Examples with Property org.hl7.fhir.r5.elementmodel.Property used on opensource projects

Example 86 with Property

use of org.hl7.fhir.r5.elementmodel.Property in project org.hl7.fhir.core by hapifhir.

the class StructureMapUtilities method createProfile.

private PropertyWithType createProfile(StructureMap map, List<StructureDefinition> profiles, PropertyWithType prop, String sliceName, Base ctxt) throws FHIRException {
    if (prop.getBaseProperty().getDefinition().getPath().contains("."))
        throw new DefinitionException("Unable to process entry point");
    String type = prop.getBaseProperty().getDefinition().getPath();
    String suffix = "";
    if (ids.containsKey(type)) {
        int id = ids.get(type);
        id++;
        ids.put(type, id);
        suffix = "-" + Integer.toString(id);
    } else
        ids.put(type, 0);
    StructureDefinition profile = new StructureDefinition();
    profiles.add(profile);
    profile.setDerivation(TypeDerivationRule.CONSTRAINT);
    profile.setType(type);
    profile.setBaseDefinition(prop.getBaseProperty().getStructure().getUrl());
    profile.setName("Profile for " + profile.getType() + " for " + sliceName);
    profile.setUrl(map.getUrl().replace("StructureMap", "StructureDefinition") + "-" + profile.getType() + suffix);
    // then we can easily assign this profile url for validation later when we actually transform
    ctxt.setUserData("profile", profile.getUrl());
    profile.setId(map.getId() + "-" + profile.getType() + suffix);
    profile.setStatus(map.getStatus());
    profile.setExperimental(map.getExperimental());
    profile.setDescription("Generated automatically from the mapping by the Java Reference Implementation");
    for (ContactDetail c : map.getContact()) {
        ContactDetail p = profile.addContact();
        p.setName(c.getName());
        for (ContactPoint cc : c.getTelecom()) p.addTelecom(cc);
    }
    profile.setDate(map.getDate());
    profile.setCopyright(map.getCopyright());
    profile.setFhirVersion(FHIRVersion.fromCode(Constants.VERSION));
    profile.setKind(prop.getBaseProperty().getStructure().getKind());
    profile.setAbstract(false);
    ElementDefinition ed = profile.getDifferential().addElement();
    ed.setPath(profile.getType());
    prop.profileProperty = new Property(worker, ed, profile);
    return prop;
}

Example 87 with Property

use of org.hl7.fhir.r5.elementmodel.Property in project org.hl7.fhir.core by hapifhir.

the class StructureMapUtilities method analyseSource.

private VariablesForProfiling analyseSource(String ruleId, TransformContext context, VariablesForProfiling vars, StructureMapGroupRuleSourceComponent src, XhtmlNode td) throws FHIRException {
    VariableForProfiling var = vars.get(VariableMode.INPUT, src.getContext());
    if (var == null)
        throw new FHIRException("Rule \"" + ruleId + "\": Unknown input variable " + src.getContext());
    PropertyWithType prop = var.getProperty();
    boolean optional = false;
    boolean repeating = false;
    if (src.hasCondition()) {
        optional = true;
    }
    if (src.hasElement()) {
        Property element = prop.getBaseProperty().getChild(prop.types.getType(), src.getElement());
        if (element == null)
            throw new FHIRException("Rule \"" + ruleId + "\": Unknown element name " + src.getElement());
        if (element.getDefinition().getMin() == 0)
            optional = true;
        if (element.getDefinition().getMax().equals("*"))
            repeating = true;
        VariablesForProfiling result = vars.copy(optional, repeating);
        TypeDetails type = new TypeDetails(CollectionStatus.SINGLETON);
        for (TypeRefComponent tr : element.getDefinition().getType()) {
            if (!tr.hasCode())
                throw new Error("Rule \"" + ruleId + "\": Element has no type");
            ProfiledType pt = new ProfiledType(tr.getWorkingCode());
            if (tr.hasProfile())
                pt.addProfiles(tr.getProfile());
            if (element.getDefinition().hasBinding())
                pt.addBinding(element.getDefinition().getBinding());
            type.addType(pt);
        }
        td.addText(prop.getPath() + "." + src.getElement());
        if (src.hasVariable())
            result.add(VariableMode.INPUT, src.getVariable(), new PropertyWithType(prop.getPath() + "." + src.getElement(), element, null, type));
        return result;
    } else {
        // ditto!
        td.addText(prop.getPath());
        return vars.copy(optional, repeating);
    }
}

Example 88 with Property

use of org.hl7.fhir.r5.elementmodel.Property in project org.hl7.fhir.core by hapifhir.

the class StructureMapUtilities method updateProfile.

private PropertyWithType updateProfile(VariableForProfiling var, String element, TypeDetails type, StructureMap map, List<StructureDefinition> profiles, String sliceName, Type fixed, StructureMapGroupRuleTargetComponent tgt) throws FHIRException {
    if (var == null) {
        assert (Utilities.noString(element));
        // 1. start the new structure definition
        StructureDefinition sdn = worker.fetchResource(StructureDefinition.class, type.getType());
        if (sdn == null)
            throw new FHIRException("Unable to find definition for " + type.getType());
        ElementDefinition edn = sdn.getSnapshot().getElementFirstRep();
        PropertyWithType pn = createProfile(map, profiles, new PropertyWithType(sdn.getId(), new Property(worker, edn, sdn), null, type), sliceName, tgt);
        // }
        return pn;
    } else {
        assert (!Utilities.noString(element));
        Property pvb = var.getProperty().getBaseProperty();
        Property pvd = var.getProperty().getProfileProperty();
        Property pc = pvb.getChild(element, var.property.types);
        if (pc == null)
            throw new DefinitionException("Unable to find a definition for " + pvb.getDefinition().getPath() + "." + element);
        // the profile structure definition (derived)
        StructureDefinition sd = var.getProperty().profileProperty.getStructure();
        ElementDefinition ednew = sd.getDifferential().addElement();
        ednew.setPath(var.getProperty().profileProperty.getDefinition().getPath() + "." + pc.getName());
        ednew.setUserData("slice-name", sliceName);
        ednew.setFixed(fixed);
        for (ProfiledType pt : type.getProfiledTypes()) {
            if (pt.hasBindings())
                ednew.setBinding(pt.getBindings().get(0));
            if (pt.getUri().startsWith("http://hl7.org/fhir/StructureDefinition/")) {
                String t = pt.getUri().substring(40);
                t = checkType(t, pc, pt.getProfiles());
                if (t != null) {
                    if (pt.hasProfiles()) {
                        for (String p : pt.getProfiles()) if (t.equals("Reference"))
                            ednew.getType(t).addTargetProfile(p);
                        else
                            ednew.getType(t).addProfile(p);
                    } else
                        ednew.getType(t);
                }
            }
        }
        return new PropertyWithType(var.property.path + "." + element, pc, new Property(worker, ednew, sd), type);
    }
}

Example 89 with Property

use of org.hl7.fhir.r5.elementmodel.Property in project org.hl7.fhir.core by hapifhir.

the class SHCParser method parse.

public List<NamedElement> parse(InputStream stream) throws IOException, FHIRFormatError, DefinitionException, FHIRException {
    List<NamedElement> res = new ArrayList<>();
    String src = TextFile.streamToString(stream).trim();
    List<String> list = new ArrayList<>();
    String pfx = null;
    if (src.startsWith("{")) {
        JsonObject json = JsonTrackingParser.parseJson(src);
        if (checkProperty(json, "$", "verifiableCredential", true, "Array")) {
            pfx = "verifiableCredential";
            JsonArray arr = json.getAsJsonArray("verifiableCredential");
            int i = 0;
            for (JsonElement e : arr) {
                if (!(e instanceof JsonPrimitive)) {
                    logError(line(e), col(e), "$.verifiableCredential[" + i + "]", IssueType.STRUCTURE, "Wrong Property verifiableCredential in JSON Payload. Expected : String but found " + JSONUtil.type(e), IssueSeverity.ERROR);
                } else {
                    list.add(e.getAsString());
                }
                i++;
            }
        } else {
            return res;
        }
    } else {
        list.add(src);
    }
    int c = 0;
    for (String ssrc : list) {
        String prefix = pfx == null ? "" : pfx + "[" + Integer.toString(c) + "].";
        c++;
        JWT jwt = null;
        try {
            jwt = decodeJWT(ssrc);
        } catch (Exception e) {
            logError(1, 1, prefix + "JWT", IssueType.INVALID, "Unable to decode JWT token", IssueSeverity.ERROR);
            return res;
        }
        map = jwt.map;
        checkNamedProperties(jwt.getPayload(), prefix + "payload", "iss", "nbf", "vc");
        checkProperty(jwt.getPayload(), prefix + "payload", "iss", true, "String");
        logError(1, 1, prefix + "JWT", IssueType.INFORMATIONAL, "The FHIR Validator does not check the JWT signature " + "(see https://demo-portals.smarthealth.cards/VerifierPortal.html or https://github.com/smart-on-fhir/health-cards-dev-tools) (Issuer = '" + jwt.getPayload().get("iss").getAsString() + "')", IssueSeverity.INFORMATION);
        checkProperty(jwt.getPayload(), prefix + "payload", "nbf", true, "Number");
        JsonObject vc = jwt.getPayload().getAsJsonObject("vc");
        if (vc == null) {
            logError(1, 1, "JWT", IssueType.STRUCTURE, "Unable to find property 'vc' in the payload", IssueSeverity.ERROR);
            return res;
        }
        String path = prefix + "payload.vc";
        checkNamedProperties(vc, path, "type", "credentialSubject");
        if (!checkProperty(vc, path, "type", true, "Array")) {
            return res;
        }
        JsonArray type = vc.getAsJsonArray("type");
        int i = 0;
        for (JsonElement e : type) {
            if (!(e instanceof JsonPrimitive)) {
                logError(line(e), col(e), path + ".type[" + i + "]", IssueType.STRUCTURE, "Wrong Property Type in JSON Payload. Expected : String but found " + JSONUtil.type(e), IssueSeverity.ERROR);
            } else {
                types.add(e.getAsString());
            }
            i++;
        }
        if (!types.contains("https://smarthealth.cards#health-card")) {
            logError(line(vc), col(vc), path, IssueType.STRUCTURE, "Card does not claim to be of type https://smarthealth.cards#health-card, cannot validate", IssueSeverity.ERROR);
            return res;
        }
        if (!checkProperty(vc, path, "credentialSubject", true, "Object")) {
            return res;
        }
        JsonObject cs = vc.getAsJsonObject("credentialSubject");
        path = path + ".credentialSubject";
        if (!checkProperty(cs, path, "fhirVersion", true, "String")) {
            return res;
        }
        JsonElement fv = cs.get("fhirVersion");
        if (!VersionUtilities.versionsCompatible(context.getVersion(), fv.getAsString())) {
            logError(line(fv), col(fv), path + ".fhirVersion", IssueType.STRUCTURE, "Card claims to be of version " + fv.getAsString() + ", cannot be validated against version " + context.getVersion(), IssueSeverity.ERROR);
            return res;
        }
        if (!checkProperty(cs, path, "fhirBundle", true, "Object")) {
            return res;
        }
        // ok. all checks passed, we can now validate the bundle
        Element e = jsonParser.parse(cs.getAsJsonObject("fhirBundle"), map);
        if (e != null) {
            res.add(new NamedElement(path, e));
        }
    }
    return res;
}

Example 90 with Property

use of org.hl7.fhir.r5.elementmodel.Property in project org.hl7.fhir.core by hapifhir.

the class TurtleParser method parseChildren.

private void parseChildren(Turtle src, String path, TTLComplex object, Element element, boolean primitive) throws FHIRException {
    List<Property> properties = element.getProperty().getChildProperties(element.getName(), null);
    Set<String> processed = new HashSet<String>();
    if (primitive)
        processed.add(FHIR_URI_BASE + "value");
    // first pass: process the properties
    for (Property property : properties) {
        if (property.isChoice()) {
            for (TypeRefComponent type : property.getDefinition().getType()) {
                String eName = property.getName().substring(0, property.getName().length() - 3) + Utilities.capitalize(type.getCode());
                parseChild(src, object, element, processed, property, path, getFormalName(property, eName));
            }
        } else {
            parseChild(src, object, element, processed, property, path, getFormalName(property));
        }
    }
    // second pass: check for things not processed
    if (policy != ValidationPolicy.NONE) {
        for (String u : object.getPredicates().keySet()) {
            if (!processed.contains(u)) {
                TTLObject n = object.getPredicates().get(u);
                logError(n.getLine(), n.getCol(), path, IssueType.STRUCTURE, context.formatMessage(I18nConstants.UNRECOGNISED_PREDICATE_, u), IssueSeverity.ERROR);
            }
        }
    }
}