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Example 46 with Property

use of org.hl7.fhir.r4b.model.Property in project org.hl7.fhir.core by hapifhir.

the class RdfParser method composeCodeSystemConceptPropertyComponent.

protected void composeCodeSystemConceptPropertyComponent(Complex parent, String parentType, String name, CodeSystem.ConceptPropertyComponent element, int index) {
    if (element == null)
        return;
    Complex t;
    if (Utilities.noString(parentType))
        t = parent;
    else {
        t = parent.predicate("fhir:" + parentType + '.' + name);
    }
    composeBackboneElement(t, "property", name, element, index);
    if (element.hasCodeElement())
        composeCode(t, "CodeSystem", "code", element.getCodeElement(), -1);
    if (element.hasValue())
        composeType(t, "CodeSystem", "value", element.getValue(), -1);
}
Also used : Complex(org.hl7.fhir.r4.utils.formats.Turtle.Complex)

Example 47 with Property

use of org.hl7.fhir.r4b.model.Property in project org.hl7.fhir.core by hapifhir.

the class RdfParser method composeCodeSystemPropertyComponent.

protected void composeCodeSystemPropertyComponent(Complex parent, String parentType, String name, CodeSystem.PropertyComponent element, int index) {
    if (element == null)
        return;
    Complex t;
    if (Utilities.noString(parentType))
        t = parent;
    else {
        t = parent.predicate("fhir:" + parentType + '.' + name);
    }
    composeBackboneElement(t, "property", name, element, index);
    if (element.hasCodeElement())
        composeCode(t, "CodeSystem", "code", element.getCodeElement(), -1);
    if (element.hasUriElement())
        composeUri(t, "CodeSystem", "uri", element.getUriElement(), -1);
    if (element.hasDescriptionElement())
        composeString(t, "CodeSystem", "description", element.getDescriptionElement(), -1);
    if (element.hasTypeElement())
        composeEnum(t, "CodeSystem", "type", element.getTypeElement(), -1);
}
Also used : Complex(org.hl7.fhir.r4.utils.formats.Turtle.Complex)

Example 48 with Property

use of org.hl7.fhir.r4b.model.Property in project org.hl7.fhir.core by hapifhir.

the class Element method setProperty.

@Override
public Base setProperty(int hash, String name, Base value) throws FHIRException {
    if ("xhtml".equals(getType()) && (hash == "value".hashCode())) {
        this.xhtml = TypeConvertor.castToXhtml(value);
        this.value = TypeConvertor.castToXhtmlString(value);
        return this;
    }
    if (isPrimitive() && (hash == "value".hashCode())) {
        this.value = TypeConvertor.castToString(value).asStringValue();
        return this;
    }
    if (!value.isPrimitive() && !(value instanceof Element)) {
        if (isDataType(value))
            value = convertToElement(property.getChild(name), value);
        else
            throw new FHIRException("Cannot set property " + name + " on " + this.name + " - value is not a primitive type (" + value.fhirType() + ") or an ElementModel type");
    }
    if (children == null)
        children = new ArrayList<Element>();
    Element childForValue = null;
    // look through existing children
    for (Element child : children) {
        if (child.getName().equals(name)) {
            if (!child.isList()) {
                childForValue = child;
                break;
            } else {
                Element ne = new Element(child);
                children.add(ne);
                numberChildren();
                childForValue = ne;
                break;
            }
        }
    }
    int i = 0;
    if (childForValue == null)
        for (Property p : property.getChildProperties(this.name, type)) {
            int t = -1;
            for (int c = 0; c < children.size(); c++) {
                Element e = children.get(c);
                if (p.getName().equals(e.getName()))
                    t = c;
            }
            if (t >= i)
                i = t + 1;
            if (p.getName().equals(name) || p.getName().equals(name + "[x]")) {
                Element ne = new Element(name, p);
                children.add(i, ne);
                childForValue = ne;
                break;
            }
        }
    if (childForValue == null)
        throw new Error("Cannot set property " + name + " on " + this.name);
    else if (value.isPrimitive()) {
        if (childForValue.property.getName().endsWith("[x]"))
            childForValue.name = name + Utilities.capitalize(value.fhirType());
        childForValue.setValue(value.primitiveValue());
    } else {
        Element ve = (Element) value;
        childForValue.type = ve.getType();
        if (childForValue.property.getName().endsWith("[x]"))
            childForValue.name = name + Utilities.capitalize(childForValue.type);
        else if (value.isResource()) {
            if (childForValue.elementProperty == null)
                childForValue.elementProperty = childForValue.property;
            childForValue.property = ve.property;
            childForValue.special = SpecialElement.BUNDLE_ENTRY;
        }
        if (ve.children != null) {
            if (childForValue.children == null)
                childForValue.children = new ArrayList<Element>();
            else
                childForValue.children.clear();
            childForValue.children.addAll(ve.children);
        }
    }
    return childForValue;
}
Also used : ArrayList(java.util.ArrayList) FHIRException(org.hl7.fhir.exceptions.FHIRException)

Example 49 with Property

use of org.hl7.fhir.r4b.model.Property in project org.hl7.fhir.core by hapifhir.

the class ProfileComparer method compareElements.

private void compareElements(ProfileComparison comp, StructuralMatch<ElementDefinitionNode> res, String path, String sliceName, DefinitionNavigator left, DefinitionNavigator right) throws DefinitionException, FHIRFormatError, IOException {
    assert (path != null);
    assert (left != null);
    assert (right != null);
    assert (left.path().equals(right.path()));
    if (session.isDebug()) {
        System.out.println("Compare elements at " + path);
    }
    // not allowed to be different:
    // ruleEqual(comp, res, left.current().getDefaultValue(), right.current().getDefaultValue(), "defaultValue", path);
    // ruleEqual(comp, res, left.current().getMeaningWhenMissingElement(), right.current().getMeaningWhenMissingElement(), "meaningWhenMissing", path);
    // ruleEqual(comp, res, left.current().getIsModifierElement(), right.current().getIsModifierElement(), "isModifier", path); - this check belongs in the core
    // ruleEqual(comp, res, left.current().getIsSummaryElement(), right.current().getIsSummaryElement(), "isSummary", path); - so does this
    // we ignore slicing right now - we're going to clone the root one anyway, and then think about clones
    // simple stuff
    ElementDefinition subset = new ElementDefinition();
    subset.setPath(left.path());
    if (sliceName != null)
        subset.setSliceName(sliceName);
    // can't be bothered even testing this one
    subset.getRepresentation().addAll(left.current().getRepresentation());
    subset.setDefaultValue(left.current().getDefaultValue());
    subset.setMeaningWhenMissing(left.current().getMeaningWhenMissing());
    subset.setIsModifier(left.current().getIsModifier());
    subset.setIsSummary(left.current().getIsSummary());
    // descriptive properties from ElementDefinition - merge them:
    subset.setLabel(mergeText(comp, res, path, "label", left.current().getLabel(), right.current().getLabel(), false));
    subset.setShort(mergeText(comp, res, path, "short", left.current().getShort(), right.current().getShort(), false));
    subset.setDefinition(mergeText(comp, res, path, "definition", left.current().getDefinition(), right.current().getDefinition(), false));
    subset.setComment(mergeText(comp, res, path, "comments", left.current().getComment(), right.current().getComment(), false));
    subset.setRequirements(mergeText(comp, res, path, "requirements", left.current().getRequirements(), right.current().getRequirements(), false));
    subset.getCode().addAll(mergeCodings(left.current().getCode(), right.current().getCode()));
    subset.getAlias().addAll(mergeStrings(left.current().getAlias(), right.current().getAlias()));
    subset.getMapping().addAll(mergeMappings(left.current().getMapping(), right.current().getMapping()));
    // left will win for example
    subset.setExample(left.current().hasExample() ? left.current().getExample() : right.current().getExample());
    if (left.current().getMustSupport() != right.current().getMustSupport()) {
        vm(IssueSeverity.WARNING, "Elements differ in definition for mustSupport: '" + left.current().getMustSupport() + "' vs '" + right.current().getMustSupport() + "'", path, comp.getMessages(), res.getMessages());
    }
    subset.setMustSupport(left.current().getMustSupport() || right.current().getMustSupport());
    ElementDefinition superset = subset.copy();
    // compare and intersect
    int leftMin = left.current().getMin();
    int rightMin = right.current().getMin();
    int leftMax = "*".equals(left.current().getMax()) ? Integer.MAX_VALUE : Integer.parseInt(left.current().getMax());
    int rightMax = "*".equals(right.current().getMax()) ? Integer.MAX_VALUE : Integer.parseInt(right.current().getMax());
    checkMinMax(comp, res, path, leftMin, rightMin, leftMax, rightMax);
    superset.setMin(unionMin(leftMin, rightMin));
    superset.setMax(unionMax(leftMax, rightMax, left.current().getMax(), right.current().getMax()));
    subset.setMin(intersectMin(leftMin, rightMin));
    subset.setMax(intersectMax(leftMax, rightMax, left.current().getMax(), right.current().getMax()));
    superset.getType().addAll(unionTypes(comp, res, path, left.current().getType(), right.current().getType()));
    subset.getType().addAll(intersectTypes(comp, res, subset, path, left.current().getType(), right.current().getType()));
    rule(comp, res, !subset.getType().isEmpty() || (!left.current().hasType() && !right.current().hasType()), path, "Type Mismatch: " + typeCode(left) + " vs " + typeCode(right));
    // <fixed[x]><!-- ?? 0..1 * Value must be exactly this --></fixed[x]>
    // <pattern[x]><!-- ?? 0..1 * Value must have at least these property values --></pattern[x]>
    superset.setMaxLengthElement(unionMaxLength(left.current().getMaxLength(), right.current().getMaxLength()));
    subset.setMaxLengthElement(intersectMaxLength(left.current().getMaxLength(), right.current().getMaxLength()));
    if (left.current().hasBinding() || right.current().hasBinding()) {
        compareBindings(comp, res, subset, superset, path, left.current(), right.current());
    }
    // note these are backwards
    superset.getConstraint().addAll(intersectConstraints(path, left.current().getConstraint(), right.current().getConstraint()));
    subset.getConstraint().addAll(unionConstraints(comp, res, path, left.current().getConstraint(), right.current().getConstraint()));
    comp.getIntersection().getSnapshot().getElement().add(subset);
    comp.getUnion().getSnapshot().getElement().add(superset);
    // add the children
    compareChildren(comp, res, path, left, right);
// 
// // now process the slices
// if (left.current().hasSlicing() || right.current().hasSlicing()) {
// assert sliceName == null;
// if (isExtension(left.path()))
// return compareExtensions(outcome, path, superset, subset, left, right);
// //      return true;
// else {
// ElementDefinitionSlicingComponent slicingL = left.current().getSlicing();
// ElementDefinitionSlicingComponent slicingR = right.current().getSlicing();
// // well, this is tricky. If one is sliced, and the other is not, then in general, the union just ignores the slices, and the intersection is the slices.
// if (left.current().hasSlicing() && !right.current().hasSlicing()) {
// // the super set is done. Any restrictions in the slices are irrelevant to what the super set says, except that we're going sum up the value sets if we can (for documentation purposes) (todo)
// // the minimum set is the slicing specified in the slicer
// subset.setSlicing(slicingL);
// // stick everything from the right to do with the slices to the subset
// copySlices(outcome.subset.getSnapshot().getElement(), left.getStructure().getSnapshot().getElement(), left.slices());
// } else if (!left.current().hasSlicing() && right.current().hasSlicing()) {
// // the super set is done. Any restrictions in the slices are irrelevant to what the super set says, except that we're going sum up the value sets if we can (for documentation purposes) (todo)
// // the minimum set is the slicing specified in the slicer
// subset.setSlicing(slicingR);
// // stick everything from the right to do with the slices to the subset
// copySlices(outcome.subset.getSnapshot().getElement(), right.getStructure().getSnapshot().getElement(), right.slices());
// } else if (isTypeSlicing(slicingL) || isTypeSlicing(slicingR)) {
// superset.getSlicing().setRules(SlicingRules.OPEN).setOrdered(false).addDiscriminator().setType(DiscriminatorType.TYPE).setPath("$this");
// subset.getSlicing().setRules(slicingL.getRules() == SlicingRules.CLOSED || slicingR.getRules() == SlicingRules.CLOSED ? SlicingRules.OPEN : SlicingRules.CLOSED).setOrdered(false).addDiscriminator().setType(DiscriminatorType.TYPE).setPath("$this");
// 
// // the superset is the union of the types
// // the subset is the intersection of them
// List<DefinitionNavigator> handled = new ArrayList<>();
// for (DefinitionNavigator t : left.slices()) {
// DefinitionNavigator r = findMatchingSlice(right.slices(), t);
// if (r == null) {
// copySlice(outcome.superset.getSnapshot().getElement(), left.getStructure().getSnapshot().getElement(), t);
// } else {
// handled.add(r);
// ret = compareElements(outcome, path+":"+t.current().getSliceName(), t, r, t.current().getSliceName()) && ret;
// }
// }
// for (DefinitionNavigator t : right.slices()) {
// if (!handled.contains(t)) {
// copySlice(outcome.superset.getSnapshot().getElement(), right.getStructure().getSnapshot().getElement(), t);
// }
// }
// } else if (slicingMatches(slicingL, slicingR)) {
// // if it's the same, we can try matching the slices - though we might have to give up without getting matches correct
// // there amy be implied consistency we can't reason about
// throw new DefinitionException("Slicing matches but is not handled yet at "+left.current().getId()+": ("+ProfileUtilities.summarizeSlicing(slicingL)+")");
// } else  {
// // if the slicing is different, we can't compare them - or can we?
// throw new DefinitionException("Slicing doesn't match at "+left.current().getId()+": ("+ProfileUtilities.summarizeSlicing(slicingL)+" / "+ProfileUtilities.summarizeSlicing(slicingR)+")");
// }
// }
// // todo: name
// }
// return ret;
// 
// // TODO Auto-generated method stub
// return null;
}
Also used : ElementDefinition(org.hl7.fhir.r4b.model.ElementDefinition)

Example 50 with Property

use of org.hl7.fhir.r4b.model.Property in project org.hl7.fhir.core by hapifhir.

the class JsonParser method parseChildComplexInstance.

private void parseChildComplexInstance(String npath, String fpath, JsonObject object, Element element, Property property, String name, JsonElement e) throws FHIRException {
    if (e instanceof JsonObject) {
        JsonObject child = (JsonObject) e;
        Element n = new Element(name, property).markLocation(line(child), col(child));
        n.setPath(fpath);
        checkObject(child, npath);
        element.getChildren().add(n);
        if (property.isResource())
            parseResource(npath, child, n, property);
        else
            parseChildren(npath, child, n, false);
    } else
        logError(line(e), col(e), npath, IssueType.INVALID, context.formatMessage(I18nConstants.THIS_PROPERTY_MUST_BE__NOT_, (property.isList() ? "an Array" : "an Object"), describe(e), name, npath), IssueSeverity.ERROR);
}
Also used : JsonElement(com.google.gson.JsonElement) SpecialElement(org.hl7.fhir.r4b.elementmodel.Element.SpecialElement) JsonObject(com.google.gson.JsonObject)

Aggregations

ArrayList (java.util.ArrayList)35 FHIRException (org.hl7.fhir.exceptions.FHIRException)35 DefinitionException (org.hl7.fhir.exceptions.DefinitionException)30 JsonElement (com.google.gson.JsonElement)23 FHIRFormatError (org.hl7.fhir.exceptions.FHIRFormatError)21 StructureDefinition (org.hl7.fhir.dstu3.model.StructureDefinition)15 JsonObject (com.google.gson.JsonObject)14 List (java.util.List)14 StructureDefinition (org.hl7.fhir.r4.model.StructureDefinition)14 Complex (org.hl7.fhir.r4.utils.formats.Turtle.Complex)13 StructureDefinition (org.hl7.fhir.r4b.model.StructureDefinition)13 StructureDefinition (org.hl7.fhir.r5.model.StructureDefinition)13 ElementDefinition (org.hl7.fhir.dstu3.model.ElementDefinition)11 HashMap (java.util.HashMap)8 HashSet (java.util.HashSet)8 Collectors (java.util.stream.Collectors)8 ElementDefinition (org.hl7.fhir.r4.model.ElementDefinition)8 SpecialElement (org.hl7.fhir.r4b.elementmodel.Element.SpecialElement)8 NamedElement (org.hl7.fhir.r4b.elementmodel.ParserBase.NamedElement)8 SpecialElement (org.hl7.fhir.r5.elementmodel.Element.SpecialElement)8