE");
    CodeableConcept type = identifier3.getType();
    Coding coding = type.getCoding().get(0);
    assertThat(type.getText()).isNull();
    assertThat(coding.getSystem()).isEqualTo("http://terminology.hl7.org/CodeSystem/v2-0203");
    assertThat(coding.getCode()).isEqualTo("FILL");
    assertThat(coding.getDisplay()).isEqualTo("Filler Identifier");
    // Identifier 3: Placer
    identifier = report.getIdentifier().get(posPLACER);
    value = identifier.getValue();
    system = identifier.getSystem();
    // OBR.2.1
    assertThat(value).isEqualTo("CD_000000");
    // OBR.2.2
    assertThat(system).isEqualTo("urn:id:OE");
    type = identifier.getType();
    coding = type.getCoding().get(0);
    assertThat(type.getText()).isNull();
    assertThat(coding.getSystem()).isEqualTo("http://terminology.hl7.org/CodeSystem/v2-0203");
    assertThat(coding.getCode()).isEqualTo("PLAC");
    assertThat(coding.getDisplay()).isEqualTo("Placer Identifier");
}

Example 47 with Identifier

use of org.hl7.fhir.r4b.model.Identifier in project hl7v2-fhir-converter by LinuxForHealth.

the class Hl7IdentifierFHIRConversionTest method observationIdentifierTest.

@Test
void observationIdentifierTest() {
    // identifier uses the logic from BUILD_IDENTIFIER_FROM_CWE (OBX.3) and joins FILL or PLAC values with it
    // Filler from OBR-3; OBX-3.1/OBX-3.3
    String joinFillPlaAndObx3 = "MSH|^~\\&|SOARF|E_AMC|||201512201012||ADT^A01|MSG$1|P|2.7||1|||||||\r" + "EVN|A01|201512201012||CI|wiestc|201512201007|1488\r" + "PID|||MRN12345678^^^ID-XYZ^MR~111223333^^^USA^SS~MN1234567^^^MNDOT^DL||||||||||||||\r" + "PV1|1|I|E2^E211^E211B^1488|Elective||||||||||V\r" + "OBR|1|ORD448811^NIST EHR|R-511^NIST Lab Filler|1000^Hepatitis A B C Panel^99USL|||20120628070100|||||||||\r" + "OBX|1|ST|DINnumber^^LSFUSERDATAE||N/A||||||R||||||\r";
    Observation observation = ResourceUtils.getObservation(ftv, joinFillPlaAndObx3);
    // Expect a single identifier
    assertThat(observation.hasIdentifier()).isTrue();
    assertThat(observation.getIdentifier()).hasSize(1);
    // Identifier 1: extID from OBR.3 plus OBX-3.1/OBX-3.3
    Identifier identifier = observation.getIdentifier().get(0);
    String value = identifier.getValue();
    String system = identifier.getSystem();
    // OBR.3.1-OBX.3.1-OBX.3.3
    assertThat(value).isEqualTo("R-511-DINnumber-LSFUSERDATAE");
    assertThat(system).isEqualTo("urn:id:extID");
    // Placer from OBR-2; OBX-3.1
    String msg = "MSH|^~\\&|SOARF|E_AMC|||201512201012||ADT^A01|MSG$1|P|2.7||1|||||||\r" + "EVN|A01|201512201012||CI|wiestc|201512201007|1488\r" + "PID|||MRN12345678^^^ID-XYZ^MR~111223333^^^USA^SS~MN1234567^^^MNDOT^DL||||||||||||||\r" + "PV1|1|I|E2^E211^E211B^1488|Elective||||||||||V\r" + "OBR|1|ORD448811^NIST EHR|^NIST Lab Filler|1000^Hepatitis A B C Panel^99USL|||20120628070100|||||||||\r" + "OBX|1|ST|DINnumber^^||N/A||||||R||||||\r";
    observation = ResourceUtils.getObservation(ftv, msg);
    // Expect a single identifier
    assertThat(observation.hasIdentifier()).isTrue();
    assertThat(observation.getIdentifier()).hasSize(1);
    // Identifier 1: extID from OBR.2 and OBX-3.1
    identifier = observation.getIdentifier().get(0);
    value = identifier.getValue();
    system = identifier.getSystem();
    // OBR.2.1-OBX.3.1
    assertThat(value).isEqualTo("ORD448811-DINnumber");
    assertThat(system).isEqualTo("urn:id:extID");
    // Filler from ORC-3; OBX-3.2
    msg = "MSH|^~\\&|SendTest1|Sendfac1|Receiveapp1|Receivefac1|200603081747|security|PPR^PC1^PPR_PC1|1|P^I|2.6||||||ASCII||\r" + "PID|||555444222111^^^MPI&GenHosp&L^MR||james^anderson||19600614|M||C|||^^^^^626^5641111|^^^^^626^5647654||||||||N\r" + "PV1||I|6N^1234^A^GENHOS||||0100^ANDERSON^CARL|0148^ADDISON^JAMES||SUR|||||||0148^ANDERSON^CARL|S|1400|A|||||||||||||||||||SF|K||||199501102300\r" + "PRB|AD|200603150625|aortic stenosis|53692||2||200603150625\r" + "OBX|1|ST|DINnumber^^LSFUSERDATAE||ECHOCARDIOGRAPHIC REPORT||||||F|||20150930164100|||\r" + "ORC|NW|PON001|FON001|PGN001|SC|D|1||20170825010500|MS|MS||||20170825010500|";
    observation = ResourceUtils.getObservation(ftv, msg);
    // Expect a single identifier
    assertThat(observation.hasIdentifier()).isTrue();
    assertThat(observation.getIdentifier()).hasSize(1);
    // Identifier 1: extID from OBR.3 plus OBX-3.1/OBX-3.3
    identifier = observation.getIdentifier().get(0);
    value = identifier.getValue();
    system = identifier.getSystem();
    // ORC.3-OBX.3.1-OBX.3.3
    assertThat(value).isEqualTo("FON001-DINnumber-LSFUSERDATAE");
    assertThat(system).isEqualTo("urn:id:extID");
    // Placer from ORC-2; OBX-3.1
    msg = "MSH|^~\\&|SendTest1|Sendfac1|Receiveapp1|Receivefac1|200603081747|security|PPR^PC1^PPR_PC1|1|P^I|2.6||||||ASCII||\r" + "PID|||555444222111^^^MPI&GenHosp&L^MR||james^anderson||19600614|M||C|99 Oakland #106^^qwerty^OH^44889||||||||||N\r" + "PV1||I|6N^1234^A^GENHOS||||0100^ANDERSON^CARL|0148^ADDISON^JAMES||SUR|||||||0148^ANDERSON^CARL|S|1400|A||SF|K||||199501102300\r" + "PRB|AD|200603150625|aortic stenosis|53692||2||200603150625\r" + "OBX|1|ST|DINnumber||ECHOCARDIOGRAPHIC REPORT||||||F|||20150930164100|||\r" + "ORC|NW|PON001|||SC|D|1||20170825010500|MS|MS|||||";
    observation = ResourceUtils.getObservation(ftv, msg);
    // Expect a single identifier
    assertThat(observation.hasIdentifier()).isTrue();
    assertThat(observation.getIdentifier()).hasSize(1);
    // Identifier 1: extID from OBR.2 and OBX-3.1
    identifier = observation.getIdentifier().get(0);
    value = identifier.getValue();
    system = identifier.getSystem();
    // ORC.2-OBX.3.1
    assertThat(value).isEqualTo("PON001-DINnumber");
    assertThat(system).isEqualTo("urn:id:extID");
}

Example 48 with Identifier

use of org.hl7.fhir.r4b.model.Identifier in project hl7v2-fhir-converter by LinuxForHealth.

the class Hl7IdentifierFHIRConversionTest method medicationRequestIdentifierTest5.

@Test
void medicationRequestIdentifierTest5() throws IOException {
    // Test: Visit number from PV1-19, extID from RXE-2.1 and RXE-2.3
    String medicationRequest = "MSH|^~\\&|PROSLOV|MYHOSPITAL|WHIA|IBM|20170215080000||RDE^O11^RDE_O11|MSGID005520|T|2.6|||AL|NE|764|ASCII||||||^4086::132:2A57:3C28^IPv6\r" + "PID|1||000054321^^^MRN|||||||||||||||78654\r" + "PV1||I|||||||||||||||||789789\r" + "ORC|NW|||||E|10^BID^D4^^^R||20170215080000\r" + "RXE|^^^20170923230000^^R|999^Ampicillin 250 MG TAB^NDC|100||mg|123^test^ABC||||10||5|";
    MedicationRequest medReq = ResourceUtils.getMedicationRequest(ftv, medicationRequest);
    // Expect 2 identifiers
    assertThat(medReq.hasIdentifier()).isTrue();
    assertThat(medReq.getIdentifier()).hasSize(2);
    List<Identifier> identifiers = medReq.getIdentifier();
    // Match the id's to position; we can't depend on an order.
    int posVN = getIdentifierPositionByValue("789789", identifiers);
    assertThat(posVN).isNotSameAs(-1);
    int posExtId = getIdentifierPositionByValue("999-NDC", identifiers);
    assertThat(posExtId).isNotSameAs(-1);
    // Identifier 1: Visit number
    Identifier identifier = medReq.getIdentifier().get(posVN);
    String value = identifier.getValue();
    String system = identifier.getSystem();
    // PV1.19
    assertThat(value).isEqualTo("789789");
    assertThat(system).isNull();
    CodeableConcept type = identifier.getType();
    DatatypeUtils.checkCommonCodeableConceptAssertions(type, "VN", "Visit number", "http://terminology.hl7.org/CodeSystem/v2-0203", null);
    // Identifier 2: extID based on RXE-2.1 and RXE-2.3
    identifier = medReq.getIdentifier().get(posExtId);
    value = identifier.getValue();
    system = identifier.getSystem();
    // RXE-2.1 and RXE-2.3
    assertThat(value).isEqualTo("999-NDC");
    assertThat(system).isEqualTo("urn:id:extID");
}

Example 49 with Identifier

use of org.hl7.fhir.r4b.model.Identifier in project hl7v2-fhir-converter by LinuxForHealth.

the class Hl7IdentifierFHIRConversionTest method medicationRequestIdentifierTest4.

@Test
void medicationRequestIdentifierTest4() throws IOException {
    // Test: Visit number from MSH-7, no RXO-1
    String medicationRequest = "MSH|^~\\&|PROSLOV|MYHOSPITAL|WHIA|IBM|20170215080000||RDE^O11^RDE_O11|MSGID005520|T|2.6|||AL|NE|764|ASCII||||||^4086::132:2A57:3C28^IPv6\r" + "PID|1||000054321^^^MRN\r" + "PV1||I||||||||SUR||||||||S||A|||||||||||||||||||SF|K||||20170215080000\r" + "ORC|NW|||||E|10^BID^D4^^^R||20170215080000\r" + "RXO|||||||||G||10||5|\r" + "RXE|^^^20170923230000^^R|999^Ampicillin 250 MG TAB^NDC|100||mg|123^test^ABC||||10||5|";
    MedicationRequest medReq = ResourceUtils.getMedicationRequest(ftv, medicationRequest);
    // Expect 2 identifier
    assertThat(medReq.hasIdentifier()).isTrue();
    assertThat(medReq.getIdentifier()).hasSize(2);
    List<Identifier> identifiers = medReq.getIdentifier();
    // Match the id's to position; we can't depend on an order.
    int posVN = getIdentifierPositionByValue("20170215080000", identifiers);
    assertThat(posVN).isNotSameAs(-1);
    int posExtId = getIdentifierPositionByValue("999-NDC", identifiers);
    assertThat(posExtId).isNotSameAs(-1);
    // Identifier 1: Visit number
    Identifier identifier = medReq.getIdentifier().get(posVN);
    String value = identifier.getValue();
    String system = identifier.getSystem();
    // MSH-7
    assertThat(value).isEqualTo("20170215080000");
    assertThat(system).isNull();
    CodeableConcept type = identifier.getType();
    DatatypeUtils.checkCommonCodeableConceptAssertions(type, "VN", "Visit number", "http://terminology.hl7.org/CodeSystem/v2-0203", null);
    // Identifier 2: extID based on RXE-2.1 and RXE-2.3
    identifier = medReq.getIdentifier().get(posExtId);
    value = identifier.getValue();
    system = identifier.getSystem();
    // RXE-2.1 and RXE-2.3
    assertThat(value).isEqualTo("999-NDC");
    assertThat(system).isEqualTo("urn:id:extID");
}

Example 50 with Identifier

use of org.hl7.fhir.r4b.model.Identifier in project hl7v2-fhir-converter by LinuxForHealth.

the class Hl7IdentifierFHIRConversionTest method diagnosticReportIdentifierTestFillerPlacerFromOBR.

@Test
void diagnosticReportIdentifierTestFillerPlacerFromOBR() {
    // Filler and placer from OBR
    String diagnosticReport = "MSH|^~\\&|PROSLOV|MYHOSPITAL|WHIA|IBM|20170825010500||ORU^R01|MSGID22102712|T|2.6\n" + "PID|||1234||DOE^JANE^|||F||||||||||||||||||||||\n" + "ORC|NW|||PGN001|SC|D|1||20170825010500|MS|MS||||20170825010500|\n" + "OBR|1|CC_000000^OE PHIMS Stage|CD_000000|2244^General Order|||20170825010500||||||Relevant Clinical Information|||||||002|||||F\n" + "OBX|1|TX|||Impression: 1. Markedly intense metabolic activity corresponding with the area of nodular enhancement in the left oral cavity.||||||F|||20170825010500\n";
    DiagnosticReport report = ResourceUtils.getDiagnosticReport(ftv, diagnosticReport);
    // Expect 3 identifiers
    assertThat(report.hasIdentifier()).isTrue();
    assertThat(report.getIdentifier()).hasSize(3);
    List<Identifier> identifiers = report.getIdentifier();
    // Match the three id's to position; we can't depend on an order.
    int posExtId = getIdentifierPositionByValue("20170825010500", identifiers);
    assertThat(posExtId).isNotSameAs(-1);
    int posFILLER = getIdentifierPositionByValue("CD_000000", identifiers);
    assertThat(posFILLER).isNotSameAs(-1);
    int posPLACER = getIdentifierPositionByValue("CC_000000", identifiers);
    assertThat(posPLACER).isNotSameAs(-1);
    // Identifier 1: extID with MSH-7
    Identifier identifier = report.getIdentifier().get(posExtId);
    String value = identifier.getValue();
    String system = identifier.getSystem();
    // MSH-7
    assertThat(value).isEqualTo("20170825010500");
    assertThat(system).isEqualTo("urn:id:extID");
    // Identifier 2: Filler
    identifier = report.getIdentifier().get(posFILLER);
    value = identifier.getValue();
    system = identifier.getSystem();
    // OBR-3.1
    assertThat(value).isEqualTo("CD_000000");
    // OBR-3.2 is empty
    assertThat(system).isNull();
    CodeableConcept type = identifier.getType();
    DatatypeUtils.checkCommonCodeableConceptAssertions(type, "FILL", "Filler Identifier", "http://terminology.hl7.org/CodeSystem/v2-0203", null);
    // Identifier 3: Placer
    identifier = report.getIdentifier().get(posPLACER);
    value = identifier.getValue();
    system = identifier.getSystem();
    // OBR-2
    assertThat(value).isEqualTo("CC_000000");
    // OBR-2.2
    assertThat(system).isEqualTo("urn:id:OE_PHIMS_Stage");
    type = identifier.getType();
    DatatypeUtils.checkCommonCodeableConceptAssertions(type, "PLAC", "Placer Identifier", "http://terminology.hl7.org/CodeSystem/v2-0203", null);
}