Examples with StructureDefinition org.hl7.fhir.r4b.model.StructureDefinition used on opensource projects

Example 36 with StructureDefinition

use of org.hl7.fhir.r4b.model.StructureDefinition in project kindling by HL7.

the class PageProcessor method genImplementationList.

private String genImplementationList(ResourceDefn logical) throws FHIRException {
    String url = logical.getMappingUrl();
    StringBuilder b = new StringBuilder();
    b.append("<table class=\"lines\">\r\n");
    for (String s : sorted(definitions.getResources().keySet())) {
        ResourceDefn rd = definitions.getResourceByName(s);
        StructureDefinition sd = rd.getProfile();
        String code = null;
        for (StructureDefinitionMappingComponent m : sd.getMapping()) {
            if (m.getUri().equals(url))
                code = m.getIdentity();
        }
        if (code != null) {
            if (hasLogicalMapping(sd, logical, code)) {
                b.append(" <tr>\r\n");
                b.append("  <td><a href=\"" + rd.getName().toLowerCase() + ".html\">" + rd.getName() + "</a>&nbsp;&nbsp;&nbsp;&nbsp;</td>\r\n");
                b.append("  <td><a href=\"" + rd.getName().toLowerCase() + "-mappings.html#" + url + "\">Mappings</a>&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;</td>\r\n");
                b.append("  <td><a href=\"" + rd.getName().toLowerCase() + "-examples.html\">Examples</a></td>\r\n");
                b.append(" </tr>\r\n");
            }
        }
    }
    b.append("</table>");
    return b.toString();
}

Example 37 with StructureDefinition

use of org.hl7.fhir.r4b.model.StructureDefinition in project kindling by HL7.

the class PageProcessor method genNSList.

private String genNSList() throws Exception {
    StringBuilder b = new StringBuilder();
    b.append("<p>Redirects on this page:</p>\r\n");
    b.append("<ul>\r\n");
    b.append(" <li>Resources</li>\r\n");
    b.append(" <li>Data Types</li>\r\n");
    b.append(" <li>Code Systems</li>\r\n");
    b.append(" <li>Value Sets</li>\r\n");
    b.append(" <li>Extensions</li>\r\n");
    b.append(" <li>Profiles</li>\r\n");
    b.append(" <li>Naming Systems</li>\r\n");
    b.append(" <li>Examples</li>\r\n");
    b.append(" <li>Compartments</li>\r\n");
    b.append(" <li>Data Elements</li>\r\n");
    b.append(" <li>Search Parameters</li>\r\n");
    b.append(" <li>Implementation Guides</li>\r\n");
    b.append(" <li>SIDs</li>\r\n");
    b.append(" <li>Others From publish.ini</li>\r\n");
    b.append("</ul>\r\n");
    b.append("<table class=\"grid\">\r\n");
    b.append(" <tr><td><b>URL</b></td><td><b>Thing</b></td><td><b>Page</b></td></tr>");
    for (String n : definitions.sortedResourceNames()) definitions.addNs("http://hl7.org/fhir/" + n, n + " Resource", n.toLowerCase() + ".html");
    for (String n : definitions.getTypes().keySet()) definitions.addNs("http://hl7.org/fhir/" + n, "Data Type " + n, definitions.getSrcFile(n) + ".html#" + n);
    for (String n : definitions.getPrimitives().keySet()) definitions.addNs("http://hl7.org/fhir/" + n, "Primitive Data Type " + n, definitions.getSrcFile(n) + ".html#" + n);
    for (String n : definitions.getConstraints().keySet()) definitions.addNs("http://hl7.org/fhir/" + n, "Data Type Profile " + n, definitions.getSrcFile(n) + ".html#" + n);
    for (String n : definitions.getInfrastructure().keySet()) definitions.addNs("http://hl7.org/fhir/" + n, "Data Type " + n, definitions.getSrcFile(n) + ".html#" + n);
    for (CodeSystem cs : getCodeSystems().getList()) if (cs != null && cs.getUrl().startsWith("http://hl7.org/fhir"))
        definitions.addNs(cs.getUrl(), "CodeSystem " + cs.getName(), cs.getUserString("path"));
    for (ValueSet vs : getValueSets().getList()) if (vs.getUrl().startsWith("http://hl7.org/fhir"))
        definitions.addNs(vs.getUrl(), "ValueSet " + vs.present(), vs.getUserString("path"));
    for (ConceptMap cm : getConceptMaps().getList()) if (cm.getUrl().startsWith("http://hl7.org/fhir"))
        definitions.addNs(cm.getUrl(), "Concept Map" + cm.getName(), cm.getUserString("path"));
    for (StructureDefinition sd : profiles.getList()) if (sd.getUrl().startsWith("http://hl7.org/fhir") && !definitions.getResourceTemplates().containsKey(sd.getName()))
        definitions.addNs(sd.getUrl(), "Profile " + sd.getName(), sd.getUserString("path"));
    for (StructureDefinition sd : workerContext.getExtensionDefinitions()) if (sd.getUrl().startsWith("http://hl7.org/fhir"))
        definitions.addNs(sd.getUrl(), "Profile " + sd.getName(), sd.getUserString("path"));
    for (NamingSystem nss : definitions.getNamingSystems()) {
        String url = null;
        definitions.addNs("http://hl7.org/fhir/NamingSystem/" + nss.getId(), "System " + nss.getName(), nss.getUserString("path"));
        for (NamingSystemUniqueIdComponent t : nss.getUniqueId()) {
            if (t.getType() == NamingSystemIdentifierType.URI)
                url = t.getValue();
        }
        if (url != null && url.startsWith("http://hl7.org/fhir"))
            definitions.addNs(url, "System " + nss.getName(), nss.getUserString("path"));
    }
    for (String n : ini.getPropertyNames("redirects")) {
        String[] parts = ini.getStringProperty("redirects", n).split("\\;");
        definitions.addNs(n, "System " + parts[0], parts[1]);
    }
    for (ImplementationGuideDefn ig : definitions.getIgs().values()) {
        if (!ig.isCore()) {
            definitions.addNs("http://hl7.org/fhir/ImplementationGuide/" + ig.getCode(), ig.getName(), ig.getHomePage());
            definitions.addNs("http://hl7.org/fhir/" + ig.getCode(), ig.getName(), ig.getHomePage());
        }
    }
    for (Compartment t : definitions.getCompartments()) {
        definitions.addNs(t.getUri(), t.getName(), "compartmentdefinition.html#" + t.getName());
    }
    List<String> list = new ArrayList<String>();
    list.addAll(definitions.getRedirectList().keySet());
    Collections.sort(list);
    for (String url : list) {
        NamespacePair p = definitions.getRedirectList().get(url);
        b.append(" <tr><td>" + Utilities.escapeXml(url) + "</td><td>" + hsplt(Utilities.escapeXml(p.desc)) + "</td><td><a href=\"" + p.page + "\">" + hsplt(Utilities.escapeXml(p.page)) + "</a></td></tr>\r\n");
    }
    b.append("</table>\r\n");
    b.append("<p>" + Integer.toString(list.size()) + " Entries</p>\r\n");
    return b.toString();
}

Example 38 with StructureDefinition

use of org.hl7.fhir.r4b.model.StructureDefinition in project kindling by HL7.

the class ExampleInspector method fetch.

@Override
public Element fetch(IResourceValidator validator, Object appContext, String url) throws IOException, FHIRException {
    String[] parts = url.split("\\/");
    if (parts.length == 2 && definitions.hasResource(parts[0])) {
        ResourceDefn r = definitions.getResourceByName(parts[0]);
        for (Example e : r.getExamples()) {
            if (e.getElement() == null && e.hasXml()) {
                e.setElement(new org.hl7.fhir.r5.elementmodel.XmlParser(context).parse(e.getXml()));
                if (e.getElement().getProperty().getStructure().getBaseDefinition().contains("MetadataResource")) {
                    String urle = e.getElement().getChildValue("url");
                    String v = e.getElement().getChildValue("url");
                    if (urle != null && urle.startsWith("http://hl7.org/fhir") && !version.toCode().equals(v)) {
                        e.getElement().setChildValue("version", version.toCode());
                    }
                }
            }
            if (e.getElement() != null) {
                if (e.getElement().fhirType().equals("Bundle")) {
                    for (Base b : e.getElement().listChildrenByName("entry")) {
                        if (b.getChildByName("resource").hasValues()) {
                            Element res = (Element) b.getChildByName("resource").getValues().get(0);
                            if (res.fhirType().equals(parts[0]) && parts[1].equals(res.getChildValue("id"))) {
                                return res;
                            }
                        }
                    }
                } else if (e.getElement().fhirType().equals(parts[0]) && e.getId().equals(parts[1])) {
                    return e.getElement();
                }
            }
        }
        try {
            if (parts[0].equals("StructureDefinition"))
                return new ObjectConverter(context).convert(context.fetchResourceWithException(StructureDefinition.class, "http://hl7.org/fhir/" + parts[0] + "/" + parts[1]));
            if (parts[0].equals("OperationDefinition"))
                return new ObjectConverter(context).convert(context.fetchResourceWithException(OperationDefinition.class, "http://hl7.org/fhir/" + parts[0] + "/" + parts[1]));
            if (parts[0].equals("SearchParameter"))
                return new ObjectConverter(context).convert(context.fetchResourceWithException(SearchParameter.class, "http://hl7.org/fhir/" + parts[0] + "/" + parts[1]));
            if (parts[0].equals("ValueSet"))
                return new ObjectConverter(context).convert(context.fetchResourceWithException(ValueSet.class, "http://hl7.org/fhir/" + parts[0] + "/" + parts[1]));
            if (parts[0].equals("CodeSystem"))
                return new ObjectConverter(context).convert(context.fetchResourceWithException(CodeSystem.class, "http://hl7.org/fhir/" + parts[0] + "/" + parts[1]));
        } catch (Exception e) {
            return null;
        }
        return null;
    } else
        return null;
}

Example 39 with StructureDefinition

use of org.hl7.fhir.r4b.model.StructureDefinition in project kindling by HL7.

the class CDAGenerator method finish.

private void finish() throws FileNotFoundException, IOException {
    StringBuilder b = new StringBuilder();
    for (StructureDefinition sd : structures) {
        new XmlParser().setOutputStyle(OutputStyle.PRETTY).compose(new FileOutputStream(Utilities.path(target, sd.getId() + ".xml")), sd);
        b.append("   <resource>\r\n" + "     <purpose value=\"logical\"/>\r\n" + "     <name value=\"" + sd.getName() + "\"/>\r\n" + "     <sourceUri value=\"cda\\cda-logical-" + sd.getId() + ".xml\"/>\r\n" + "   </resource>\r\n");
    }
    TextFile.stringToFile(b.toString(), Utilities.path(target, "ig-template.xml"));
// dumpPaths();
}

Example 40 with StructureDefinition

use of org.hl7.fhir.r4b.model.StructureDefinition in project kindling by HL7.

the class CDAGenerator method buildInfrastructureRoot.

private void buildInfrastructureRoot() throws DefinitionException {
    StructureDefinition sd = new StructureDefinition();
    sd.setId("InfrastructureRoot");
    sd.setUrl("http://hl7.org/fhir/cda/StructureDefinition/InfrastructureRoot");
    library.put(sd.getUrl(), sd);
    sd.setName("Base Type for all classes in the CDA structure");
    sd.setTitle("InfrastructureRoot");
    sd.setStatus(PublicationStatus.ACTIVE);
    sd.setExperimental(false);
    sd.setPublisher("HL7");
    sd.setDescription("Defines the base elements and attributes on all CDA elements (other than data types)");
    sd.setKind(StructureDefinitionKind.LOGICAL);
    sd.setType(sd.getUrl());
    sd.setAbstract(true);
    sd.addExtension().setUrl("http://hl7.org/fhir/StructureDefinition/elementdefinition-namespace").setValue(new UriType("urn:hl7-org:v3"));
    sd.setBaseDefinition("http://hl7.org/fhir/cda/StructureDefinition/ANY");
    sd.setDerivation(TypeDerivationRule.SPECIALIZATION);
    ElementDefinition edb = new ElementDefinition();
    edb.setPath(sd.getId());
    seePath(edb);
    edb.setMin(1);
    edb.setMax("*");
    edb.addType().setCode("Element");
    sd.getDifferential().getElement().add(edb);
    ElementDefinition ed = new ElementDefinition();
    ed.setPath("InfrastructureRoot.realmCode");
    seePath(ed);
    ed.setMin(0);
    ed.setMax("*");
    ed.setDefinition("When valued in an instance, this attribute signals the imposition of realm-specific constraints. The value of this attribute identifies the realm in question");
    ed.addType().setCode("http://hl7.org/fhir/cda/StructureDefinition/CS");
    sd.getDifferential().getElement().add(ed);
    ed = new ElementDefinition();
    ed.setPath("InfrastructureRoot.typeId");
    seePath(ed);
    ed.setMin(0);
    ed.setMax("1");
    ed.setDefinition("When valued in an instance, this attribute signals the imposition of constraints defined in an HL7-specified message type. This might be a common type (also known as CMET in the messaging communication environment), or content included within a wrapper. The value of this attribute provides a unique identifier for the type in question.");
    ed.addType().setCode("http://hl7.org/fhir/cda/StructureDefinition/II");
    sd.getDifferential().getElement().add(ed);
    ed = new ElementDefinition();
    ed.setPath("InfrastructureRoot.templateId");
    seePath(ed);
    ed.setMin(0);
    ed.setMax("*");
    ed.setDefinition("When valued in an instance, this attribute signals the imposition of a set of template-defined constraints. The value of this attribute provides a unique identifier for the templates in question");
    ed.addType().setCode("http://hl7.org/fhir/cda/StructureDefinition/II");
    sd.getDifferential().getElement().add(ed);
    new ProfileUtilities(null, null, null).setIds(sd, true);
    structures.add(sd);
}