Examples with ConceptDefinitionComponent org.hl7.fhir.r5.model.CodeSystem.ConceptDefinitionComponent used on opensource projects

Example 31 with ConceptDefinitionComponent

use of org.hl7.fhir.r5.model.CodeSystem.ConceptDefinitionComponent in project org.hl7.fhir.core by hapifhir.

the class NarrativeGenerator method genInclude.

private boolean genInclude(ResourceContext rcontext, XhtmlNode ul, ConceptSetComponent inc, String type, List<String> langs) throws FHIRException {
    boolean hasExtensions = false;
    XhtmlNode li;
    li = ul.li();
    CodeSystem e = context.fetchCodeSystem(inc.getSystem());
    if (inc.hasSystem()) {
        if (inc.getConcept().size() == 0 && inc.getFilter().size() == 0) {
            li.addText(type + " all codes defined in ");
            addCsRef(inc, li, e);
        } else {
            if (inc.getConcept().size() > 0) {
                li.addText(type + " these codes as defined in ");
                addCsRef(inc, li, e);
                XhtmlNode t = li.table("none");
                boolean hasComments = false;
                boolean hasDefinition = false;
                for (ConceptReferenceComponent c : inc.getConcept()) {
                    hasComments = hasComments || ExtensionHelper.hasExtension(c, ToolingExtensions.EXT_VS_COMMENT);
                    hasDefinition = hasDefinition || ExtensionHelper.hasExtension(c, ToolingExtensions.EXT_DEFINITION);
                }
                if (hasComments || hasDefinition)
                    hasExtensions = true;
                addTableHeaderRowStandard(t, false, true, hasDefinition, hasComments, false);
                for (ConceptReferenceComponent c : inc.getConcept()) {
                    XhtmlNode tr = t.tr();
                    XhtmlNode td = tr.td();
                    ConceptDefinitionComponent cc = getConceptForCode(e, c.getCode(), inc);
                    addCodeToTable(false, inc.getSystem(), c.getCode(), c.hasDisplay() ? c.getDisplay() : cc != null ? cc.getDisplay() : "", td);
                    td = tr.td();
                    if (!Utilities.noString(c.getDisplay()))
                        td.addText(c.getDisplay());
                    else if (cc != null && !Utilities.noString(cc.getDisplay()))
                        td.addText(cc.getDisplay());
                    td = tr.td();
                    if (ExtensionHelper.hasExtension(c, ToolingExtensions.EXT_DEFINITION))
                        smartAddText(td, ToolingExtensions.readStringExtension(c, ToolingExtensions.EXT_DEFINITION));
                    else if (cc != null && !Utilities.noString(cc.getDefinition()))
                        smartAddText(td, cc.getDefinition());
                    if (ExtensionHelper.hasExtension(c, ToolingExtensions.EXT_VS_COMMENT)) {
                        smartAddText(tr.td(), "Note: " + ToolingExtensions.readStringExtension(c, ToolingExtensions.EXT_VS_COMMENT));
                    }
                    for (ConceptReferenceDesignationComponent cd : c.getDesignation()) {
                        if (cd.hasLanguage() && !langs.contains(cd.getLanguage()))
                            langs.add(cd.getLanguage());
                    }
                }
            }
            boolean first = true;
            for (ConceptSetFilterComponent f : inc.getFilter()) {
                if (first) {
                    li.addText(type + " codes from ");
                    first = false;
                } else
                    li.tx(" and ");
                addCsRef(inc, li, e);
                li.tx(" where " + f.getProperty() + " " + describe(f.getOp()) + " ");
                if (e != null && codeExistsInValueSet(e, f.getValue())) {
                    String href = prefix + getCsRef(e);
                    if (href.contains("#"))
                        href = href + "-" + Utilities.nmtokenize(f.getValue());
                    else
                        href = href + "#" + e.getId() + "-" + Utilities.nmtokenize(f.getValue());
                    li.ah(href).addText(f.getValue());
                } else if ("concept".equals(f.getProperty()) && inc.hasSystem()) {
                    li.addText(f.getValue());
                    ValidationResult vr = context.validateCode(inc.getSystem(), f.getValue(), null);
                    if (vr.isOk()) {
                        li.tx(" (" + vr.getDisplay() + ")");
                    }
                } else
                    li.addText(f.getValue());
                String disp = ToolingExtensions.getDisplayHint(f);
                if (disp != null)
                    li.tx(" (" + disp + ")");
            }
        }
        if (inc.hasValueSet()) {
            li.tx(", where the codes are contained in ");
            boolean first = true;
            for (UriType vs : inc.getValueSet()) {
                if (first)
                    first = false;
                else
                    li.tx(", ");
                AddVsRef(rcontext, vs.asStringValue(), li);
            }
        }
    } else {
        li = ul.li();
        li.tx("Import all the codes that are contained in ");
        boolean first = true;
        for (UriType vs : inc.getValueSet()) {
            if (first)
                first = false;
            else
                li.tx(", ");
            AddVsRef(rcontext, vs.asStringValue(), li);
        }
    }
    return hasExtensions;
}

Example 32 with ConceptDefinitionComponent

use of org.hl7.fhir.r5.model.CodeSystem.ConceptDefinitionComponent in project org.hl7.fhir.core by hapifhir.

the class NarrativeGenerator method getConceptForCodeFromExpansion.

private ConceptDefinitionComponent getConceptForCodeFromExpansion(List<ValueSetExpansionContainsComponent> list, String code) {
    for (ValueSetExpansionContainsComponent c : list) {
        if (code.equals(c.getCode())) {
            ConceptDefinitionComponent res = new ConceptDefinitionComponent();
            res.setCode(c.getCode());
            res.setDisplay(c.getDisplay());
            return res;
        }
        ConceptDefinitionComponent v = getConceptForCodeFromExpansion(c.getContains(), code);
        if (v != null)
            return v;
    }
    return null;
}

Example 33 with ConceptDefinitionComponent

use of org.hl7.fhir.r5.model.CodeSystem.ConceptDefinitionComponent in project org.hl7.fhir.core by hapifhir.

the class ValueSetExpanderSimple method addCodeAndDescendents.

private void addCodeAndDescendents(CodeSystem cs, String system, ConceptDefinitionComponent def, ValueSetExpansionContainsComponent parent, Parameters expParams, List<ValueSet> filters, ConceptDefinitionComponent exclusion) throws FHIRException {
    def.checkNoModifiers("Code in Code System", "expanding");
    if (exclusion != null) {
        if (exclusion.getCode().equals(def.getCode()))
            // excluded.
            return;
    }
    if (!CodeSystemUtilities.isDeprecated(cs, def)) {
        ValueSetExpansionContainsComponent np = null;
        boolean abs = CodeSystemUtilities.isNotSelectable(cs, def);
        boolean inc = CodeSystemUtilities.isInactive(cs, def);
        if (canBeHeirarchy || !abs)
            np = addCode(system, def.getCode(), def.getDisplay(), parent, def.getDesignation(), expParams, abs, inc, filters);
        for (ConceptDefinitionComponent c : def.getConcept()) addCodeAndDescendents(cs, system, c, np, expParams, filters, exclusion);
    } else {
        for (ConceptDefinitionComponent c : def.getConcept()) addCodeAndDescendents(cs, system, c, null, expParams, filters, exclusion);
    }
}

Example 34 with ConceptDefinitionComponent

use of org.hl7.fhir.r5.model.CodeSystem.ConceptDefinitionComponent in project org.hl7.fhir.core by hapifhir.

the class CodeSystemUtilities method addOtherChild.

// see http://hl7.org/fhir/R4/codesystem.html#hierachy
public static void addOtherChild(CodeSystem cs, ConceptDefinitionComponent owner, String code) {
    defineChildProperty(cs);
    owner.addProperty().setCode("child").setValue(new CodeType(code));
}

Example 35 with ConceptDefinitionComponent

use of org.hl7.fhir.r5.model.CodeSystem.ConceptDefinitionComponent in project org.hl7.fhir.core by hapifhir.

the class ValueSetCheckerSimple method inComponent.

private boolean inComponent(ConceptSetComponent vsi, String system, String code, boolean only) throws FHIRException {
    for (UriType uri : vsi.getValueSet()) {
        if (inImport(uri.getValue(), system, code))
            return true;
    }
    if (!vsi.hasSystem())
        return false;
    if (only && system == null) {
        // whether we know the system or not, we'll accept the stated codes at face value
        for (ConceptReferenceComponent cc : vsi.getConcept()) if (cc.getCode().equals(code))
            return true;
    }
    if (!system.equals(vsi.getSystem()))
        return false;
    if (vsi.hasFilter()) {
        boolean ok = true;
        for (ConceptSetFilterComponent f : vsi.getFilter()) if (!codeInFilter(system, f, code)) {
            ok = false;
            break;
        }
        if (ok)
            return true;
    }
    CodeSystem def = context.fetchCodeSystem(system);
    if (def.getContent() != CodeSystemContentMode.COMPLETE)
        throw new FHIRException("Unable to resolve system " + vsi.getSystem() + " - system is not complete");
    List<ConceptDefinitionComponent> list = def.getConcept();
    boolean ok = validateCodeInConceptList(code, def, list);
    if (ok && vsi.hasConcept()) {
        for (ConceptReferenceComponent cc : vsi.getConcept()) if (cc.getCode().equals(code))
            return true;
        return false;
    } else
        return ok;
}