Examples with CanonicalType org.hl7.fhir.r5.model.CanonicalType used on opensource projects

Example 26 with CanonicalType

use of org.hl7.fhir.r5.model.CanonicalType in project org.hl7.fhir.core by hapifhir.

the class JavaParserXmlGenerator method genElementCompose.

private void genElementCompose(Analysis analysis, TypeInfo ti, ElementDefinition ed, ElementDefinition inh) throws Exception {
    String name = ed.getName();
    if (name.endsWith("[x]") || name.equals("[type]")) {
        String en = name.endsWith("[x]") && !name.equals("[x]") ? name.replace("[x]", "") : "value";
        String pfx = name.endsWith("[x]") ? name.replace("[x]", "") : "";
        composer.append("    if (element.has" + upFirst(getElementName(en, false)) + "()) {\r\n");
        composer.append("      composeType(\"" + pfx + "\", element.get" + upFirst(getElementName(en, false)) + "());\r\n");
        composer.append("    }");
    } else {
        String comp = null;
        String en = null;
        String tn = ed.getUserString("java.type");
        if (ed.hasUserData("java.enum")) {
            EnumInfo ei = (EnumInfo) ed.getUserData("java.enum");
            ValueSet vs = ei.getValueSet();
            boolean enShared = vs.hasUserData("shared");
            if (enShared) {
                en = "Enumerations." + ei.getName();
            } else {
                en = analysis.getClassName() + "." + ei.getName();
            }
        } else {
            if (name.equals("extension")) {
                name = "extension";
                tn = "Extension";
            }
            if (tn.equals("XhtmlNode")) {
                tn = "xhtml";
                comp = "composeXhtml";
            } else if (isPrimitive(ed)) {
                comp = "compose" + tn.substring(0, tn.length() - 4);
            } else if (tn.contains("Reference(")) {
                comp = "composeReference";
                tn = "Reference";
            } else if (tn.contains("canonical(")) {
                comp = "composeCanonical";
                tn = "CanonicalType";
            } else if (tn.contains("(")) {
                comp = "compose" + tn;
            } else if ((ed.hasContentReference() || ed.isInlineType()) && !tn.startsWith(analysis.getClassName())) {
                comp = "compose" + analysis.getClassName() + tn;
            } else {
                comp = "compose" + tn;
            }
        }
        if (ed.unbounded()) {
            if (en != null) {
                composer.append("      if (element.has" + upFirst(getElementName(name, false)) + "()) \r\n");
                composer.append("        for (Enumeration<" + en + "> e : element.get" + upFirst(getElementName(name, false)) + "()) \r\n");
                composer.append("          composeEnumeration(\"" + name + "\", e, new " + en + "EnumFactory());\r\n");
            } else {
                String stn = ed.isInlineType() || ed.hasContentReference() ? analysis.getClassName() + "." + tn : tn;
                // String pfx = ed.isInlineType() || ed.hasContentReference() ? analysis.getClassName() : "";
                composer.append("    if (element.has" + upFirst(getElementName(name, false)) + "()) { \r\n");
                composer.append("      for (" + stn + " e : element.get" + upFirst(getElementName(name, false)) + "()) \r\n");
                if (ed.typeSummary().equals("Resource")) {
                    composer.append("        {\r\n");
                    composer.append("          xml.enter(FHIR_NS, \"" + name + "\");\r\n");
                    composer.append("          " + comp + "(e);\r\n");
                    composer.append("          xml.exit(FHIR_NS, \"" + name + "\");\r\n");
                    composer.append("        }\r\n");
                } else {
                    composer.append("          " + comp + "(\"" + name + "\", e);\r\n");
                }
                composer.append("    }\r\n");
            }
        } else if (en != null) {
            composer.append("    if (element.has" + upFirst(getElementName(name, false)) + "Element())\r\n");
            composer.append("      composeEnumeration(\"" + name + "\", element.get" + upFirst(getElementName(name, false)) + "Element(), new " + en + "EnumFactory());\r\n");
        } else if (!"xhtml".equals(ed.typeSummary()) && (isJavaPrimitive(ed) || ed.typeSummary().startsWith("canonical("))) {
            composer.append("    if (element.has" + upFirst(getElementName(name, false)) + "Element()) {\r\n");
            composer.append("      " + comp + "(\"" + name + "\", element.get" + upFirst(getElementName(name, false)) + "Element());\r\n");
            composer.append("    }\r\n");
        } else if (ed.typeSummary().equals("Resource")) {
            composer.append("    if (element.has" + upFirst(getElementName(name, false)) + "()) {\r\n");
            composer.append("      xml.enter(FHIR_NS, \"" + name + "\");\r\n");
            composer.append("      " + comp + "(element.get" + upFirst(getElementName(name, false)) + "());\r\n");
            composer.append("      xml.exit(FHIR_NS, \"" + name + "\");\r\n");
            composer.append("    }\r\n");
        } else if (inh != null && inh.unbounded()) {
            composer.append("    if (element.has" + upFirst(getElementName(name, false)) + "()) {\r\n");
            composer.append("      " + comp + "(\"" + name + "\", element.get" + upFirst(getElementName(name, false)) + "FirstRep());\r\n");
            composer.append("    }\r\n");
        } else {
            composer.append("    if (element.has" + upFirst(getElementName(name, false)) + "()) {\r\n");
            composer.append("      " + comp + "(\"" + name + "\", element.get" + upFirst(getElementName(name, false)) + "());\r\n");
            composer.append("    }\r\n");
        }
    }
}

Example 27 with CanonicalType

use of org.hl7.fhir.r5.model.CanonicalType in project org.hl7.fhir.core by hapifhir.

the class VersionConvertorPrimitiveTypeTests method testCanonicalType10_40Conversion.

@Test
public void testCanonicalType10_40Conversion() {
    ConversionContext10_40.INSTANCE.init(mock(VersionConvertor_10_40.class), CONTEXT_PATH);
    for (String urlString : URL_STRINGS) {
        {
            org.hl7.fhir.r4.model.CanonicalType src = new CanonicalType();
            src.setValueAsString(urlString);
            Assertions.assertEquals(urlString, src.getValueAsString());
            org.hl7.fhir.dstu2.model.Reference actualTgt = Canonical10_40.convertCanonicalToReference(src);
            Assertions.assertEquals(src.getValueAsString(), actualTgt.getReference());
        }
        {
            org.hl7.fhir.dstu2.model.Reference src = new org.hl7.fhir.dstu2.model.Reference(urlString);
            Assertions.assertEquals(urlString, src.getReference());
            org.hl7.fhir.r4.model.CanonicalType tgt = Canonical10_40.convertReferenceToCanonical(src);
            Assertions.assertEquals(src.getReference(), tgt.getValueAsString());
        }
    }
    ConversionContext10_40.INSTANCE.close(CONTEXT_PATH);
}

Example 28 with CanonicalType

use of org.hl7.fhir.r5.model.CanonicalType in project org.hl7.fhir.core by hapifhir.

the class ValueSetComparer method compareDefinitions.

private void compareDefinitions(ConceptSetComponent left, ConceptSetComponent right, StructuralMatch<Element> combined, ConceptSetComponent union, ConceptSetComponent intersection) {
    // system must match, but the rest might not. we're going to do the full comparison whatever, so the outcome looks consistent to the user
    List<CanonicalType> matchVSR = new ArrayList<>();
    for (CanonicalType l : left.getValueSet()) {
        CanonicalType r = findInList(right.getValueSet(), l, left.getValueSet());
        if (r == null) {
            union.getValueSet().add(l);
            combined.getChildren().add(new StructuralMatch<Element>(l, vmI(IssueSeverity.INFORMATION, "Removed ValueSet", "ValueSet.compose.include.valueSet")));
        } else {
            matchVSR.add(r);
            if (l.getValue().equals(r.getValue())) {
                union.getValueSet().add(l);
                intersection.getValueSet().add(l);
                StructuralMatch<Element> sm = new StructuralMatch<Element>(l, r, null);
                combined.getChildren().add(sm);
            } else {
                union.getValueSet().add(l);
                union.getValueSet().add(r);
                StructuralMatch<Element> sm = new StructuralMatch<Element>(l, r, vmI(IssueSeverity.INFORMATION, "Values are different", "ValueSet.compose.include.valueSet"));
                combined.getChildren().add(sm);
            }
        }
    }
    for (CanonicalType r : right.getValueSet()) {
        if (!matchVSR.contains(r)) {
            union.getValueSet().add(r);
            combined.getChildren().add(new StructuralMatch<Element>(vmI(IssueSeverity.INFORMATION, "Add ValueSet", "ValueSet.compose.include.valueSet"), r));
        }
    }
    List<ConceptReferenceComponent> matchCR = new ArrayList<>();
    for (ConceptReferenceComponent l : left.getConcept()) {
        ConceptReferenceComponent r = findInList(right.getConcept(), l, left.getConcept());
        if (r == null) {
            union.getConcept().add(l);
            combined.getChildren().add(new StructuralMatch<Element>(l, vmI(IssueSeverity.INFORMATION, "Removed this Concept", "ValueSet.compose.include.concept")));
        } else {
            matchCR.add(r);
            if (l.getCode().equals(r.getCode())) {
                ConceptReferenceComponent cu = new ConceptReferenceComponent();
                ConceptReferenceComponent ci = new ConceptReferenceComponent();
                union.getConcept().add(cu);
                intersection.getConcept().add(ci);
                StructuralMatch<Element> sm = new StructuralMatch<Element>(l, r);
                combined.getChildren().add(sm);
                compareConcepts(l, r, sm, cu, ci);
            } else {
                union.getConcept().add(l);
                union.getConcept().add(r);
                StructuralMatch<Element> sm = new StructuralMatch<Element>(l, r, vmI(IssueSeverity.INFORMATION, "Concepts are different", "ValueSet.compose.include.concept"));
                combined.getChildren().add(sm);
                compareConcepts(l, r, sm, null, null);
            }
        }
    }
    for (ConceptReferenceComponent r : right.getConcept()) {
        if (!matchCR.contains(r)) {
            union.getConcept().add(r);
            combined.getChildren().add(new StructuralMatch<Element>(vmI(IssueSeverity.INFORMATION, "Added this Concept", "ValueSet.compose.include.concept"), r));
        }
    }
    List<ConceptSetFilterComponent> matchFR = new ArrayList<>();
    for (ConceptSetFilterComponent l : left.getFilter()) {
        ConceptSetFilterComponent r = findInList(right.getFilter(), l, left.getFilter());
        if (r == null) {
            union.getFilter().add(l);
            combined.getChildren().add(new StructuralMatch<Element>(l, vmI(IssueSeverity.INFORMATION, "Removed this item", "ValueSet.compose.include.filter")));
        } else {
            matchFR.add(r);
            if (l.getProperty().equals(r.getProperty()) && l.getOp().equals(r.getOp())) {
                ConceptSetFilterComponent cu = new ConceptSetFilterComponent();
                ConceptSetFilterComponent ci = new ConceptSetFilterComponent();
                union.getFilter().add(cu);
                intersection.getFilter().add(ci);
                StructuralMatch<Element> sm = new StructuralMatch<Element>(l, r);
                combined.getChildren().add(sm);
                compareFilters(l, r, sm, cu, ci);
            } else {
                union.getFilter().add(l);
                union.getFilter().add(r);
                StructuralMatch<Element> sm = new StructuralMatch<Element>(l, r, vmI(IssueSeverity.INFORMATION, "Codes are different", "ValueSet.compose.include.filter"));
                combined.getChildren().add(sm);
                compareFilters(l, r, sm, null, null);
            }
        }
    }
    for (ConceptSetFilterComponent r : right.getFilter()) {
        if (!matchFR.contains(r)) {
            union.getFilter().add(r);
            combined.getChildren().add(new StructuralMatch<Element>(vmI(IssueSeverity.INFORMATION, "Added this item", "ValueSet.compose.include.filter"), r));
        }
    }
}

Example 29 with CanonicalType

use of org.hl7.fhir.r5.model.CanonicalType in project org.hl7.fhir.core by hapifhir.

the class ProfileUtilities method makeChoiceRows.

private void makeChoiceRows(List<Row> subRows, ElementDefinition element, HierarchicalTableGenerator gen, String corePath, String profileBaseFileName, boolean mustSupportMode) {
    // create a child for each choice
    for (TypeRefComponent tr : element.getType()) {
        if (!mustSupportMode || allTypesMustSupport(element) || isMustSupport(tr)) {
            Row choicerow = gen.new Row();
            String t = tr.getWorkingCode();
            if (isReference(t)) {
                choicerow.getCells().add(gen.new Cell(null, null, tail(element.getPath()).replace("[x]", Utilities.capitalize(t)), null, null));
                choicerow.getCells().add(gen.new Cell());
                choicerow.getCells().add(gen.new Cell(null, null, "", null, null));
                choicerow.setIcon("icon_reference.png", HierarchicalTableGenerator.TEXT_ICON_REFERENCE);
                Cell c = gen.new Cell();
                choicerow.getCells().add(c);
                if (ADD_REFERENCE_TO_TABLE) {
                    if (tr.getWorkingCode().equals("canonical"))
                        c.getPieces().add(gen.new Piece(corePath + "datatypes.html#canonical", "canonical", null));
                    else
                        c.getPieces().add(gen.new Piece(corePath + "references.html#Reference", "Reference", null));
                    if (!mustSupportMode && isMustSupportDirect(tr) && element.getMustSupport()) {
                        c.addPiece(gen.new Piece(null, " ", null));
                        c.addStyledText(translate("sd.table", "This type must be supported"), "S", "white", "red", null, false);
                    }
                    c.getPieces().add(gen.new Piece(null, "(", null));
                }
                boolean first = true;
                for (CanonicalType rt : tr.getTargetProfile()) {
                    if (!mustSupportMode || allProfilesMustSupport(tr.getTargetProfile()) || isMustSupport(rt)) {
                        if (!first)
                            c.getPieces().add(gen.new Piece(null, " | ", null));
                        genTargetLink(gen, profileBaseFileName, corePath, c, tr, rt.getValue());
                        if (!mustSupportMode && isMustSupport(rt) && element.getMustSupport()) {
                            c.addPiece(gen.new Piece(null, " ", null));
                            c.addStyledText(translate("sd.table", "This target must be supported"), "S", "white", "red", null, false);
                        }
                        first = false;
                    }
                }
                if (first) {
                    c.getPieces().add(gen.new Piece(null, "Any", null));
                }
                if (ADD_REFERENCE_TO_TABLE) {
                    c.getPieces().add(gen.new Piece(null, ")", null));
                }
            } else {
                StructureDefinition sd = context.fetchTypeDefinition(t);
                if (sd == null) {
                    System.out.println("Unable to find " + t);
                    sd = context.fetchTypeDefinition(t);
                } else if (sd.getKind() == StructureDefinitionKind.PRIMITIVETYPE) {
                    choicerow.getCells().add(gen.new Cell(null, null, tail(element.getPath()).replace("[x]", Utilities.capitalize(t)), sd.getDescription(), null));
                    choicerow.getCells().add(gen.new Cell());
                    choicerow.getCells().add(gen.new Cell(null, null, "", null, null));
                    choicerow.setIcon("icon_primitive.png", HierarchicalTableGenerator.TEXT_ICON_PRIMITIVE);
                    Cell c = gen.new Cell(null, corePath + "datatypes.html#" + t, sd.getType(), null, null);
                    choicerow.getCells().add(c);
                    if (!mustSupportMode && isMustSupport(tr) && element.getMustSupport()) {
                        c.addPiece(gen.new Piece(null, " ", null));
                        c.addStyledText(translate("sd.table", "This type must be supported"), "S", "white", "red", null, false);
                    }
                } else {
                    choicerow.getCells().add(gen.new Cell(null, null, tail(element.getPath()).replace("[x]", Utilities.capitalize(t)), sd.getDescription(), null));
                    choicerow.getCells().add(gen.new Cell());
                    choicerow.getCells().add(gen.new Cell(null, null, "", null, null));
                    choicerow.setIcon("icon_datatype.gif", HierarchicalTableGenerator.TEXT_ICON_DATATYPE);
                    Cell c = gen.new Cell(null, pkp.getLinkFor(corePath, t), sd.getType(), null, null);
                    choicerow.getCells().add(c);
                    if (!mustSupportMode && isMustSupport(tr) && element.getMustSupport()) {
                        c.addPiece(gen.new Piece(null, " ", null));
                        c.addStyledText(translate("sd.table", "This type must be supported"), "S", "white", "red", null, false);
                    }
                }
                if (tr.hasProfile()) {
                    Cell typeCell = choicerow.getCells().get(3);
                    typeCell.addPiece(gen.new Piece(null, "(", null));
                    boolean first = true;
                    for (CanonicalType pt : tr.getProfile()) {
                        if (!mustSupportMode || allProfilesMustSupport(tr.getProfile()) || isMustSupport(pt)) {
                            if (first)
                                first = false;
                            else
                                typeCell.addPiece(gen.new Piece(null, " | ", null));
                            StructureDefinition psd = context.fetchResource(StructureDefinition.class, pt.getValue());
                            if (psd == null)
                                typeCell.addPiece(gen.new Piece(null, "?gen-e2?", null));
                            else
                                typeCell.addPiece(gen.new Piece(psd.getUserString("path"), psd.getName(), psd.present()));
                            if (!mustSupportMode && isMustSupport(pt) && element.getMustSupport()) {
                                typeCell.addPiece(gen.new Piece(null, " ", null));
                                typeCell.addStyledText(translate("sd.table", "This profile must be supported"), "S", "white", "red", null, false);
                            }
                        }
                    }
                    typeCell.addPiece(gen.new Piece(null, ")", null));
                }
            }
            choicerow.getCells().add(gen.new Cell());
            subRows.add(choicerow);
        }
    }
}

Example 30 with CanonicalType

use of org.hl7.fhir.r5.model.CanonicalType in project org.hl7.fhir.core by hapifhir.

the class BaseWorkerContext method addDependentResources.

private boolean addDependentResources(Parameters pin, ConceptSetComponent inc) {
    boolean cache = false;
    for (CanonicalType c : inc.getValueSet()) {
        ValueSet vs = fetchResource(ValueSet.class, c.getValue());
        if (vs != null) {
            pin.addParameter().setName("tx-resource").setResource(vs);
            if (isTxCaching && cacheId == null || !cached.contains(vs.getVUrl())) {
                cached.add(vs.getVUrl());
                cache = true;
            }
            addDependentResources(pin, vs);
        }
    }
    CodeSystem cs = fetchResource(CodeSystem.class, inc.getSystem());
    if (cs != null) {
        pin.addParameter().setName("tx-resource").setResource(cs);
        if (isTxCaching && cacheId == null || !cached.contains(cs.getVUrl())) {
            cached.add(cs.getVUrl());
            cache = true;
        }
    // todo: supplements
    }
    return cache;
}