Examples with ConceptDefinitionComponent org.hl7.fhir.r5.model.CodeSystem.ConceptDefinitionComponent used on opensource projects

Example 16 with ConceptDefinitionComponent

use of org.hl7.fhir.r5.model.CodeSystem.ConceptDefinitionComponent in project org.hl7.fhir.core by hapifhir.

the class NarrativeGenerator method genInclude.

private boolean genInclude(XhtmlNode ul, ConceptSetComponent inc, String type) {
    boolean hasExtensions = false;
    XhtmlNode li;
    li = ul.addTag("li");
    CodeSystem e = context.fetchCodeSystem(inc.getSystem());
    if (inc.getConcept().size() == 0 && inc.getFilter().size() == 0) {
        li.addText(type + " all codes defined in ");
        addCsRef(inc, li, e);
    } else {
        if (inc.getConcept().size() > 0) {
            li.addText(type + " these codes as defined in ");
            addCsRef(inc, li, e);
            XhtmlNode t = li.addTag("table");
            boolean hasComments = false;
            boolean hasDefinition = false;
            for (ConceptReferenceComponent c : inc.getConcept()) {
                hasComments = hasComments || ExtensionHelper.hasExtension(c, ToolingExtensions.EXT_COMMENT);
                hasDefinition = hasDefinition || ExtensionHelper.hasExtension(c, ToolingExtensions.EXT_DEFINITION);
            }
            if (hasComments || hasDefinition)
                hasExtensions = true;
            addTableHeaderRowStandard(t, false, true, hasDefinition, hasComments, false);
            for (ConceptReferenceComponent c : inc.getConcept()) {
                XhtmlNode tr = t.addTag("tr");
                tr.addTag("td").addText(c.getCode());
                ConceptDefinitionComponent cc = getConceptForCode(e, c.getCode(), inc.getSystem());
                XhtmlNode td = tr.addTag("td");
                if (!Utilities.noString(c.getDisplay()))
                    td.addText(c.getDisplay());
                else if (cc != null && !Utilities.noString(cc.getDisplay()))
                    td.addText(cc.getDisplay());
                td = tr.addTag("td");
                if (ExtensionHelper.hasExtension(c, ToolingExtensions.EXT_DEFINITION))
                    smartAddText(td, ToolingExtensions.readStringExtension(c, ToolingExtensions.EXT_DEFINITION));
                else if (cc != null && !Utilities.noString(cc.getDefinition()))
                    smartAddText(td, cc.getDefinition());
                if (ExtensionHelper.hasExtension(c, ToolingExtensions.EXT_COMMENT)) {
                    smartAddText(tr.addTag("td"), "Note: " + ToolingExtensions.readStringExtension(c, ToolingExtensions.EXT_COMMENT));
                }
            }
        }
        boolean first = true;
        for (ConceptSetFilterComponent f : inc.getFilter()) {
            if (first) {
                li.addText(type + " codes from ");
                first = false;
            } else
                li.addText(" and ");
            addCsRef(inc, li, e);
            li.addText(" where " + f.getProperty() + " " + describe(f.getOp()) + " ");
            if (e != null && codeExistsInValueSet(e, f.getValue())) {
                XhtmlNode a = li.addTag("a");
                a.addText(f.getValue());
                a.setAttribute("href", prefix + getCsRef(e) + "#" + Utilities.nmtokenize(f.getValue()));
            } else
                li.addText(f.getValue());
            String disp = ToolingExtensions.getDisplayHint(f);
            if (disp != null)
                li.addText(" (" + disp + ")");
        }
    }
    return hasExtensions;
}

Example 17 with ConceptDefinitionComponent

use of org.hl7.fhir.r5.model.CodeSystem.ConceptDefinitionComponent in project org.hl7.fhir.core by hapifhir.

the class CodeSystemUtilities method setAbstract.

public static void setAbstract(CodeSystem cs, ConceptDefinitionComponent concept) {
    defineAbstractProperty(cs);
    concept.addProperty().setCode("abstract").setValue(new BooleanType(true));
}

Example 18 with ConceptDefinitionComponent

use of org.hl7.fhir.r5.model.CodeSystem.ConceptDefinitionComponent in project org.hl7.fhir.core by hapifhir.

the class ICPC2Importer method processClass.

private void processClass(Element cls, Map<String, ConceptDefinitionComponent> concepts, CodeSystem define) {
    ConceptDefinitionComponent concept = new ConceptDefinitionComponent();
    concept.setCode(cls.getAttribute("code"));
    concept.setDefinition(getRubric(cls, "preferred"));
    String s = getRubric(cls, "shortTitle");
    if (s != null && !s.equals(concept.getDefinition()))
        concept.addDesignation().setUse(new Coding().setSystem("http://hl7.org/fhir/sid/icpc2/rubrics").setCode("shortTitle")).setValue(s);
    s = getRubric(cls, "inclusion");
    if (s != null)
        concept.addDesignation().setUse(new Coding().setSystem("http://hl7.org/fhir/sid/icpc2/rubrics").setCode("inclusion")).setValue(s);
    s = getRubric(cls, "exclusion");
    if (s != null)
        concept.addDesignation().setUse(new Coding().setSystem("http://hl7.org/fhir/sid/icpc2/rubrics").setCode("exclusion")).setValue(s);
    s = getRubric(cls, "criteria");
    if (s != null)
        concept.addDesignation().setUse(new Coding().setSystem("http://hl7.org/fhir/sid/icpc2/rubrics").setCode("criteria")).setValue(s);
    s = getRubric(cls, "consider");
    if (s != null)
        concept.addDesignation().setUse(new Coding().setSystem("http://hl7.org/fhir/sid/icpc2/rubrics").setCode("consider")).setValue(s);
    s = getRubric(cls, "note");
    if (s != null)
        concept.addDesignation().setUse(new Coding().setSystem("http://hl7.org/fhir/sid/icpc2/rubrics").setCode("note")).setValue(s);
    concepts.put(concept.getCode(), concept);
    List<Element> children = new ArrayList<Element>();
    XMLUtil.getNamedChildren(cls, "SubClass", children);
    if (children.size() > 0)
        CodeSystemUtilities.setAbstract(define, concept);
    Element parent = XMLUtil.getNamedChild(cls, "SuperClass");
    if (parent == null) {
        define.addConcept(concept);
    } else {
        ConceptDefinitionComponent p = concepts.get(parent.getAttribute("code"));
        p.getConcept().add(concept);
    }
}

Example 19 with ConceptDefinitionComponent

use of org.hl7.fhir.r5.model.CodeSystem.ConceptDefinitionComponent in project org.hl7.fhir.core by hapifhir.

the class ValueSet10_30 method convertCodeSystemConcept.

public static ValueSet.ConceptDefinitionComponent convertCodeSystemConcept(CodeSystem cs, ConceptDefinitionComponent src) throws FHIRException {
    if (src == null || src.isEmpty())
        return null;
    ValueSet.ConceptDefinitionComponent tgt = new ValueSet.ConceptDefinitionComponent();
    ConversionContext10_30.INSTANCE.getVersionConvertor_10_30().copyElement(src, tgt);
    tgt.setAbstract(CodeSystemUtilities.isNotSelectable(cs, src));
    tgt.setCode(src.getCode());
    tgt.setDefinition(src.getDefinition());
    tgt.setDisplay(src.getDisplay());
    for (ConceptDefinitionComponent cc : src.getConcept()) tgt.addConcept(convertCodeSystemConcept(cs, cc));
    for (CodeSystem.ConceptDefinitionDesignationComponent cc : src.getDesignation()) tgt.addDesignation(convertCodeSystemDesignation(cc));
    return tgt;
}

Example 20 with ConceptDefinitionComponent

use of org.hl7.fhir.r5.model.CodeSystem.ConceptDefinitionComponent in project org.hl7.fhir.core by hapifhir.

the class ValueSet10_50 method processConcept.

public static void processConcept(List<ConceptDefinitionComponent> concepts, org.hl7.fhir.dstu2.model.ValueSet.ConceptDefinitionComponent cs, CodeSystem tgtcs) throws FHIRException {
    org.hl7.fhir.r5.model.CodeSystem.ConceptDefinitionComponent ct = new org.hl7.fhir.r5.model.CodeSystem.ConceptDefinitionComponent();
    concepts.add(ct);
    ct.setCode(cs.getCode());
    ct.setDisplay(cs.getDisplay());
    ct.setDefinition(cs.getDefinition());
    if (cs.getAbstract())
        CodeSystemUtilities.setNotSelectable(tgtcs, ct);
    for (org.hl7.fhir.dstu2.model.ValueSet.ConceptDefinitionDesignationComponent csd : cs.getDesignation()) {
        org.hl7.fhir.r5.model.CodeSystem.ConceptDefinitionDesignationComponent cst = new org.hl7.fhir.r5.model.CodeSystem.ConceptDefinitionDesignationComponent();
        cst.setLanguage(csd.getLanguage());
        cst.setUse(Coding10_50.convertCoding(csd.getUse()));
        cst.setValue(csd.getValue());
    }
    for (org.hl7.fhir.dstu2.model.ValueSet.ConceptDefinitionComponent csc : cs.getConcept()) processConcept(ct.getConcept(), csc, tgtcs);
}