Examples with ProfileComparison org.hl7.fhir.r5.comparison.ProfileComparer.ProfileComparison used on opensource projects

Example 41 with ProfileComparison

use of org.hl7.fhir.r5.comparison.ProfileComparer.ProfileComparison in project org.hl7.fhir.core by hapifhir.

the class ProfileComparer method unite.

private ValueSet unite(ElementDefinition ed, ProfileComparison outcome, String path, ValueSet lvs, ValueSet rvs) {
    ValueSet vs = new ValueSet();
    if (lvs.hasCompose()) {
        for (ConceptSetComponent inc : lvs.getCompose().getInclude()) vs.getCompose().getInclude().add(inc);
        if (lvs.getCompose().hasExclude()) {
            outcome.messages.add(new ValidationMessage(Source.ProfileComparer, ValidationMessage.IssueType.STRUCTURE, path, "The value sets " + lvs.getUrl() + " has exclude statements, and no union involving it can be correctly determined", ValidationMessage.IssueSeverity.ERROR));
            status(ed, ProfileUtilities.STATUS_ERROR);
        }
    }
    if (rvs.hasCompose()) {
        for (ConceptSetComponent inc : rvs.getCompose().getInclude()) if (!mergeIntoExisting(vs.getCompose().getInclude(), inc))
            vs.getCompose().getInclude().add(inc);
        if (rvs.getCompose().hasExclude()) {
            outcome.messages.add(new ValidationMessage(Source.ProfileComparer, ValidationMessage.IssueType.STRUCTURE, path, "The value sets " + lvs.getUrl() + " has exclude statements, and no union involving it can be correctly determined", ValidationMessage.IssueSeverity.ERROR));
            status(ed, ProfileUtilities.STATUS_ERROR);
        }
    }
    return vs;
}

Example 42 with ProfileComparison

use of org.hl7.fhir.r5.comparison.ProfileComparer.ProfileComparison in project org.hl7.fhir.core by hapifhir.

the class ProfileComparer method compareElements.

/**
 * left and right refer to the same element. Are they compatible?
 * @param outcome
 * @param outcome
 * @param path
 * @param left
 * @param right
 * @- if there's a problem that needs fixing in this code
 * @throws DefinitionException
 * @throws IOException
 * @throws FHIRFormatError
 */
private boolean compareElements(ProfileComparison outcome, String path, DefinitionNavigator left, DefinitionNavigator right) throws DefinitionException, IOException, FHIRFormatError {
    // preconditions:
    assert (path != null);
    assert (left != null);
    assert (right != null);
    assert (left.path().equals(right.path()));
    // we ignore slicing right now - we're going to clone the root one anyway, and then think about clones
    // simple stuff
    ElementDefinition subset = new ElementDefinition();
    subset.setPath(left.path());
    // not allowed to be different:
    // can't be bothered even testing this one
    subset.getRepresentation().addAll(left.current().getRepresentation());
    if (!outcome.ruleCompares(subset, left.current().getDefaultValue(), right.current().getDefaultValue(), path + ".defaultValue[x]", BOTH_NULL))
        return false;
    subset.setDefaultValue(left.current().getDefaultValue());
    if (!outcome.ruleEqual(path, subset, left.current().getMeaningWhenMissing(), right.current().getMeaningWhenMissing(), "meaningWhenMissing Must be the same", true))
        return false;
    subset.setMeaningWhenMissing(left.current().getMeaningWhenMissing());
    if (!outcome.ruleEqual(subset, left.current().getIsModifier(), right.current().getIsModifier(), path, "isModifier"))
        return false;
    subset.setIsModifier(left.current().getIsModifier());
    if (!outcome.ruleEqual(subset, left.current().getIsSummary(), right.current().getIsSummary(), path, "isSummary"))
        return false;
    subset.setIsSummary(left.current().getIsSummary());
    // descriptive properties from ElementDefinition - merge them:
    subset.setLabel(mergeText(subset, outcome, path, "label", left.current().getLabel(), right.current().getLabel()));
    subset.setShort(mergeText(subset, outcome, path, "short", left.current().getShort(), right.current().getShort()));
    subset.setDefinition(mergeText(subset, outcome, path, "definition", left.current().getDefinition(), right.current().getDefinition()));
    subset.setComment(mergeText(subset, outcome, path, "comments", left.current().getComment(), right.current().getComment()));
    subset.setRequirements(mergeText(subset, outcome, path, "requirements", left.current().getRequirements(), right.current().getRequirements()));
    subset.getCode().addAll(mergeCodings(left.current().getCode(), right.current().getCode()));
    subset.getAlias().addAll(mergeStrings(left.current().getAlias(), right.current().getAlias()));
    subset.getMapping().addAll(mergeMappings(left.current().getMapping(), right.current().getMapping()));
    // left will win for example
    subset.setExample(left.current().hasExample() ? left.current().getExample() : right.current().getExample());
    subset.setMustSupport(left.current().getMustSupport() || right.current().getMustSupport());
    ElementDefinition superset = subset.copy();
    // compare and intersect
    superset.setMin(unionMin(left.current().getMin(), right.current().getMin()));
    superset.setMax(unionMax(left.current().getMax(), right.current().getMax()));
    subset.setMin(intersectMin(left.current().getMin(), right.current().getMin()));
    subset.setMax(intersectMax(left.current().getMax(), right.current().getMax()));
    outcome.rule(subset, subset.getMax().equals("*") || Integer.parseInt(subset.getMax()) >= subset.getMin(), path, "Cardinality Mismatch: " + card(left) + "/" + card(right));
    superset.getType().addAll(unionTypes(path, left.current().getType(), right.current().getType()));
    subset.getType().addAll(intersectTypes(subset, outcome, path, left.current().getType(), right.current().getType()));
    outcome.rule(subset, !subset.getType().isEmpty() || (!left.current().hasType() && !right.current().hasType()), path, "Type Mismatch:\r\n  " + typeCode(left) + "\r\n  " + typeCode(right));
    // <fixed[x]><!-- ?? 0..1 * Value must be exactly this --></fixed[x]>
    // <pattern[x]><!-- ?? 0..1 * Value must have at least these property values --></pattern[x]>
    superset.setMaxLengthElement(unionMaxLength(left.current().getMaxLength(), right.current().getMaxLength()));
    subset.setMaxLengthElement(intersectMaxLength(left.current().getMaxLength(), right.current().getMaxLength()));
    if (left.current().hasBinding() || right.current().hasBinding()) {
        compareBindings(outcome, subset, superset, path, left.current(), right.current());
    }
    // note these are backwards
    superset.getConstraint().addAll(intersectConstraints(path, left.current().getConstraint(), right.current().getConstraint()));
    subset.getConstraint().addAll(unionConstraints(subset, outcome, path, left.current().getConstraint(), right.current().getConstraint()));
    // now process the slices
    if (left.current().hasSlicing() || right.current().hasSlicing()) {
        if (isExtension(left.path()))
            return compareExtensions(outcome, path, superset, subset, left, right);
        else // return true;
        {
            ElementDefinitionSlicingComponent slicingL = left.current().getSlicing();
            ElementDefinitionSlicingComponent slicingR = right.current().getSlicing();
            throw new DefinitionException("Slicing is not handled yet");
        }
    // todo: name
    }
    // add the children
    outcome.subset.getSnapshot().getElement().add(subset);
    outcome.superset.getSnapshot().getElement().add(superset);
    return compareChildren(subset, outcome, path, left, right);
}

Example 43 with ProfileComparison

use of org.hl7.fhir.r5.comparison.ProfileComparer.ProfileComparison in project org.hl7.fhir.core by hapifhir.

the class ProfileComparer method renderStructure.

public XhtmlNode renderStructure(ProfileComparison comp, String id, String prefix, String corePath) throws FHIRException, IOException {
    HierarchicalTableGenerator gen = new HierarchicalTableGenerator(Utilities.path("[tmp]", "compare"), false, true);
    gen.setTranslator(session.getContextRight().translator());
    TableModel model = gen.initComparisonTable(corePath, id);
    genElementComp(null, /* oome back to this later */
    gen, model.getRows(), comp.combined, corePath, prefix, null, true);
    return gen.generate(model, prefix, 0, null);
}

Example 44 with ProfileComparison

use of org.hl7.fhir.r5.comparison.ProfileComparer.ProfileComparison in project org.hl7.fhir.core by hapifhir.

the class ProfileComparer method checkAddTypeUnion.

private void checkAddTypeUnion(ProfileComparison comp, StructuralMatch<ElementDefinitionNode> res, String path, List<TypeRefComponent> results, TypeRefComponent nw, IWorkerContext ctxt) throws DefinitionException, IOException, FHIRFormatError {
    boolean pfound = false;
    boolean tfound = false;
    nw = nw.copy();
    if (nw.hasAggregation())
        throw new DefinitionException("Aggregation not supported: " + path);
    for (TypeRefComponent ex : results) {
        if (Utilities.equals(ex.getWorkingCode(), nw.getWorkingCode())) {
            if (!ex.hasProfile() && !nw.hasProfile())
                pfound = true;
            else if (!ex.hasProfile()) {
                pfound = true;
            } else if (!nw.hasProfile()) {
                pfound = true;
                ex.setProfile(null);
            } else {
                // both have profiles. Is one derived from the other?
                StructureDefinition sdex = ((IWorkerContext) ex.getUserData("ctxt")).fetchResource(StructureDefinition.class, ex.getProfile().get(0).getValue());
                StructureDefinition sdnw = ctxt.fetchResource(StructureDefinition.class, nw.getProfile().get(0).getValue());
                if (sdex != null && sdnw != null) {
                    if (sdex.getUrl().equals(sdnw.getUrl())) {
                        pfound = true;
                    } else if (derivesFrom(sdex, sdnw, ((IWorkerContext) ex.getUserData("ctxt")))) {
                        ex.setProfile(nw.getProfile());
                        pfound = true;
                    } else if (derivesFrom(sdnw, sdex, ctxt)) {
                        pfound = true;
                    } else if (sdnw.getSnapshot().getElement().get(0).getPath().equals(sdex.getSnapshot().getElement().get(0).getPath())) {
                        ProfileComparison compP = (ProfileComparison) session.compare(sdex, sdnw);
                        if (compP != null && compP.getUnion() != null) {
                            // might be null if circular
                            pfound = true;
                            ex.addProfile("#" + compP.getId());
                        }
                    }
                }
            }
            if (!ex.hasTargetProfile() && !nw.hasTargetProfile())
                tfound = true;
            else if (!ex.hasTargetProfile()) {
                tfound = true;
            } else if (!nw.hasTargetProfile()) {
                tfound = true;
                ex.setTargetProfile(null);
            } else {
                // both have profiles. Is one derived from the other?
                StructureDefinition sdex = ((IWorkerContext) ex.getUserData("ctxt")).fetchResource(StructureDefinition.class, ex.getTargetProfile().get(0).getValue());
                StructureDefinition sdnw = ctxt.fetchResource(StructureDefinition.class, nw.getTargetProfile().get(0).getValue());
                if (sdex != null && sdnw != null) {
                    if (matches(sdex, sdnw)) {
                        tfound = true;
                    } else if (derivesFrom(sdex, sdnw, ((IWorkerContext) ex.getUserData("ctxt")))) {
                        ex.setTargetProfile(nw.getTargetProfile());
                        tfound = true;
                    } else if (derivesFrom(sdnw, sdex, ctxt)) {
                        tfound = true;
                    } else if (sdnw.getSnapshot().getElement().get(0).getPath().equals(sdex.getSnapshot().getElement().get(0).getPath())) {
                        ProfileComparison compP = (ProfileComparison) session.compare(sdex, sdnw);
                        if (compP.getUnion() != null) {
                            tfound = true;
                            ex.addTargetProfile("#" + compP.getId());
                        }
                    }
                }
            }
        }
    }
    if (!tfound || !pfound) {
        nw.setUserData("ctxt", ctxt);
        results.add(nw);
    }
}

Example 45 with ProfileComparison

use of org.hl7.fhir.r5.comparison.ProfileComparer.ProfileComparison in project org.hl7.fhir.core by hapifhir.

the class ProfileComparer method intersectTypes.

private Collection<? extends TypeRefComponent> intersectTypes(ProfileComparison comp, StructuralMatch<ElementDefinitionNode> res, ElementDefinition ed, String path, List<TypeRefComponent> left, List<TypeRefComponent> right) throws DefinitionException, IOException, FHIRFormatError {
    List<TypeRefComponent> result = new ArrayList<TypeRefComponent>();
    for (TypeRefComponent l : left) {
        if (l.hasAggregation())
            throw new DefinitionException("Aggregation not supported: " + path);
        boolean pfound = false;
        boolean tfound = false;
        TypeRefComponent c = l.copy();
        for (TypeRefComponent r : right) {
            if (r.hasAggregation())
                throw new DefinitionException("Aggregation not supported: " + path);
            if (!l.hasProfile() && !r.hasProfile()) {
                pfound = true;
            } else if (!r.hasProfile()) {
                pfound = true;
            } else if (!l.hasProfile()) {
                pfound = true;
                c.setProfile(r.getProfile());
            } else {
                StructureDefinition sdl = resolveProfile(comp, res, path, l.getProfile().get(0).getValue(), comp.getLeft().getName(), session.getContextLeft());
                StructureDefinition sdr = resolveProfile(comp, res, path, r.getProfile().get(0).getValue(), comp.getRight().getName(), session.getContextRight());
                if (sdl != null && sdr != null) {
                    if (sdl == sdr) {
                        pfound = true;
                    } else if (derivesFrom(sdl, sdr, session.getContextLeft())) {
                        pfound = true;
                    } else if (derivesFrom(sdr, sdl, session.getContextRight())) {
                        c.setProfile(r.getProfile());
                        pfound = true;
                    } else if (sdl.getType().equals(sdr.getType())) {
                        ProfileComparison compP = (ProfileComparison) session.compare(sdl, sdr);
                        if (compP != null && compP.getIntersection() != null) {
                            pfound = true;
                            c.addProfile("#" + compP.getId());
                        }
                    }
                }
            }
            if (!l.hasTargetProfile() && !r.hasTargetProfile()) {
                tfound = true;
            } else if (!r.hasTargetProfile()) {
                tfound = true;
            } else if (!l.hasTargetProfile()) {
                tfound = true;
                c.setTargetProfile(r.getTargetProfile());
            } else {
                StructureDefinition sdl = resolveProfile(comp, res, path, l.getTargetProfile().get(0).getValue(), comp.getLeft().getName(), session.getContextLeft());
                StructureDefinition sdr = resolveProfile(comp, res, path, r.getTargetProfile().get(0).getValue(), comp.getRight().getName(), session.getContextRight());
                if (sdl != null && sdr != null) {
                    if (matches(sdl, sdr)) {
                        tfound = true;
                    } else if (derivesFrom(sdl, sdr, session.getContextLeft())) {
                        tfound = true;
                    } else if (derivesFrom(sdr, sdl, session.getContextRight())) {
                        c.setTargetProfile(r.getTargetProfile());
                        tfound = true;
                    } else if (sdl.getType().equals(sdr.getType())) {
                        ProfileComparison compP = (ProfileComparison) session.compare(sdl, sdr);
                        if (compP != null && compP.getIntersection() != null) {
                            tfound = true;
                            c.addTargetProfile("#" + compP.getId());
                        }
                    }
                }
            }
        }
        if (pfound && tfound)
            result.add(c);
    }
    return result;
}