use of org.hl7.fhir.r4b.model.StructureDefinition in project kindling by HL7.
the class CDAGenerator method addInfrastructureRootAttributes.
private void addInfrastructureRootAttributes(List<ElementDefinition> list, String path) {
StructureDefinition any = getDataType("http://hl7.org/fhir/cda/StructureDefinition/ANY");
addAbstractClassAttributes(list, path, any);
StructureDefinition ir = getDataType("http://hl7.org/fhir/cda/StructureDefinition/InfrastructureRoot");
addAbstractClassAttributes(list, path, ir);
}
use of org.hl7.fhir.r4b.model.StructureDefinition in project kindling by HL7.
the class CDAGenerator method processDataTypes.
private void processDataTypes(String filename) throws FileNotFoundException, ParserConfigurationException, SAXException, IOException, FHIRFormatError, DefinitionException {
System.out.println("Process Data Types");
Document dtMif = XMLUtil.parseFileToDom(filename);
List<Element> dts = new ArrayList<Element>();
XMLUtil.getNamedChildren(dtMif.getDocumentElement(), "mif:datatype", dts);
for (Element dt : dts) {
String n = dt.getAttribute("name");
types.put(n, dt);
if (n.equals("IVL")) {
processDataType(dt, n + "_TS", "TS");
processDataType(dt, n + "_PQ", "PQ");
processDataType(dt, n + "_INT", "INT");
} else if (n.equals("PIVL")) {
processDataType(dt, n + "_TS", null);
} else if (n.equals("EIVL")) {
processDataType(dt, n + "_TS", null);
} else if (n.equals("RTO")) {
processDataType(dt, n + "_PQ_PQ", "PQ");
} else if (!"Binding".equals(dt.getAttribute("datatypeKind")))
processDataType(dt, n, null);
}
buildSXPR();
buildInfrastructureRoot();
for (StructureDefinition sd : structures) {
// if (!sd.getAbstract())
generateSnapShot(sd);
}
System.out.println(" ... done");
}
use of org.hl7.fhir.r4b.model.StructureDefinition in project kindling by HL7.
the class LogicalModelProcessor method genLogicalModelTable.
private String genLogicalModelTable(StructureDefinition sd, String prefix) throws Exception {
ProfileUtilities pu = new ProfileUtilities(page.getWorkerContext(), null, this);
XhtmlNode x = pu.generateTable(sd.getId() + "-definitions.html", sd, sd.hasSnapshot() ? false : true, page.getFolders().dstDir, false, sd.getId(), true, prefix, prefix, true, false, null, true, false);
return new XhtmlComposer(XhtmlComposer.HTML).compose(x);
}
use of org.hl7.fhir.r4b.model.StructureDefinition in project kindling by HL7.
the class TypeParser method convert.
public List<TypeRefComponent> convert(IWorkerContext context, String path, List<TypeRef> types, boolean resource, ElementDefinition ed) throws Exception {
List<TypeRefComponent> list = new ArrayList<TypeRefComponent>();
for (TypeRef t : types) {
// Expand any Resource(A|B|C) references
if (t.hasParams() && !("Reference".equals(t.getName()) || "canonical".equals(t.getName()))) {
throw new Exception("Only resource references can specify parameters. Path " + path);
}
if (t.getParams().size() > 0) {
if (t.getProfile() != null && t.getParams().size() != 1) {
throw new Exception("Cannot declare profile on a resource reference declaring multiple resource types. Path " + path);
}
if (t.getProfile() != null) {
TypeRefComponent childType = getTypeComponent(list, t.getName());
if (t.getVersioning() != null)
childType.setVersioning(t.getVersioning());
if (t.getName().equals("Reference") || t.getName().equals("canonical"))
childType.addTargetProfile(t.getProfile());
else
childType.addProfile(t.getProfile());
} else
for (String param : t.getParams()) {
TypeRefComponent childType = getTypeComponent(list, t.getName());
if (t.getVersioning() != null)
childType.setVersioning(t.getVersioning());
String p = "Any".equals(param) ? "Resource" : param;
if (t.getName().equals("Reference") || t.getName().equals("canonical"))
childType.addTargetProfile("http://hl7.org/fhir/StructureDefinition/" + p);
else
childType.addProfile("http://hl7.org/fhir/StructureDefinition/" + p);
}
} else if (t.isWildcardType()) {
// this list is filled out manually because it may be running before the types referred to have been loaded
for (String n : TypesUtilities.wildcardTypes(version)) {
TypeRefComponent tc = new TypeRefComponent().setCode(n);
if (t.getVersioning() != null)
tc.setVersioning(t.getVersioning());
list.add(tc);
}
} else if (Utilities.noString(t.getName()) && t.getProfile() != null) {
StructureDefinition sd = context.fetchResource(StructureDefinition.class, t.getProfile());
TypeRefComponent tc = getTypeComponent(list, sd != null ? sd.getType() : t.getName());
if (t.getVersioning() != null)
tc.setVersioning(t.getVersioning());
if (t.getName().equals("Reference"))
tc.addTargetProfile(t.getProfile());
else
tc.addProfile(t.getProfile());
} else if (t.getName().startsWith("=")) {
if (resource)
list.add(new TypeRefComponent().setCode("BackboneElement"));
else
list.add(new TypeRefComponent().setCode("Element"));
ToolingExtensions.addStringExtension(ed, "http://hl7.org/fhir/StructureDefinition/structuredefinition-explicit-type-name", t.getName().substring(1));
} else {
StructureDefinition sd = context.fetchTypeDefinition(t.getName());
if (sd == null)
throw new Exception("Unknown type '" + t.getName() + "'");
TypeRefComponent tc = getTypeComponent(list, sd.getType());
if (t.getVersioning() != null)
tc.setVersioning(t.getVersioning());
if (t.getName().equals("Reference")) {
if (t.hasProfile())
tc.addTargetProfile(t.getProfile());
} else if (t.hasProfile())
tc.addProfile(t.getProfile());
}
}
// no duplicates
for (TypeRefComponent tr1 : list) {
for (TypeRefComponent tr2 : list) {
if (tr1 != tr2) {
if (tr1.getWorkingCode().equals(tr2.getWorkingCode()))
throw new Exception("duplicate code " + tr1.getWorkingCode());
}
}
}
return list;
}
use of org.hl7.fhir.r4b.model.StructureDefinition in project kindling by HL7.
the class OldSpreadsheetParser method parseProfileSheet.
private ConstraintStructure parseProfileSheet(Definitions definitions, Profile ap, String n, List<String> namedSheets, boolean published, String usage, List<ValidationMessage> issues, WorkGroup wg, String fmm) throws Exception {
Sheet sheet;
ResourceDefn resource = new ResourceDefn();
sheet = loadSheet(n + "-Inv");
Map<String, Invariant> invariants = null;
if (sheet != null) {
invariants = readInvariants(sheet, n, n + "-Inv");
} else {
invariants = new HashMap<String, Invariant>();
}
sheet = loadSheet(n);
if (sheet == null)
throw new Exception("The StructureDefinition referred to a tab by the name of '" + n + "', but no tab by the name could be found");
for (int row = 0; row < sheet.rows.size(); row++) {
ElementDefn e = processLine(resource, sheet, row, invariants, true, ap, row == 0);
if (e != null)
for (TypeRef t : e.getTypes()) {
if (t.getProfile() != null && !t.getName().equals("Extension") && t.getProfile().startsWith("#")) {
if (!namedSheets.contains(t.getProfile().substring(1)))
namedSheets.add(t.getProfile().substring(1));
}
}
}
sheet = loadSheet(n + "-Extensions");
if (sheet != null) {
int row = 0;
while (row < sheet.rows.size()) {
if (sheet.getColumn(row, "Code").startsWith("!"))
row++;
else
row = processExtension(resource.getRoot().getElementByName(definitions, "extensions", true, false), sheet, row, definitions, ap.metadata("extension.uri"), ap, issues, invariants, wg);
}
}
sheet = loadSheet(n + "-Search");
if (sheet != null) {
readSearchParams(resource, sheet, true);
}
if (invariants != null) {
for (Invariant inv : invariants.values()) {
if (Utilities.noString(inv.getContext()))
throw new Exception("Type " + resource.getRoot().getName() + " Invariant " + inv.getId() + " has no context");
else {
ElementDefn ed = findContext(resource.getRoot(), inv.getContext(), "Type " + resource.getRoot().getName() + " Invariant " + inv.getId() + " Context");
// TODO: Need to resolve context based on element name, not just path
if (ed.getName().endsWith("[x]") && !inv.getContext().endsWith("[x]"))
inv.setFixedName(inv.getContext().substring(inv.getContext().lastIndexOf(".") + 1));
ed.getInvariants().put(inv.getId(), inv);
if (Utilities.noString(inv.getXpath())) {
throw new Exception("Type " + resource.getRoot().getName() + " Invariant " + inv.getId() + " (" + inv.getEnglish() + ") has no XPath statement");
} else if (inv.getXpath().contains("\""))
throw new Exception("Type " + resource.getRoot().getName() + " Invariant " + inv.getId() + " (" + inv.getEnglish() + ") contains a \" character");
// if (Utilities.noString(inv.getExpression()))
// throw new Exception("Type "+resource.getRoot().getName()+" Invariant "+inv.getId()+" ("+inv.getEnglish()+") has no Expression statement (in FHIRPath format)");
}
}
}
resource.getRoot().setProfileName(n);
if (n.toLowerCase().equals(ap.getId()))
throw new Exception("Duplicate Profile Name: Package id " + ap.getId() + " and profile id " + n.toLowerCase() + " are the same");
if (profileIds.containsKey(n.toLowerCase()))
throw new Exception("Duplicate Profile Name: " + n.toLowerCase() + " in " + ap.getId() + ", already registered in " + profileIds.get(n.toLowerCase()).getOwner());
ConstraintStructure p = new ConstraintStructure(n.toLowerCase(), resource.getRoot().getProfileName(), resource, ig != null ? ig : definitions.getUsageIG(usage, "Parsing " + name), wg, fmm, Utilities.existsInList(ap.metadata("Experimental"), "y", "Y", "true", "TRUE", "1"));
p.setOwner(ap.getId());
profileIds.put(n.toLowerCase(), p);
return p;
}
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