Examples with Identifier org.hl7.fhir.r4b.model.Identifier used on opensource projects

Example 51 with Identifier

use of org.hl7.fhir.r4b.model.Identifier in project hl7v2-fhir-converter by LinuxForHealth.

the class Hl7IdentifierFHIRConversionTest method serviceRequestIdentifierTest2.

@Test
void serviceRequestIdentifierTest2() {
    // Test 3:
    // - Visit number with PV1-19
    // - filler from OBR
    // - placer from ORC
    String serviceRequest = "MSH|^~\\&|SendTest1|Sendfac1|Receiveapp1|Receivefac1|200603081747|security|PPR^PC1^PPR_PC1|1|P^I|2.6||||||ASCII||\n" + "PID|1||000054321^^^MRN|||||||||||||M|CAT|||||N\n" + "PV1||I|6N^1234^A^GENERAL HOSPITAL2|||||||SUR||||||||S|8846511|A|||||||||||||||||||SF|K||||20170215080000\n" + "PRB|AD|200603150625|aortic stenosis|53692||2||200603150625\n" + "ORC||PON001||||E|^Q6H^D10^^^R\n" + "OBR|1||CD150920001336|||20150930000000|20150930164100|||||||||25055^MARCUSON^PATRICIA^L|||||||||F|||5755^DUNN^CHAD^B~25055^MARCUSON^PATRICIA^L|||WEAKNESS|DAS, SURJYA P||SHIELDS, SHARON A|||||||||";
    ServiceRequest serviceReq = ResourceUtils.getServiceRequest(ftv, serviceRequest);
    // Expect 3 identifiers
    assertThat(serviceReq.hasIdentifier()).isTrue();
    assertThat(serviceReq.getIdentifier()).hasSize(3);
    List<Identifier> identifiers = serviceReq.getIdentifier();
    // Match the id's to position; we can't depend on an order.
    int posVN = getIdentifierPositionByValue("8846511", identifiers);
    assertThat(posVN).isNotSameAs(-1);
    int posFILLER = getIdentifierPositionByValue("CD150920001336", identifiers);
    assertThat(posFILLER).isNotSameAs(-1);
    int posPLACER = getIdentifierPositionByValue("PON001", identifiers);
    assertThat(posPLACER).isNotSameAs(-1);
    // Identifier 1: visit number
    Identifier identifier = serviceReq.getIdentifier().get(posVN);
    String value = identifier.getValue();
    String system = identifier.getSystem();
    // PV1.19
    assertThat(value).isEqualTo("8846511");
    assertThat(system).isNull();
    CodeableConcept type = identifier.getType();
    DatatypeUtils.checkCommonCodeableConceptAssertions(type, "VN", "Visit number", "http://terminology.hl7.org/CodeSystem/v2-0203", null);
    // Identifier 2: filler
    identifier = serviceReq.getIdentifier().get(posFILLER);
    value = identifier.getValue();
    system = identifier.getSystem();
    // OBR.3.1
    assertThat(value).isEqualTo("CD150920001336");
    assertThat(system).isNull();
    type = identifier.getType();
    DatatypeUtils.checkCommonCodeableConceptAssertions(type, "FILL", "Filler Identifier", "http://terminology.hl7.org/CodeSystem/v2-0203", null);
    // Identifier 3: placer
    identifier = serviceReq.getIdentifier().get(posPLACER);
    value = identifier.getValue();
    system = identifier.getSystem();
    // ORC.2.1
    assertThat(value).isEqualTo("PON001");
    assertThat(system).isNull();
    type = identifier.getType();
    DatatypeUtils.checkCommonCodeableConceptAssertions(type, "PLAC", "Placer Identifier", "http://terminology.hl7.org/CodeSystem/v2-0203", null);
}

Example 52 with Identifier

use of org.hl7.fhir.r4b.model.Identifier in project hl7v2-fhir-converter by LinuxForHealth.

the class Hl7IdentifierFHIRConversionTest method encounterIdentifierTest.

@Test
void encounterIdentifierTest() {
    // Test: Visit number from PV1-19
    String encounterMsg = "MSH|^~\\&|MYEHR2.5|RI88140101|KIDSNET_IFL|RIHEALTH|20130531||VXU^V04^VXU_V04|20130531RI881401010105|P|2.6|||AL|NE|764|ASCII||||||^4086::132:2A57:3C28^IPv6\r" + "EVN|A01|20130617154644||01\r" + "PID|||12345^^^^MR||smith^john|||||||||||||112233\r" + "PV1||I||||||||SUR||||||||S||A\r";
    Encounter encounter = ResourceUtils.getEncounter(ftv, encounterMsg);
    // Expect a single identifier
    assertThat(encounter.hasIdentifier()).isTrue();
    assertThat(encounter.getIdentifier()).hasSize(1);
    // Identifier 1: Visit number
    Identifier identifier = encounter.getIdentifier().get(0);
    String value = identifier.getValue();
    String system = identifier.getSystem();
    // PID.18
    assertThat(value).isEqualTo("112233");
    assertThat(system).isNull();
    CodeableConcept type = identifier.getType();
    Coding coding = type.getCoding().get(0);
    assertThat(type.getText()).isNull();
    assertThat(coding.getSystem()).isEqualTo("http://terminology.hl7.org/CodeSystem/v2-0203");
    assertThat(coding.getCode()).isEqualTo("VN");
    assertThat(coding.getDisplay()).isEqualTo("Visit number");
}

Example 53 with Identifier

use of org.hl7.fhir.r4b.model.Identifier in project hl7v2-fhir-converter by LinuxForHealth.

the class Hl7IdentifierFHIRConversionTest method procedureIdentifierTest.

@Test
void procedureIdentifierTest() {
    // with PR1 and PID segments used to create identifiers
    String procedureMsg = "MSH|^~\\&|HL7Soup|Instance1|MCM||200911021022|Security|ADT^A01^ADT_A01|64322|P|2.6|123|456|ER|AL|USA|ASCII|en|2.6|56789^NID^UID|MCM|CDP|^4086::132:2A57:3C28^IPV6|^4086::132:2A57:3C25^IPV6|\n" + "PID|1||000054321^^^MRN|||||||||||||M|CAT|78654^^^ACME||||N\n" + "ROL|5897|UP|AD||20210322133821|20210322133822|10||Hospital|ST||||USA\n" + "PR1|1|ICD10|B45678|Fix break|20210322155008|A|75||V46|80|||32|1|D22|G45|1|G|P98|X|0|0\n";
    Procedure procedure = ResourceUtils.getProcedure(ftv, procedureMsg);
    // Expect 2 identifiers
    assertThat(procedure.hasIdentifier()).isTrue();
    assertThat(procedure.getIdentifier()).hasSize(2);
    List<Identifier> identifiers = procedure.getIdentifier();
    // Match the three id's to position; we can't depend on an order.
    int posExtId = getIdentifierPositionByValue("P98", identifiers);
    assertThat(posExtId).isNotSameAs(-1);
    int posACME = getIdentifierPositionByValue("78654", identifiers);
    assertThat(posACME).isNotSameAs(-1);
    // Identifier 1: PR1.19
    Identifier identifier = procedure.getIdentifier().get(posExtId);
    String value = identifier.getValue();
    String system = identifier.getSystem();
    // PR1.19.1
    assertThat(value).isEqualTo("P98");
    assertThat(system).isEqualTo("urn:id:extID");
    // Identifier 2: Visit number from PID-18
    identifier = procedure.getIdentifier().get(posACME);
    value = identifier.getValue();
    system = identifier.getSystem();
    // PID.18.1
    assertThat(value).isEqualTo("78654");
    // PID.18.4
    assertThat(system).isEqualTo("urn:id:ACME");
    CodeableConcept type = identifier.getType();
    DatatypeUtils.checkCommonCodeableConceptAssertions(type, "VN", "Visit number", "http://terminology.hl7.org/CodeSystem/v2-0203", null);
    // Test: MSH.7 and PV1.19
    String procedureMSH = "MSH|^~\\&||Instance1|MCM||200911021022|Security|ADT^A01^ADT_A01|64322|P|2.6|123|456|ER|AL|USA|ASCII|en|2.6|56789^NID^UID|MCM|CDP|^4086::132:2A57:3C28^IPV6|^4086::132:2A57:3C25^IPV6|\n" + "PID|1||000054321^^^MRN|||||||||||||M|CAT|||||N\n" + "PV1||I|6N^1234^A^GENERAL HOSPITAL2|||||||SUR||||||||S|8846511|A|||||||||||||||||||SF|K||||20170215080000\n" + "ROL|5897|UP|AD||20210322133821|20210322133822|10||Hospital|ST||||USA\n" + "PR1|1|ICD10|B45678|Fix break|20210322155008|A|75||V46|80|||32|1|D22|G45|1|G||X|0|0\n";
    procedure = ResourceUtils.getProcedure(ftv, procedureMSH);
    // Expect 2 identifiers
    assertThat(procedure.hasIdentifier()).isTrue();
    assertThat(procedure.getIdentifier()).hasSize(2);
    identifiers = procedure.getIdentifier();
    // Match the three id's to position; we can't depend on an order.
    posExtId = getIdentifierPositionByValue("200911021022", identifiers);
    assertThat(posExtId).isNotSameAs(-1);
    int posVN = getIdentifierPositionByValue("8846511", identifiers);
    assertThat(posVN).isNotSameAs(-1);
    // Identifier 1: PR1
    identifier = procedure.getIdentifier().get(posExtId);
    value = identifier.getValue();
    system = identifier.getSystem();
    // MSH.7
    assertThat(value).isEqualTo("200911021022");
    assertThat(system).isEqualTo("urn:id:extID");
    // Identifier 2: Visit number from PV1-19
    identifier = procedure.getIdentifier().get(posVN);
    String valueOBR = identifier.getValue();
    system = identifier.getSystem();
    // PV1.19.1
    assertThat(valueOBR).isEqualTo("8846511");
    // No System PV1.19.2 DNE
    assertThat(system).isNull();
    type = identifier.getType();
    DatatypeUtils.checkCommonCodeableConceptAssertions(type, "VN", "Visit number", "http://terminology.hl7.org/CodeSystem/v2-0203", null);
}

Example 54 with Identifier

use of org.hl7.fhir.r4b.model.Identifier in project hl7v2-fhir-converter by LinuxForHealth.

the class Hl7IdentifierFHIRConversionTest method serviceRequestIdentifierTest5.

// NOTE: ORU_RO1 records do not create the ServiceRequest directly.  They create a DiagnosticReport and it creates the ServiceRequest.
// This test makes sure the specification for ORU_RO1.DiagnosticReport is specifying PID and PV1 correctly in AdditionalSegments.
@Test
void serviceRequestIdentifierTest5() {
    // Test 3:
    // - MSH.7 as the visit number
    // - filler from ORC
    // - placer from ORC
    String serviceRequest = "MSH|^~\\&|||||20180924152907|34001|ORU^R01^ORU_R01|213|T|2.6|||||||||||\n" + // PID.18 is empty so MSH.7 with be used as backup identifier visit number
    "PID|||1234^^^^MR||DOE^JANE^|||F||||||||||||||||||||||\n" + // PV1.19 is empty so MSH.7 with be used as backup identifier visit number
    "PV1|1|E|||||||||||||||||||||||||||||||||||||||||||\n" + // 1. ORC.3 is used as Filler because it has priority over OBR.3
    "ORC|RE|222298|222299|ML18267-C00001^Beaker||||||||||||||||||||||||||||\n" + // 11. OBR.3 ignored as Filler
    "OBR|1|||83036E^HEMOGLOBIN A1C^PACSEAP^^^^^^HEMOGLOBIN A1C|||||||||||||||||||||||||||||||||||||||||||\n";
    ServiceRequest serviceReq = ResourceUtils.getServiceRequest(ftv, serviceRequest);
    // Expect 3 identifiers
    assertThat(serviceReq.hasIdentifier()).isTrue();
    assertThat(serviceReq.getIdentifier()).hasSize(3);
    // Expect 3 identifiers
    assertThat(serviceReq.hasIdentifier()).isTrue();
    assertThat(serviceReq.getIdentifier()).hasSize(3);
    List<Identifier> identifiers = serviceReq.getIdentifier();
    // Match the three id's to position; we can't depend on an order.
    int posVN = getIdentifierPositionByValue("20180924152907", identifiers);
    assertThat(posVN).isNotSameAs(-1);
    int posFILLER = getIdentifierPositionByValue("222299", identifiers);
    assertThat(posFILLER).isNotSameAs(-1);
    int posPLACER = getIdentifierPositionByValue("222298", identifiers);
    assertThat(posPLACER).isNotSameAs(-1);
    // Identifier 1: visit number should be set by MSH.7
    Identifier identifier = serviceReq.getIdentifier().get(posVN);
    String value = identifier.getValue();
    String system = identifier.getSystem();
    // MSH.7
    assertThat(value).isEqualTo("20180924152907");
    assertThat(system).isNull();
    CodeableConcept type = identifier.getType();
    DatatypeUtils.checkCommonCodeableConceptAssertions(type, "VN", "Visit number", "http://terminology.hl7.org/CodeSystem/v2-0203", null);
    // Identifier 2: filler
    identifier = serviceReq.getIdentifier().get(posFILLER);
    value = identifier.getValue();
    system = identifier.getSystem();
    // ORC.3
    assertThat(value).isEqualTo("222299");
    assertThat(system).isNull();
    type = identifier.getType();
    DatatypeUtils.checkCommonCodeableConceptAssertions(type, "FILL", "Filler Identifier", "http://terminology.hl7.org/CodeSystem/v2-0203", null);
    // Identifier 3: placer
    identifier = serviceReq.getIdentifier().get(posPLACER);
    value = identifier.getValue();
    system = identifier.getSystem();
    // ORC.2
    assertThat(value).isEqualTo("222298");
    assertThat(system).isNull();
    type = identifier.getType();
    DatatypeUtils.checkCommonCodeableConceptAssertions(type, "PLAC", "Placer Identifier", "http://terminology.hl7.org/CodeSystem/v2-0203", null);
}

Example 55 with Identifier

use of org.hl7.fhir.r4b.model.Identifier in project hl7v2-fhir-converter by LinuxForHealth.

the class Hl7MedicationRequestFHIRConversionTest method testMedicationRequestCategoryRequesterAndDispenseRequest.

@Test
void testMedicationRequestCategoryRequesterAndDispenseRequest() {
    String hl7message = "MSH|^~\\&||||||S1|RDE^O11||T|2.6|||||||||\n" + "PID|||1234^^^^MR||DOE^JANE^|||F||||||||||||||||||||||\n" + // ORC.29 to category
    "ORC|NW|||||||||||3122^PROVIDER^ORDERING^^^DR|||20190606193536||||||||||||||I\n" + // RXE.13 empty so ORC.12 takes priority
    "RXE|^Q24H&0600^^20210330144208^^ROU|DUONEB3INH^3 ML PLAS CONT : IPRATROPIUM-ALBUTEROL 0.5-2.5 (3) MG/3ML IN SOLN^ADS|3||mL|47||||||||||||||||||||||||||||||||||\n";
    List<BundleEntryComponent> e = ResourceUtils.createFHIRBundleFromHL7MessageReturnEntryList(ftv, hl7message);
    List<Resource> medicationRequestList = ResourceUtils.getResourceList(e, ResourceType.MedicationRequest);
    assertThat(medicationRequestList).hasSize(1);
    MedicationRequest medicationRequest = ResourceUtils.getResourceMedicationRequest(medicationRequestList.get(0), ResourceUtils.context);
    // requester comes from ORC.12 which is the back up value for RXE.13
    String requesterRef = medicationRequest.getRequester().getReference();
    Practitioner practBundle = ResourceUtils.getSpecificPractitionerFromBundleEntriesList(e, requesterRef);
    Identifier practitionerIdentifier = practBundle.getIdentifierFirstRep();
    HumanName practName = practBundle.getNameFirstRep();
    // ORC.12.1
    assertThat(practitionerIdentifier.getValue()).isEqualTo("3122");
    // ORC.12.9
    assertThat(practitionerIdentifier.getSystem()).isNull();
    // ORC.12.2
    assertThat(practName.getFamily()).isEqualTo("PROVIDER");
    // ORC.12.3
    assertThat(practName.getGivenAsSingleString()).isEqualTo("ORDERING");
    // ORC.12.6
    assertThat(practName.getPrefixAsSingleString()).isEqualTo("DR");
    // ORC.12.5
    assertThat(practName.getSuffix()).isEmpty();
    // ORC.12
    assertThat(practName.getText()).isEqualTo("DR ORDERING PROVIDER");
    // category comes from  ORC.29
    assertThat(medicationRequest.getCategory()).hasSize(1);
    DatatypeUtils.checkCommonCodeableConceptAssertions(medicationRequest.getCategory().get(0), "inpatient", "Inpatient", "http://terminology.hl7.org/CodeSystem/medicationrequest-category", null);
    // DispenseRequest.start comes from ORC.15
    assertThat(medicationRequest.getDispenseRequest().hasValidityPeriod()).isTrue();
    assertThat(medicationRequest.getDispenseRequest().getValidityPeriod().getStartElement().toString()).containsPattern("2019-06-06");
}