use of org.hl7.fhir.r4b.model.OperationDefinition in project kindling by HL7.
the class SpreadSheetCreator method exlist.
private String exlist(OperationDefinition opd, boolean isResponse, String lcode) {
sortExtensions(opd);
List<String> tl = new ArrayList<>();
for (Extension ext : opd.getExtensionsByUrl(BuildExtensions.EXT_OP_EXAMPLE)) {
String list = ext.getExtensionString(BuildExtensions.EXT_OP_EXAMPLE_LIST);
String resp = ext.getExtensionString(BuildExtensions.EXT_OP_EXAMPLE_RESPONSE);
if (lcode.equals(list) && ("true".equals(resp)) == isResponse) {
tl.add(ext.getExtensionString(BuildExtensions.EXT_OP_EXAMPLE_CONTENT));
}
}
return String.join(" | ", tl);
}
use of org.hl7.fhir.r4b.model.OperationDefinition in project kindling by HL7.
the class SpreadSheetCreator method addOperation.
private int addOperation(XSSFSheet sheet, XSSFSheet bindings, OperationDefinition opd, int rowCount) {
Row row = sheet.createRow(rowCount++);
int columnCount = 0;
addCell(opd.getCode(), row, columnCount++);
addCell(use(opd), row, columnCount++);
addCell("", row, columnCount++);
addCell(type(opd), row, columnCount++);
addCell("", row, columnCount++);
addCell(opd.present(), row, columnCount++);
addCell(opd.getDescription(), row, columnCount++);
addCell(opd.getComment(), row, columnCount++);
addCell(ext(opd, BuildExtensions.EXT_FOOTER), row, columnCount++);
addCell(ext(opd, BuildExtensions.EXT_FOOTER2), row, columnCount++);
addCell(exlist(opd, false, "1"), row, columnCount++);
addCell(exlist(opd, true, "1"), row, columnCount++);
addCell(exlist(opd, false, "2"), row, columnCount++);
addCell(exlist(opd, true, "2"), row, columnCount++);
addCell(status(opd), row, columnCount++);
addCell(ext(opd, BuildExtensions.EXT_COMMITTEE_NOTES), row, columnCount++);
for (OperationDefinitionParameterComponent param : opd.getParameter()) {
rowCount = addOpParam(sheet, bindings, opd.getCode(), param, rowCount);
}
return rowCount;
}
use of org.hl7.fhir.r4b.model.OperationDefinition in project kindling by HL7.
the class ResourceParser method parseED.
private void parseED(ProfileUtilities pu, ElementDefn ed, ElementDefinition focus, StructureDefinition sd, String parentName) throws IOException {
ed.setMinCardinality(focus.getMin());
ed.setMaxCardinality("*".equals(focus.getMax()) ? Integer.MAX_VALUE : Integer.parseInt(focus.getMax()));
ed.setIsModifier(focus.getIsModifier());
ed.setModifierReason(focus.getIsModifierReason());
ed.setMustSupport(focus.getMustSupport());
ed.setSummaryItem(focus.getIsSummary());
ed.setRegex(ToolingExtensions.readStringExtension(focus, ToolingExtensions.EXT_REGEX));
ed.setXmlAttribute(focus.hasRepresentation(PropertyRepresentation.XMLATTR));
if (ToolingExtensions.hasExtension(focus, BuildExtensions.EXT_UML_DIR)) {
ed.setUmlDir(ToolingExtensions.readStringExtension(focus, BuildExtensions.EXT_UML_DIR));
}
if (ToolingExtensions.hasExtension(focus, BuildExtensions.EXT_UML_BREAK)) {
ed.setUmlBreak(ToolingExtensions.readBoolExtension(focus, BuildExtensions.EXT_UML_BREAK));
}
if (BuildExtensions.hasExtension(focus, BuildExtensions.EXT_SVG)) {
String svg = BuildExtensions.readStringExtension(focus, BuildExtensions.EXT_SVG);
if (svg.contains("w=")) {
ed.setSvgWidth(Integer.parseInt(svg.substring(svg.indexOf("w=") + 2)));
svg = svg.substring(0, svg.indexOf(";"));
}
ed.setSvgLeft(Integer.parseInt(svg.substring(0, svg.indexOf(","))));
ed.setSvgTop(Integer.parseInt(svg.substring(svg.indexOf(",") + 1)));
}
ed.setName(tail(focus.getPath()));
ed.setShortDefn(focus.getShort());
ed.setDefinition(focus.getDefinition());
ed.setRequirements(focus.getRequirements());
ed.setComments(focus.getComment());
if (BuildExtensions.hasExtension(focus, BuildExtensions.EXT_TODO)) {
ed.setTodo(BuildExtensions.readStringExtension(focus, BuildExtensions.EXT_TODO));
}
if (BuildExtensions.hasExtension(focus, BuildExtensions.EXT_COMMITTEE_NOTES)) {
ed.setCommitteeNotes(BuildExtensions.readStringExtension(focus, BuildExtensions.EXT_COMMITTEE_NOTES));
}
if (BuildExtensions.hasExtension(focus, BuildExtensions.EXT_HINT)) {
ed.setDisplayHint(BuildExtensions.readStringExtension(focus, BuildExtensions.EXT_HINT));
}
if (focus.hasExtension(BuildExtensions.EXT_NO_BINDING)) {
ed.setNoBindingAllowed(focus.getExtensionString(BuildExtensions.EXT_NO_BINDING).equals("true"));
}
for (StringType t : focus.getAlias()) {
ed.getAliases().add(t.getValue());
}
if (focus.hasMaxLength()) {
ed.setMaxLength(Integer.toString(focus.getMaxLength()));
}
ed.setExample(focus.getExampleFirstRep().getValue());
ed.setMeaningWhenMissing(focus.getMeaningWhenMissing());
if (ToolingExtensions.hasExtension(focus, BuildExtensions.EXT_TRANSLATABLE)) {
ed.setTranslatable(ToolingExtensions.readBoolExtension(focus, BuildExtensions.EXT_TRANSLATABLE));
}
ed.setOrderMeaning(focus.getOrderMeaning());
if (BuildExtensions.hasExtension(focus, BuildExtensions.EXT_STANDARDS_STATUS)) {
ed.setStandardsStatus(StandardsStatus.fromCode(BuildExtensions.readStringExtension(focus, BuildExtensions.EXT_STANDARDS_STATUS)));
}
if (BuildExtensions.hasExtension(focus, BuildExtensions.EXT_NORMATIVE_VERSION)) {
ed.setNormativeVersion(BuildExtensions.readStringExtension(focus, BuildExtensions.EXT_NORMATIVE_VERSION));
}
for (ElementDefinitionConstraintComponent cst : focus.getConstraint()) {
Invariant inv = new Invariant();
inv.setContext(focus.getPath());
inv.setEnglish(cst.getHuman());
if (cst.hasExtension(BuildExtensions.EXT_OCL)) {
inv.setOcl(cst.getExtensionString(BuildExtensions.EXT_OCL));
}
inv.setXpath(cst.getXpath());
inv.setId(cst.getKey());
if (cst.hasExtension(BuildExtensions.EXT_FIXED_NAME)) {
inv.setFixedName(cst.getExtensionString(BuildExtensions.EXT_FIXED_NAME));
}
inv.setSeverity(cst.getSeverity().toCode());
if (cst.hasExtension(BuildExtensions.EXT_BEST_PRACTICE)) {
inv.setSeverity("best-practice");
}
if (cst.hasExtension(BuildExtensions.EXT_TURTLE)) {
inv.setTurtle(cst.getExtensionString(BuildExtensions.EXT_TURTLE));
}
inv.setRequirements(cst.getRequirements());
inv.setExpression(cst.getExpression());
if (cst.hasExtension(BuildExtensions.EXT_BEST_PRACTICE_EXPLANATION)) {
inv.setExplanation(cst.getExtensionString(BuildExtensions.EXT_BEST_PRACTICE_EXPLANATION));
}
ed.getInvariants().put(inv.getId(), inv);
invariants.put(inv.getId(), inv);
}
for (IdType cnd : focus.getCondition()) {
Invariant inv = invariants.get(cnd.primitiveValue());
if (inv == null) {
System.out.println("Unable to find invariant " + cnd.primitiveValue());
} else {
ed.getStatedInvariants().add(inv);
}
}
for (ElementDefinitionMappingComponent map : focus.getMapping()) {
String uri = getMappingUri(sd, map.getIdentity());
if ("http://hl7.org/fhir/fivews".equals(uri)) {
ed.setW5(reverseW5(map.getMap()));
} else {
ed.getMappings().put(uri, map.getMap());
}
}
if (focus.hasContentReference()) {
ed.getTypes().add(new TypeRef("@" + focus.getContentReference().substring(1)));
} else {
for (TypeRefComponent tr : focus.getType()) {
if (!Utilities.existsInList(tr.getCode(), "Element", "BackboneElement")) {
TypeRef t = new TypeRef();
ed.getTypes().add(t);
if (tr.hasExtension("http://hl7.org/fhir/StructureDefinition/structuredefinition-fhir-type")) {
t.setName(tr.getExtensionString("http://hl7.org/fhir/StructureDefinition/structuredefinition-fhir-type"));
} else {
t.setName(tr.getCode());
}
if (ToolingExtensions.hasExtension(tr, BuildExtensions.EXT_HIERARCHY)) {
ed.setHierarchy(ToolingExtensions.readBoolExtension(tr, BuildExtensions.EXT_HIERARCHY));
}
for (CanonicalType u : tr.getProfile()) {
t.setProfile(u.getValue().replace("http://hl7.org/fhir/StructureDefinition/", ""));
}
for (CanonicalType u : tr.getTargetProfile()) {
String s = u.getValue().replace("http://hl7.org/fhir/StructureDefinition/", "");
if ("Resource".equals(s)) {
t.getParams().add("Any");
} else {
t.getParams().add(s);
}
}
if (t.getName().equals("Quantity") && "SimpleQuantity".equals(t.getProfile())) {
t.setName("SimpleQuantity");
t.setProfile(null);
}
if ("Resource".equals(t.getProfile())) {
t.setProfile("Any");
}
if (t.getParams().toString().equals("[ActivityDefinition, EventDefinition, EvidenceVariable, Measure, OperationDefinition, PlanDefinition, Questionnaire, SubscriptionTopic]")) {
t.getParams().clear();
t.getParams().add("Definition");
}
}
}
if (ed.getTypes().size() == STAR_TYPES_COUNT) {
ed.getTypes().clear();
ed.getTypes().add(new TypeRef("*"));
}
}
String name = parentName + Utilities.capitalize(ed.getName());
if (focus.hasExtension("http://hl7.org/fhir/StructureDefinition/structuredefinition-explicit-type-name")) {
ed.setStatedType(focus.getExtensionString("http://hl7.org/fhir/StructureDefinition/structuredefinition-explicit-type-name"));
ed.setDeclaredTypeName(ed.getStatedType());
} else if (ed.getTypes().isEmpty() && !focus.hasContentReference()) {
ed.setDeclaredTypeName(name + "Component");
}
if (focus.hasBinding()) {
ed.setBinding(parseBinding(focus.getBinding()));
}
for (ElementDefinition child : pu.getChildList(sd, focus, true, false)) {
ElementDefn c = new ElementDefn();
ed.getElements().add(c);
parseED(pu, c, child, sd, name);
}
// todo:
// private ElementDefinition derivation;
}
use of org.hl7.fhir.r4b.model.OperationDefinition in project kindling by HL7.
the class Regenerator method generateOperation.
private void generateOperation(String root, ResourceDefn r, Operation op) throws IOException {
OperationDefinition opd = op.getResource().copy();
opd.setId(r.getName() + "-" + op.getName());
opd.setUrl("http://hl7.org/fhir/build/OperationDefinition/" + opd.getId());
if (!Utilities.noString(op.getFooter())) {
opd.addExtension(BuildExtensions.EXT_FOOTER, new MarkdownType(op.getFooter()));
}
if (!Utilities.noString(op.getFooter2())) {
opd.addExtension(BuildExtensions.EXT_FOOTER2, new MarkdownType(op.getFooter2()));
}
for (OperationExample opex : op.getExamples()) {
Extension ex = new Extension(BuildExtensions.EXT_OP_EXAMPLE);
if (!Utilities.noString(opex.getContent())) {
ex.addExtension(BuildExtensions.EXT_OP_EXAMPLE_CONTENT, new StringType(opex.getContent()));
}
if (!Utilities.noString(opex.getComment())) {
ex.addExtension(BuildExtensions.EXT_OP_EXAMPLE_COMMENT, new StringType(opex.getComment()));
}
ex.addExtension(BuildExtensions.EXT_OP_EXAMPLE_RESPONSE, new BooleanType(opex.isResponse()));
ex.addExtension(BuildExtensions.EXT_OP_EXAMPLE_LIST, new IntegerType(1));
opd.addExtension(ex);
}
for (OperationExample opex : op.getExamples2()) {
Extension ex = new Extension(BuildExtensions.EXT_OP_EXAMPLE);
if (!Utilities.noString(opex.getContent())) {
ex.addExtension(BuildExtensions.EXT_OP_EXAMPLE_CONTENT, new StringType(opex.getContent()));
}
if (!Utilities.noString(opex.getComment())) {
ex.addExtension(BuildExtensions.EXT_OP_EXAMPLE_COMMENT, new StringType(opex.getComment()));
}
ex.addExtension(BuildExtensions.EXT_OP_EXAMPLE_RESPONSE, new BooleanType(opex.isResponse()));
ex.addExtension(BuildExtensions.EXT_OP_EXAMPLE_LIST, new IntegerType(2));
opd.addExtension(ex);
}
File fn = new File(Utilities.path(root, opd.fhirType().toLowerCase() + "-" + opd.getId() + ".gen.xml"));
new XmlParser().setOutputStyle(OutputStyle.PRETTY).compose(new FileOutputStream(fn), opd);
fn.setLastModified(r.getTimestamp());
}
use of org.hl7.fhir.r4b.model.OperationDefinition in project cqf-ruler by DBCG.
the class CqlExecutionProvider method evaluate.
/**
* Evaluates a CQL expression and returns the results as a Parameters resource.
*
* @param theRequestDetails the {@link RequestDetails RequestDetails}
* @param subject ***Only Patient is supported as of now*** Subject
* for which the expression will be
* evaluated. This corresponds to the context in
* which the expression will be evaluated and is
* represented as a relative FHIR id (e.g.
* Patient/123), which establishes both the context
* and context value for the evaluation
* @param expression Expression to be evaluated. Note that this is an
* expression of CQL, not the text of a library with
* definition statements.
* @param parameters Any input parameters for the expression.
* {@link Parameters} Parameters defined in this
* input will be made available by name to the CQL
* expression. Parameter types are mapped to CQL as
* specified in the Using CQL section of the CPG
* Implementation guide. If a parameter appears more
* than once in the input Parameters resource, it is
* represented with a List in the input CQL. If a
* parameter has parts, it is represented as a Tuple
* in the input CQL.
* @param library A library to be included. The {@link Library}
* library is resolved by url and made available by
* name within the expression to be evaluated.
* @param useServerData Whether to use data from the server performing the
* evaluation. If this parameter is true (the
* default), then the operation will use data first
* from any bundles provided as parameters (through
* the data and prefetch parameters), second data
* from the server performing the operation, and
* third, data from the dataEndpoint parameter (if
* provided). If this parameter is false, the
* operation will use data first from the bundles
* provided in the data or prefetch parameters, and
* second from the dataEndpoint parameter (if
* provided).
* @param data Data to be made available to the library
* evaluation. This parameter is exclusive with the
* prefetchData parameter (i.e. either provide all
* data as a single bundle, or provide data using
* multiple bundles with prefetch descriptions).
* @param prefetchData ***Not Yet Implemented***
* @param dataEndpoint An {@link Endpoint} endpoint to use to access data
* referenced by retrieve operations in the library.
* If provided, this endpoint is used after the data
* or prefetchData bundles, and the server, if the
* useServerData parameter is true.
* @param contentEndpoint An {@link Endpoint} endpoint to use to access
* content (i.e. libraries) referenced by the
* library. If no content endpoint is supplied, the
* evaluation will attempt to retrieve content from
* the server on which the operation is being
* performed.
* @param terminologyEndpoint An {@link Endpoint} endpoint to use to access
* terminology (i.e. valuesets, codesystems, and
* membership testing) referenced by the library. If
* no terminology endpoint is supplied, the
* evaluation will attempt to use the server on which
* the operation is being performed as the
* terminology server.
* @return The result of evaluating the given expression, returned as a FHIR
* type, either a {@link Resource} resource, or a FHIR-defined type
* corresponding to the CQL return type, as defined in the Using CQL
* section of the CPG Implementation guide. If the result is a List of
* resources, the result will be a {@link Bundle} Bundle . If the result
* is a CQL system-defined or FHIR-defined type, the result is returned
* as a {@link Parameters} Parameters resource
*/
@Operation(name = "$cql")
@Description(shortDefinition = "$cql", value = "Evaluates a CQL expression and returns the results as a Parameters resource. Defined: http://build.fhir.org/ig/HL7/cqf-recommendations/OperationDefinition-cpg-cql.html", example = "$cql?expression=5*5")
public Parameters evaluate(RequestDetails theRequestDetails, @OperationParam(name = "subject", max = 1) String subject, @OperationParam(name = "expression", min = 1, max = 1) String expression, @OperationParam(name = "parameters", max = 1) Parameters parameters, @OperationParam(name = "library") List<Parameters> library, @OperationParam(name = "useServerData", max = 1) BooleanType useServerData, @OperationParam(name = "data", max = 1) Bundle data, @OperationParam(name = "prefetchData") List<Parameters> prefetchData, @OperationParam(name = "dataEndpoint", max = 1) Endpoint dataEndpoint, @OperationParam(name = "contentEndpoint", max = 1) Endpoint contentEndpoint, @OperationParam(name = "terminologyEndpoint", max = 1) Endpoint terminologyEndpoint) {
if (prefetchData != null) {
throw new NotImplementedException("prefetchData is not yet supported.");
}
if (useServerData == null) {
useServerData = new BooleanType(true);
}
List<LibraryParameter> libraryParameters = new ArrayList<>();
if (library != null) {
for (Parameters libraryParameter : library) {
String url = null;
String name = null;
for (ParametersParameterComponent param : libraryParameter.getParameter()) {
switch(param.getName()) {
case "url":
url = ((StringType) param.getValue()).asStringValue();
break;
case "name":
name = ((StringType) param.getValue()).asStringValue();
break;
default:
throw new IllegalArgumentException("Only url and name parts are allowed for Parameter: library");
}
}
if (url == null) {
throw new IllegalArgumentException("If library parameter must provide a url parameter part.");
}
libraryParameters.add(new LibraryParameter().withUrl(url).withName(name));
}
// Remove LocalLibrary from cache first...
}
VersionedIdentifier localLibraryIdentifier = new VersionedIdentifier().withId("LocalLibrary").withVersion("1.0.0");
globalLibraryCache.remove(localLibraryIdentifier);
CqlEngine engine = setupEngine(localLibraryIdentifier, expression, libraryParameters, subject, parameters, contentEndpoint, dataEndpoint, terminologyEndpoint, data, useServerData.booleanValue(), theRequestDetails);
Map<String, Object> resolvedParameters = new HashMap<String, Object>();
if (parameters != null) {
for (Parameters.ParametersParameterComponent pc : parameters.getParameter()) {
resolvedParameters.put(pc.getName(), pc.getValue());
}
}
String contextType = subject != null ? subject.substring(0, subject.lastIndexOf("/") - 1) : null;
String subjectId = subject != null ? subject.substring(0, subject.lastIndexOf("/") - 1) : null;
EvaluationResult evalResult = engine.evaluate(localLibraryIdentifier, null, Pair.of(contextType != null ? contextType : "Unspecified", subjectId == null ? "null" : subject), resolvedParameters, this.getDebugMap());
if (evalResult != null && evalResult.expressionResults != null) {
if (evalResult.expressionResults.size() > 1) {
logger.debug("Evaluation resulted in more than one expression result. ");
}
Parameters result = new Parameters();
resolveResult(theRequestDetails, evalResult, result);
return result;
}
return null;
}
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