Examples with ConceptDefinitionComponent org.hl7.fhir.r5.model.CodeSystem.ConceptDefinitionComponent used on opensource projects

Example 26 with ConceptDefinitionComponent

use of org.hl7.fhir.r5.model.CodeSystem.ConceptDefinitionComponent in project org.hl7.fhir.core by hapifhir.

the class ValueSet10_40 method processConcept.

public static void processConcept(List<ValueSet.ConceptDefinitionComponent> concepts, ConceptDefinitionComponent cs, CodeSystem srcCS) throws FHIRException {
    org.hl7.fhir.dstu2.model.ValueSet.ConceptDefinitionComponent ct = new org.hl7.fhir.dstu2.model.ValueSet.ConceptDefinitionComponent();
    concepts.add(ct);
    ct.setCode(cs.getCode());
    ct.setDisplay(cs.getDisplay());
    ct.setDefinition(cs.getDefinition());
    if (CodeSystemUtilities.isNotSelectable(srcCS, cs))
        ct.setAbstract(true);
    for (org.hl7.fhir.r4.model.CodeSystem.ConceptDefinitionDesignationComponent csd : cs.getDesignation()) {
        org.hl7.fhir.dstu2.model.ValueSet.ConceptDefinitionDesignationComponent cst = new org.hl7.fhir.dstu2.model.ValueSet.ConceptDefinitionDesignationComponent();
        cst.setLanguage(csd.getLanguage());
        cst.setUse(Coding10_40.convertCoding(csd.getUse()));
        cst.setValue(csd.getValue());
    }
    for (ConceptDefinitionComponent csc : cs.getConcept()) processConcept(ct.getConcept(), csc, srcCS);
}

Example 27 with ConceptDefinitionComponent

use of org.hl7.fhir.r5.model.CodeSystem.ConceptDefinitionComponent in project org.hl7.fhir.core by hapifhir.

the class ValueSet10_40 method convertCodeSystemConcept.

public static ValueSet.ConceptDefinitionComponent convertCodeSystemConcept(CodeSystem cs, ConceptDefinitionComponent src) throws FHIRException {
    if (src == null || src.isEmpty())
        return null;
    ValueSet.ConceptDefinitionComponent tgt = new ValueSet.ConceptDefinitionComponent();
    ConversionContext10_40.INSTANCE.getVersionConvertor_10_40().copyElement(src, tgt);
    tgt.setAbstract(CodeSystemUtilities.isNotSelectable(cs, src));
    tgt.setCode(src.getCode());
    tgt.setDefinition(src.getDefinition());
    tgt.setDisplay(src.getDisplay());
    for (ConceptDefinitionComponent cc : src.getConcept()) tgt.addConcept(convertCodeSystemConcept(cs, cc));
    for (CodeSystem.ConceptDefinitionDesignationComponent cc : src.getDesignation()) tgt.addDesignation(convertCodeSystemDesignation(cc));
    return tgt;
}

Example 28 with ConceptDefinitionComponent

use of org.hl7.fhir.r5.model.CodeSystem.ConceptDefinitionComponent in project org.hl7.fhir.core by hapifhir.

the class ValueSet10_40 method processConcept.

public static void processConcept(List<ConceptDefinitionComponent> concepts, org.hl7.fhir.dstu2.model.ValueSet.ConceptDefinitionComponent cs, CodeSystem tgtcs) throws FHIRException {
    org.hl7.fhir.r4.model.CodeSystem.ConceptDefinitionComponent ct = new org.hl7.fhir.r4.model.CodeSystem.ConceptDefinitionComponent();
    concepts.add(ct);
    ct.setCode(cs.getCode());
    ct.setDisplay(cs.getDisplay());
    ct.setDefinition(cs.getDefinition());
    if (cs.getAbstract())
        CodeSystemUtilities.setNotSelectable(tgtcs, ct);
    for (org.hl7.fhir.dstu2.model.ValueSet.ConceptDefinitionDesignationComponent csd : cs.getDesignation()) {
        org.hl7.fhir.r4.model.CodeSystem.ConceptDefinitionDesignationComponent cst = new org.hl7.fhir.r4.model.CodeSystem.ConceptDefinitionDesignationComponent();
        cst.setLanguage(csd.getLanguage());
        cst.setUse(Coding10_40.convertCoding(csd.getUse()));
        cst.setValue(csd.getValue());
    }
    for (org.hl7.fhir.dstu2.model.ValueSet.ConceptDefinitionComponent csc : cs.getConcept()) processConcept(ct.getConcept(), csc, tgtcs);
}

Example 29 with ConceptDefinitionComponent

use of org.hl7.fhir.r5.model.CodeSystem.ConceptDefinitionComponent in project org.hl7.fhir.core by hapifhir.

the class NarrativeGenerator method addDefineRowToTable.

private boolean addDefineRowToTable(XhtmlNode t, ConceptDefinitionComponent c, int i, boolean hasHierarchy, boolean hasDisplay, boolean comment, boolean deprecated, Map<ConceptMap, String> maps, String system, CodeSystem cs) {
    boolean hasExtensions = false;
    XhtmlNode tr = t.addTag("tr");
    XhtmlNode td = tr.addTag("td");
    if (hasHierarchy) {
        td.addText(Integer.toString(i + 1));
        td = tr.addTag("td");
        String s = Utilities.padLeft("", '\u00A0', i * 2);
        td.addText(s);
    }
    td.addText(c.getCode());
    XhtmlNode a;
    if (c.hasCodeElement()) {
        a = td.addTag("a");
        a.setAttribute("name", Utilities.nmtokenize(c.getCode()));
        a.addText(" ");
    }
    if (hasDisplay) {
        td = tr.addTag("td");
        if (c.hasDisplayElement())
            td.addText(c.getDisplay());
    }
    td = tr.addTag("td");
    if (c != null)
        smartAddText(td, c.getDefinition());
    if (deprecated) {
        td = tr.addTag("td");
        Boolean b = CodeSystemUtilities.isDeprecated(cs, c);
        if (b != null && b) {
            smartAddText(td, "Deprecated");
            hasExtensions = true;
            if (ToolingExtensions.hasExtension(c, ToolingExtensions.EXT_REPLACED_BY)) {
                Coding cc = (Coding) ToolingExtensions.getExtension(c, ToolingExtensions.EXT_REPLACED_BY).getValue();
                td.addText(" (replaced by ");
                String url = getCodingReference(cc, system);
                if (url != null) {
                    td.addTag("a").setAttribute("href", url).addText(cc.getCode());
                    td.addText(": " + cc.getDisplay() + ")");
                } else
                    td.addText(cc.getCode() + " '" + cc.getDisplay() + "' in " + cc.getSystem() + ")");
            }
        }
    }
    if (comment) {
        td = tr.addTag("td");
        String s = ToolingExtensions.getComment(c);
        if (s != null) {
            smartAddText(td, s);
            hasExtensions = true;
        }
    }
    for (ConceptMap m : maps.keySet()) {
        td = tr.addTag("td");
        List<TargetElementComponent> mappings = findMappingsForCode(c.getCode(), m);
        boolean first = true;
        for (TargetElementComponent mapping : mappings) {
            if (!first)
                td.addTag("br");
            first = false;
            XhtmlNode span = td.addTag("span");
            span.setAttribute("title", mapping.hasEquivalence() ? mapping.getEquivalence().toCode() : "");
            span.addText(getCharForEquivalence(mapping));
            a = td.addTag("a");
            a.setAttribute("href", prefix + maps.get(m) + "#" + makeAnchor(mapping.getSystem(), mapping.getCode()));
            a.addText(mapping.getCode());
            if (!Utilities.noString(mapping.getComments()))
                td.addTag("i").addText("(" + mapping.getComments() + ")");
        }
    }
    for (CodeType e : ToolingExtensions.getSubsumes(c)) {
        hasExtensions = true;
        tr = t.addTag("tr");
        td = tr.addTag("td");
        String s = Utilities.padLeft("", '.', i * 2);
        td.addText(s);
        a = td.addTag("a");
        a.setAttribute("href", "#" + Utilities.nmtokenize(e.getValue()));
        a.addText(c.getCode());
    }
    for (ConceptDefinitionComponent cc : c.getConcept()) {
        hasExtensions = addDefineRowToTable(t, cc, i + 1, hasHierarchy, hasDisplay, comment, deprecated, maps, system, cs) || hasExtensions;
    }
    return hasExtensions;
}

Example 30 with ConceptDefinitionComponent

use of org.hl7.fhir.r5.model.CodeSystem.ConceptDefinitionComponent in project org.hl7.fhir.core by hapifhir.

the class NarrativeGenerator method generateDefinition.

private boolean generateDefinition(XhtmlNode x, CodeSystem cs, boolean header) {
    boolean hasExtensions = false;
    Map<ConceptMap, String> mymaps = new HashMap<ConceptMap, String>();
    for (ConceptMap a : context.findMapsForSource(cs.getValueSet())) {
        String url = "";
        ValueSet vsr = context.fetchResource(ValueSet.class, ((Reference) a.getTarget()).getReference());
        if (vsr != null)
            url = (String) vsr.getUserData("filename");
        mymaps.put(a, url);
    }
    // also, look in the contained resources for a concept map
    for (Resource r : cs.getContained()) {
        if (r instanceof ConceptMap) {
            ConceptMap cm = (ConceptMap) r;
            if (((Reference) cm.getSource()).getReference().equals(cs.getValueSet())) {
                String url = "";
                ValueSet vsr = context.fetchResource(ValueSet.class, ((Reference) cm.getTarget()).getReference());
                if (vsr != null)
                    url = (String) vsr.getUserData("filename");
                mymaps.put(cm, url);
            }
        }
    }
    List<String> langs = new ArrayList<String>();
    if (header) {
        XhtmlNode h = x.addTag("h2");
        h.addText(cs.getName());
        XhtmlNode p = x.addTag("p");
        smartAddText(p, cs.getDescription());
        if (cs.hasCopyright())
            generateCopyright(x, cs);
    }
    XhtmlNode p = x.addTag("p");
    p.addText("This code system " + cs.getUrl() + " defines the following codes:");
    XhtmlNode t = x.addTag("table").setAttribute("class", "codes");
    boolean commentS = false;
    boolean deprecated = false;
    boolean display = false;
    boolean hierarchy = false;
    for (ConceptDefinitionComponent c : cs.getConcept()) {
        commentS = commentS || conceptsHaveComments(c);
        deprecated = deprecated || conceptsHaveDeprecated(cs, c);
        display = display || conceptsHaveDisplay(c);
        hierarchy = hierarchy || c.hasConcept();
        scanLangs(c, langs);
    }
    addMapHeaders(addTableHeaderRowStandard(t, hierarchy, display, true, commentS, deprecated), mymaps);
    for (ConceptDefinitionComponent c : cs.getConcept()) {
        hasExtensions = addDefineRowToTable(t, c, 0, hierarchy, display, commentS, deprecated, mymaps, cs.getUrl(), cs) || hasExtensions;
    }
    if (langs.size() > 0) {
        Collections.sort(langs);
        x.addTag("p").addTag("b").addText("Additional Language Displays");
        t = x.addTag("table").setAttribute("class", "codes");
        XhtmlNode tr = t.addTag("tr");
        tr.addTag("td").addTag("b").addText("Code");
        for (String lang : langs) tr.addTag("td").addTag("b").addText(lang);
        for (ConceptDefinitionComponent c : cs.getConcept()) {
            addLanguageRow(c, t, langs);
        }
    }
    return hasExtensions;
}