Examples with ProfileUtilities org.hl7.fhir.r5.conformance.ProfileUtilities used on opensource projects

Example 91 with ProfileUtilities

use of org.hl7.fhir.r5.conformance.ProfileUtilities in project org.hl7.fhir.core by hapifhir.

the class StructureMapUtilities method analyse.

/**
 * Given a structure map, return a set of analyses on it.
 * <p>
 * Returned:
 * - a list or profiles for what it will create. First profile is the target
 * - a table with a summary (in xhtml) for easy human undertanding of the mapping
 *
 * @param appInfo
 * @param map
 * @return
 * @throws Exception
 */
public StructureMapAnalysis analyse(Object appInfo, StructureMap map) throws FHIRException {
    ids.clear();
    StructureMapAnalysis result = new StructureMapAnalysis();
    TransformContext context = new TransformContext(appInfo);
    VariablesForProfiling vars = new VariablesForProfiling(this, false, false);
    StructureMapGroupComponent start = map.getGroup().get(0);
    for (StructureMapGroupInputComponent t : start.getInput()) {
        PropertyWithType ti = resolveType(map, t.getType(), t.getMode());
        if (t.getMode() == StructureMapInputMode.SOURCE)
            vars.add(VariableMode.INPUT, t.getName(), ti);
        else
            vars.add(VariableMode.OUTPUT, t.getName(), createProfile(map, result.profiles, ti, start.getName(), start));
    }
    result.summary = new XhtmlNode(NodeType.Element, "table").setAttribute("class", "grid");
    XhtmlNode tr = result.summary.addTag("tr");
    tr.addTag("td").addTag("b").addText("Source");
    tr.addTag("td").addTag("b").addText("Target");
    log("Start Profiling Transform " + map.getUrl());
    analyseGroup("", context, map, vars, start, result);
    ProfileUtilities pu = new ProfileUtilities(worker, null, pkp);
    for (StructureDefinition sd : result.getProfiles()) pu.cleanUpDifferential(sd);
    return result;
}

Example 92 with ProfileUtilities

use of org.hl7.fhir.r5.conformance.ProfileUtilities in project org.hl7.fhir.core by hapifhir.

the class QuestionnaireBuilder method selectTypes.

private void selectTypes(StructureDefinition profile, QuestionnaireItemComponent sub, TypeRefComponent t, List<QuestionnaireResponse.QuestionnaireResponseItemComponent> source, List<QuestionnaireResponse.QuestionnaireResponseItemComponent> dest) throws FHIRFormatError {
    List<QuestionnaireResponse.QuestionnaireResponseItemComponent> temp = new ArrayList<QuestionnaireResponse.QuestionnaireResponseItemComponent>();
    for (QuestionnaireResponse.QuestionnaireResponseItemComponent g : source) if (instanceOf(t, (Element) g.getUserData("object")))
        temp.add(g);
    for (QuestionnaireResponse.QuestionnaireResponseItemComponent g : temp) source.remove(g);
    for (QuestionnaireResponse.QuestionnaireResponseItemComponent g : temp) {
        // it should be empty
        assert (g.getItem().size() == 0);
        QuestionnaireResponse.QuestionnaireResponseItemComponent q = g.addItem();
        q.setLinkId(g.getLinkId() + "._type");
        q.setText("type");
        QuestionnaireResponseItemAnswerComponent a = q.addAnswer();
        if (t.hasTarget()) {
            for (UriType u : t.getTargetProfile()) {
                if (u.getValue().startsWith("http://hl7.org/fhir/StructureDefinition/")) {
                    Coding cc = new Coding();
                    a.setValue(cc);
                    cc.setCode(u.getValue().substring(40));
                    cc.setSystem("http://hl7.org/fhir/resource-types");
                }
            }
        } else {
            Coding cc = new Coding();
            a.setValue(cc);
            ProfileUtilities pu = new ProfileUtilities(context, null, null);
            StructureDefinition ps = null;
            if (t.hasProfile())
                ps = pu.getProfile(profile, t.getProfile().get(0).getValue());
            if (ps != null) {
                cc.setCode(t.getProfile().get(0).getValue());
                cc.setSystem("http://hl7.org/fhir/resource-types");
            } else {
                cc.setCode(t.getWorkingCode());
                cc.setSystem("http://hl7.org/fhir/data-types");
            }
        }
        // 1st: create the subgroup
        QuestionnaireResponse.QuestionnaireResponseItemComponent subg = a.addItem();
        dest.add(subg);
        subg.setLinkId(sub.getLinkId());
        subg.setText(sub.getText());
        subg.setUserData("object", g.getUserData("object"));
    }
}

Example 93 with ProfileUtilities

use of org.hl7.fhir.r5.conformance.ProfileUtilities in project org.hl7.fhir.core by hapifhir.

the class ProfileUtilitiesTests method testSimple.

/**
 * This is simple: we just create an empty differential, generate the snapshot, and then insist it must match the base
 *
 * @param context2
 * @
 * @throws EOperationOutcome
 */
private void testSimple() throws EOperationOutcome, Exception {
    StructureDefinition focus = new StructureDefinition();
    StructureDefinition base = context.fetchResource(StructureDefinition.class, "http://hl7.org/fhir/StructureDefinition/Patient").copy();
    focus.setUrl(Utilities.makeUuidUrn());
    focus.setBaseDefinition(base.getUrl());
    focus.setType("Patient");
    focus.setDerivation(TypeDerivationRule.CONSTRAINT);
    List<ValidationMessage> messages = new ArrayList<ValidationMessage>();
    new ProfileUtilities(context, messages, null).generateSnapshot(base, focus, focus.getUrl(), "Simple Test");
    boolean ok = base.getSnapshot().getElement().size() == focus.getSnapshot().getElement().size();
    for (int i = 0; i < base.getSnapshot().getElement().size(); i++) {
        if (ok) {
            ElementDefinition b = base.getSnapshot().getElement().get(i);
            ElementDefinition f = focus.getSnapshot().getElement().get(i);
            if (!f.hasBase() || !b.getPath().equals(f.getBase().getPath()))
                ok = false;
            else {
                f.setBase(null);
                ok = Base.compareDeep(b, f, true);
            }
        }
    }
    if (!ok) {
        compareXml(base, focus);
        throw new FHIRException("Snap shot generation simple test failed");
    } else
        System.out.println("Snap shot generation simple test passed");
}

Example 94 with ProfileUtilities

use of org.hl7.fhir.r5.conformance.ProfileUtilities in project org.hl7.fhir.core by hapifhir.

the class ProfileUtilitiesTests method testDocumentationAppend.

/**
 * check that documentation appending is working
 *
 * @param context2
 * @
 * @throws EOperationOutcome
 */
private void testDocumentationAppend() throws EOperationOutcome, Exception {
    StructureDefinition focus = new StructureDefinition();
    StructureDefinition base = context.fetchResource(StructureDefinition.class, "http://hl7.org/fhir/StructureDefinition/Patient").copy();
    focus.setUrl(Utilities.makeUuidUrn());
    focus.setBaseDefinition(base.getUrl());
    focus.setType(base.getType());
    focus.setDerivation(TypeDerivationRule.CONSTRAINT);
    ElementDefinition id = focus.getDifferential().addElement();
    id.setPath("Patient.identifier");
    id.setDefinition("... some more doco");
    List<ValidationMessage> messages = new ArrayList<ValidationMessage>();
    new ProfileUtilities(context, messages, null).generateSnapshot(base, focus, focus.getUrl(), "Simple Test");
    boolean ok = base.getSnapshot().getElement().size() == focus.getSnapshot().getElement().size();
    for (int i = 0; i < base.getSnapshot().getElement().size(); i++) {
        if (ok) {
            ElementDefinition b = base.getSnapshot().getElement().get(i);
            ElementDefinition f = focus.getSnapshot().getElement().get(i);
            if (!f.hasBase() || !b.getPath().equals(f.getBase().getPath()))
                ok = false;
            else {
                f.setBase(null);
                if (f.getPath().equals("Patient.identifier")) {
                    ok = f.getDefinition().length() > b.getDefinition().length();
                    if (ok) {
                        f.setDefinition(null);
                        b.setDefinition(null);
                    }
                }
                ok = ok && Base.compareDeep(b, f, true);
            }
        }
    }
    if (!ok) {
        compareXml(base, focus);
        throw new FHIRException("Snap shot generation documentation append failed");
    } else
        System.out.println("Snap shot generation documentation append test passed");
}

Example 95 with ProfileUtilities

use of org.hl7.fhir.r5.conformance.ProfileUtilities in project org.hl7.fhir.core by hapifhir.

the class ProfileUtilitiesTests method testSimple2.

/**
 * This is simple: we just create an empty differential, generate the snapshot, and then insist it must match the base. for a different resource with recursion
 *
 * @param context2
 * @
 * @throws EOperationOutcome
 */
private void testSimple2() throws EOperationOutcome, Exception {
    StructureDefinition focus = new StructureDefinition();
    StructureDefinition base = context.fetchResource(StructureDefinition.class, "http://hl7.org/fhir/StructureDefinition/ValueSet").copy();
    focus.setUrl(Utilities.makeUuidUrn());
    focus.setBaseDefinition(base.getUrl());
    focus.setType(base.getType());
    focus.setDerivation(TypeDerivationRule.CONSTRAINT);
    List<ValidationMessage> messages = new ArrayList<ValidationMessage>();
    new ProfileUtilities(context, messages, null).generateSnapshot(base, focus, focus.getUrl(), "Simple Test");
    boolean ok = base.getSnapshot().getElement().size() == focus.getSnapshot().getElement().size();
    for (int i = 0; i < base.getSnapshot().getElement().size(); i++) {
        if (ok) {
            ElementDefinition b = base.getSnapshot().getElement().get(i);
            ElementDefinition f = focus.getSnapshot().getElement().get(i);
            if (!f.hasBase() || !b.getPath().equals(f.getBase().getPath()))
                ok = false;
            else {
                f.setBase(null);
                ok = Base.compareDeep(b, f, true);
            }
        }
    }
    if (!ok) {
        compareXml(base, focus);
        throw new FHIRException("Snap shot generation simple test failed");
    } else
        System.out.println("Snap shot generation simple test passed");
}