use of org.hl7.fhir.r4b.model.OperationDefinition in project cqf-ruler by DBCG.
the class CqlExecutionProvider method evaluate.
/**
* Evaluates a CQL expression and returns the results as a Parameters resource.
*
* @param theRequestDetails the {@link RequestDetails RequestDetails}
* @param subject Subject for which the expression will be
* evaluated. This corresponds to the context in
* which the expression will be evaluated and is
* represented as a relative FHIR id (e.g.
* Patient/123), which establishes both the context
* and context value for the evaluation
* @param expression Expression to be evaluated. Note that this is an
* expression of CQL, not the text of a library with
* definition statements.
* @param parameters Any input parameters for the expression.
* {@link Parameters} Parameters defined in this
* input will be made available by name to the CQL
* expression. Parameter types are mapped to CQL as
* specified in the Using CQL section of the CPG
* Implementation guide. If a parameter appears more
* than once in the input Parameters resource, it is
* represented with a List in the input CQL. If a
* parameter has parts, it is represented as a Tuple
* in the input CQL.
* @param library A library to be included. The {@link Library}
* library is resolved by url and made available by
* name within the expression to be evaluated.
* @param useServerData Whether to use data from the server performing the
* evaluation. If this parameter is true (the
* default), then the operation will use data first
* from any bundles provided as parameters (through
* the data and prefetch parameters), second data
* from the server performing the operation, and
* third, data from the dataEndpoint parameter (if
* provided). If this parameter is false, the
* operation will use data first from the bundles
* provided in the data or prefetch parameters, and
* second from the dataEndpoint parameter (if
* provided).
* @param data Data to be made available to the library
* evaluation. This parameter is exclusive with the
* prefetchData parameter (i.e. either provide all
* data as a single bundle, or provide data using
* multiple bundles with prefetch descriptions).
* @param prefetchData ***Not Yet Implemented***
* @param dataEndpoint An {@link Endpoint} endpoint to use to access data
* referenced by retrieve operations in the library.
* If provided, this endpoint is used after the data
* or prefetchData bundles, and the server, if the
* useServerData parameter is true.
* @param contentEndpoint An {@link Endpoint} endpoint to use to access
* content (i.e. libraries) referenced by the
* library. If no content endpoint is supplied, the
* evaluation will attempt to retrieve content from
* the server on which the operation is being
* performed.
* @param terminologyEndpoint An {@link Endpoint} endpoint to use to access
* terminology (i.e. valuesets, codesystems, and
* membership testing) referenced by the library. If
* no terminology endpoint is supplied, the
* evaluation will attempt to use the server on which
* the operation is being performed as the
* terminology server.
* @return The result of evaluating the given expression, returned as a FHIR
* type, either a {@link Resource} resource, or a FHIR-defined type
* corresponding to the CQL return type, as defined in the Using CQL
* section of the CPG Implementation guide. If the result is a List of
* resources, the result will be a {@link Bundle} Bundle . If the result
* is a CQL system-defined or FHIR-defined type, the result is returned
* as a {@link Parameters} Parameters resource
*/
@Operation(name = "$cql")
@Description(shortDefinition = "$cql", value = "Evaluates a CQL expression and returns the results as a Parameters resource. Defined: http://build.fhir.org/ig/HL7/cqf-recommendations/OperationDefinition-cpg-cql.html", example = "$cql?expression=5*5")
public Parameters evaluate(RequestDetails theRequestDetails, @OperationParam(name = "subject", max = 1) String subject, @OperationParam(name = "expression", min = 1, max = 1) String expression, @OperationParam(name = "parameters", max = 1) Parameters parameters, @OperationParam(name = "library") List<Parameters> library, @OperationParam(name = "useServerData", max = 1) BooleanType useServerData, @OperationParam(name = "data", max = 1) Bundle data, @OperationParam(name = "prefetchData") List<Parameters> prefetchData, @OperationParam(name = "dataEndpoint", max = 1) Endpoint dataEndpoint, @OperationParam(name = "contentEndpoint", max = 1) Endpoint contentEndpoint, @OperationParam(name = "terminologyEndpoint", max = 1) Endpoint terminologyEndpoint) {
if (prefetchData != null) {
throw new NotImplementedException("prefetchData is not yet supported.");
}
if (useServerData == null) {
useServerData = new BooleanType(true);
}
List<LibraryParameter> libraryParameters = new ArrayList<>();
if (library != null) {
for (Parameters libraryParameter : library) {
CanonicalType url = null;
String name = null;
for (ParametersParameterComponent param : libraryParameter.getParameter()) {
switch(param.getName()) {
case "url":
url = ((CanonicalType) param.getValue());
break;
case "name":
name = ((StringType) param.getValue()).asStringValue();
break;
default:
throw new IllegalArgumentException("Only url and name parts are allowed for Parameter: library");
}
}
if (url == null) {
throw new IllegalArgumentException("If library parameter must provide a url parameter part.");
}
libraryParameters.add(new LibraryParameter().withUrl(url).withName(name));
}
// Remove LocalLibrary from cache first...
}
VersionedIdentifier localLibraryIdentifier = new VersionedIdentifier().withId("LocalLibrary").withVersion("1.0.0");
globalLibraryCache.remove(localLibraryIdentifier);
CqlEngine engine = setupEngine(localLibraryIdentifier, expression, libraryParameters, subject, parameters, contentEndpoint, dataEndpoint, terminologyEndpoint, data, useServerData.booleanValue(), theRequestDetails);
Map<String, Object> resolvedParameters = new HashMap<>();
if (parameters != null) {
for (Parameters.ParametersParameterComponent pc : parameters.getParameter()) {
resolvedParameters.put(pc.getName(), pc.getValue());
}
}
String contextType = subject != null ? subject.substring(0, subject.lastIndexOf("/") - 1) : null;
String subjectId = subject != null ? subject.substring(0, subject.lastIndexOf("/") - 1) : null;
EvaluationResult evalResult = engine.evaluate(localLibraryIdentifier, null, Pair.of(contextType != null ? contextType : "Unspecified", subjectId == null ? "null" : subject), resolvedParameters, this.getDebugMap());
if (evalResult != null && evalResult.expressionResults != null) {
if (evalResult.expressionResults.size() > 1) {
logger.debug("Evaluation resulted in more than one expression result. ");
}
Parameters result = new Parameters();
resolveResult(theRequestDetails, evalResult, result);
return result;
}
return null;
}
use of org.hl7.fhir.r4b.model.OperationDefinition in project cqf-ruler by DBCG.
the class ReportProvider method report.
/**
* Implements the <a href=
* "https://build.fhir.org/ig/HL7/davinci-ra/OperationDefinition-report.html">$report</a>
* operation found in the
* <a href="https://build.fhir.org/ig/HL7/davinci-ra/index.html">Da Vinci Risk
* Adjustment IG</a>.
*
* @param requestDetails metadata about the current request being processed.
* Generally auto-populated by the HAPI FHIR server
* framework.
* @param periodStart the start of the clinical evaluation period
* @param periodEnd the end of the clinical evaluation period
* @param subject a Patient or Patient Group
* @return a Parameters with Bundles of MeasureReports and evaluatedResource
* Resources
*/
@Description(shortDefinition = "$report", value = "Implements the <a href=\"https://build.fhir.org/ig/HL7/davinci-ra/OperationDefinition-report.html\">$report</a> operation found in the <a href=\"https://build.fhir.org/ig/HL7/davinci-ra/index.html\">Da Vinci Risk Adjustment IG</a>.")
@Operation(name = "$report", idempotent = true, type = MeasureReport.class)
public Parameters report(RequestDetails requestDetails, @OperationParam(name = "periodStart", min = 1, max = 1) String periodStart, @OperationParam(name = "periodEnd", min = 1, max = 1) String periodEnd, @OperationParam(name = "subject", min = 1, max = 1) String subject) throws FHIRException {
validateParameters(periodStart, periodEnd, subject);
Parameters result = newResource(Parameters.class, subject.replace("/", "-") + "-report");
Date periodStartDate = Operations.resolveRequestDate(periodStart, true);
Date periodEndDate = Operations.resolveRequestDate(periodEnd, false);
Period period = new Period().setStart(periodStartDate).setEnd(periodEndDate);
List<Patient> patients = getPatientListFromSubject(subject);
(patients).forEach(patient -> {
Parameters.ParametersParameterComponent patientParameter = patientReport(patient, period, requestDetails.getFhirServerBase());
result.addParameter(patientParameter);
});
return result;
}
use of org.hl7.fhir.r4b.model.OperationDefinition in project org.hl7.fhir.core by hapifhir.
the class PackageMaintainer method check.
private void check(String ver) throws IOException {
System.out.println("Check " + ver);
List<String> allIds = listResources(Utilities.path(PATH, "hl7.fhir." + ver + ".examples", "package"));
List<String> coreIds = listResources(Utilities.path(PATH, "hl7.fhir." + ver + ".core", "package"));
for (String s : coreIds) {
if (!allIds.contains(s)) {
System.out.println("Core contains " + s + " but allIds doesn't");
}
}
for (String s : allIds) {
if (!coreIds.contains(s)) {
String c = s.substring(0, s.indexOf("-"));
if (Utilities.existsInList(c, "CodeSystem", "ValueSet", "ConceptMap", "StructureDefinition", "StructureMap", "NamingSystem", "SearchParameter", "OperationDefinition", "CapabilityStatement", "Conformance"))
System.out.println("Examples contains " + s + " but core doesn't");
}
}
strip(new File(Utilities.path(PATH, "hl7.fhir." + ver + ".core", "package")));
strip(new File(Utilities.path(PATH, "hl7.fhir." + ver + ".expansions", "package")));
if (!ver.equals("r2b"))
strip(new File(Utilities.path(PATH, "hl7.fhir." + ver + ".elements", "package")));
}
use of org.hl7.fhir.r4b.model.OperationDefinition in project org.hl7.fhir.core by hapifhir.
the class RdfParser method composeOperationDefinitionOperationDefinitionParameterBindingComponent.
protected void composeOperationDefinitionOperationDefinitionParameterBindingComponent(Complex parent, String parentType, String name, OperationDefinition.OperationDefinitionParameterBindingComponent element, int index) {
if (element == null)
return;
Complex t;
if (Utilities.noString(parentType))
t = parent;
else {
t = parent.predicate("fhir:" + parentType + '.' + name);
}
composeBackboneElement(t, "binding", name, element, index);
if (element.hasStrengthElement())
composeEnum(t, "OperationDefinition", "strength", element.getStrengthElement(), -1);
if (element.hasValueSet())
composeType(t, "OperationDefinition", "valueSet", element.getValueSet(), -1);
}
use of org.hl7.fhir.r4b.model.OperationDefinition in project org.hl7.fhir.core by hapifhir.
the class RdfParser method composeOperationDefinitionOperationDefinitionParameterComponent.
protected void composeOperationDefinitionOperationDefinitionParameterComponent(Complex parent, String parentType, String name, OperationDefinition.OperationDefinitionParameterComponent element, int index) {
if (element == null)
return;
Complex t;
if (Utilities.noString(parentType))
t = parent;
else {
t = parent.predicate("fhir:" + parentType + '.' + name);
}
composeBackboneElement(t, "parameter", name, element, index);
if (element.hasNameElement())
composeCode(t, "OperationDefinition", "name", element.getNameElement(), -1);
if (element.hasUseElement())
composeEnum(t, "OperationDefinition", "use", element.getUseElement(), -1);
if (element.hasMinElement())
composeInteger(t, "OperationDefinition", "min", element.getMinElement(), -1);
if (element.hasMaxElement())
composeString(t, "OperationDefinition", "max", element.getMaxElement(), -1);
if (element.hasDocumentationElement())
composeString(t, "OperationDefinition", "documentation", element.getDocumentationElement(), -1);
if (element.hasTypeElement())
composeCode(t, "OperationDefinition", "type", element.getTypeElement(), -1);
if (element.hasSearchTypeElement())
composeEnum(t, "OperationDefinition", "searchType", element.getSearchTypeElement(), -1);
if (element.hasProfile())
composeReference(t, "OperationDefinition", "profile", element.getProfile(), -1);
if (element.hasBinding())
composeOperationDefinitionOperationDefinitionParameterBindingComponent(t, "OperationDefinition", "binding", element.getBinding(), -1);
for (int i = 0; i < element.getPart().size(); i++) composeOperationDefinitionOperationDefinitionParameterComponent(t, "OperationDefinition", "part", element.getPart().get(i), i);
}
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