Examples with ConceptDefinitionComponent org.hl7.fhir.r5.model.CodeSystem.ConceptDefinitionComponent used on opensource projects

Example 46 with ConceptDefinitionComponent

use of org.hl7.fhir.r5.model.CodeSystem.ConceptDefinitionComponent in project org.hl7.fhir.core by hapifhir.

the class CodeSystemUtilities method setStatus.

public static void setStatus(CodeSystem cs, ConceptDefinitionComponent concept, ConceptStatus status) throws FHIRFormatError {
    defineStatusProperty(cs);
    ConceptPropertyComponent p = getProperty(concept, "status");
    if (p != null)
        p.setValue(new CodeType(status.toCode()));
    else
        concept.addProperty().setCode("status").setValue(new CodeType(status.toCode()));
}

Example 47 with ConceptDefinitionComponent

use of org.hl7.fhir.r5.model.CodeSystem.ConceptDefinitionComponent in project org.hl7.fhir.core by hapifhir.

the class CodeSystemUtilities method setNotSelectable.

public static void setNotSelectable(CodeSystem cs, ConceptDefinitionComponent concept) throws FHIRFormatError {
    defineNotSelectableProperty(cs);
    ConceptPropertyComponent p = getProperty(concept, "notSelectable");
    if (p != null)
        p.setValue(new BooleanType(true));
    else
        concept.addProperty().setCode("notSelectable").setValue(new BooleanType(true));
}

Example 48 with ConceptDefinitionComponent

use of org.hl7.fhir.r5.model.CodeSystem.ConceptDefinitionComponent in project org.hl7.fhir.core by hapifhir.

the class ValueSetExpanderSimple method includeCodes.

private void includeCodes(ConceptSetComponent inc, List<ValueSetExpansionParameterComponent> params, ExpansionProfile profile) throws ETooCostly, FileNotFoundException, IOException, FHIRException {
    List<ValueSet> imports = new ArrayList<ValueSet>();
    for (UriType imp : inc.getValueSet()) imports.add(importValueSet(imp.getValue(), params, profile));
    if (!inc.hasSystem()) {
        if (// though this is not supposed to be the case
        imports.isEmpty())
            return;
        ValueSet base = imports.get(0);
        imports.remove(0);
        copyImportContains(base.getExpansion().getContains(), null, profile, imports);
    } else {
        CodeSystem cs = context.fetchCodeSystem(inc.getSystem());
        if ((cs == null || cs.getContent() != CodeSystemContentMode.COMPLETE) && context.supportsSystem(inc.getSystem())) {
            addCodes(context.expandVS(inc, canBeHeirarchy), params, profile, imports);
            return;
        }
        if (cs == null) {
            if (context.isNoTerminologyServer())
                throw new NoTerminologyServiceException("unable to find code system " + inc.getSystem().toString());
            else
                throw new TerminologyServiceException("unable to find code system " + inc.getSystem().toString());
        }
        if (cs.getContent() != CodeSystemContentMode.COMPLETE)
            throw new TerminologyServiceException("Code system " + inc.getSystem().toString() + " is incomplete");
        if (cs.hasVersion())
            if (!existsInParams(params, "version", new UriType(cs.getUrl() + "|" + cs.getVersion())))
                params.add(new ValueSetExpansionParameterComponent().setName("version").setValue(new UriType(cs.getUrl() + "|" + cs.getVersion())));
        if (inc.getConcept().size() == 0 && inc.getFilter().size() == 0) {
            // special case - add all the code system
            for (ConceptDefinitionComponent def : cs.getConcept()) {
                addCodeAndDescendents(cs, inc.getSystem(), def, null, profile, imports);
            }
        }
        if (!inc.getConcept().isEmpty()) {
            canBeHeirarchy = false;
            for (ConceptReferenceComponent c : inc.getConcept()) {
                addCode(inc.getSystem(), c.getCode(), Utilities.noString(c.getDisplay()) ? getCodeDisplay(cs, c.getCode()) : c.getDisplay(), null, convertDesignations(c.getDesignation()), profile, false, CodeSystemUtilities.isInactive(cs, c.getCode()), imports);
            }
        }
        if (inc.getFilter().size() > 1) {
            // which will bt the case if we get around to supporting this
            canBeHeirarchy = false;
            // need to and them, and this isn't done yet. But this shouldn't arise in non loinc and snomed value sets
            throw new TerminologyServiceException("Multiple filters not handled yet");
        }
        if (inc.getFilter().size() == 1) {
            ConceptSetFilterComponent fc = inc.getFilter().get(0);
            if ("concept".equals(fc.getProperty()) && fc.getOp() == FilterOperator.ISA) {
                // special: all codes in the target code system under the value
                ConceptDefinitionComponent def = getConceptForCode(cs.getConcept(), fc.getValue());
                if (def == null)
                    throw new TerminologyServiceException("Code '" + fc.getValue() + "' not found in system '" + inc.getSystem() + "'");
                addCodeAndDescendents(cs, inc.getSystem(), def, null, profile, imports);
            } else if ("concept".equals(fc.getProperty()) && fc.getOp() == FilterOperator.DESCENDENTOF) {
                // special: all codes in the target code system under the value
                ConceptDefinitionComponent def = getConceptForCode(cs.getConcept(), fc.getValue());
                if (def == null)
                    throw new TerminologyServiceException("Code '" + fc.getValue() + "' not found in system '" + inc.getSystem() + "'");
                for (ConceptDefinitionComponent c : def.getConcept()) addCodeAndDescendents(cs, inc.getSystem(), c, null, profile, imports);
            } else if ("display".equals(fc.getProperty()) && fc.getOp() == FilterOperator.EQUAL) {
                // gg; note: wtf is this: if the filter is display=v, look up the code 'v', and see if it's diplsay is 'v'?
                canBeHeirarchy = false;
                ConceptDefinitionComponent def = getConceptForCode(cs.getConcept(), fc.getValue());
                if (def != null) {
                    if (isNotBlank(def.getDisplay()) && isNotBlank(fc.getValue())) {
                        if (def.getDisplay().contains(fc.getValue())) {
                            addCode(inc.getSystem(), def.getCode(), def.getDisplay(), null, def.getDesignation(), profile, CodeSystemUtilities.isNotSelectable(cs, def), CodeSystemUtilities.isInactive(cs, def), imports);
                        }
                    }
                }
            } else
                throw new NotImplementedException("Search by property[" + fc.getProperty() + "] and op[" + fc.getOp() + "] is not supported yet");
        }
    }
}

Example 49 with ConceptDefinitionComponent

use of org.hl7.fhir.r5.model.CodeSystem.ConceptDefinitionComponent in project org.hl7.fhir.core by hapifhir.

the class CodeSystemComparer method addRow.

private void addRow(HierarchicalTableGenerator gen, List<Row> rows, StructuralMatch<ConceptDefinitionComponent> t, CodeSystemComparison comparison) {
    Row r = gen.new Row();
    rows.add(r);
    r.getCells().add(gen.new Cell(null, null, t.either().getCode(), null, null));
    if (t.hasLeft() && t.hasRight()) {
        if (t.getLeft().hasDisplay() && t.getRight().hasDisplay()) {
            if (t.getLeft().getDisplay().equals(t.getRight().getDisplay())) {
                r.getCells().add(gen.new Cell(null, null, t.getLeft().getDisplay(), null, null).span(2));
            } else {
                r.getCells().add(gen.new Cell(null, null, t.getLeft().getDisplay(), null, null).setStyle("background-color: " + COLOR_DIFFERENT));
                r.getCells().add(gen.new Cell(null, null, t.getRight().getDisplay(), null, null).setStyle("background-color: " + COLOR_DIFFERENT));
            }
        } else if (t.getLeft().hasDisplay()) {
            r.getCells().add(gen.new Cell(null, null, t.getLeft().getDisplay(), null, null));
            r.getCells().add(missingCell(gen, COLOR_NO_CELL_RIGHT));
        } else if (t.getRight().hasDisplay()) {
            r.getCells().add(missingCell(gen, COLOR_NO_CELL_LEFT));
            r.getCells().add(gen.new Cell(null, null, t.getRight().getDisplay(), null, null));
        } else {
            r.getCells().add(missingCell(gen).span(2));
        }
        for (PropertyComponent p : comparison.getUnion().getProperty()) {
            ConceptPropertyComponent lp = getProp(t.getLeft(), p, false, comparison);
            ConceptPropertyComponent rp = getProp(t.getRight(), p, true, comparison);
            if (lp != null && rp != null) {
                if (lp.getValue().equals(rp.getValue())) {
                    r.getCells().add(gen.new Cell(null, null, t.getLeft().getDisplay(), null, null).span(2));
                } else {
                    r.getCells().add(gen.new Cell(null, null, lp.getValue().toString(), null, null));
                    r.getCells().add(gen.new Cell(null, null, rp.getValue().toString(), null, null));
                }
            } else if (lp != null) {
                r.getCells().add(gen.new Cell(null, null, lp.getValue().toString(), null, null));
                r.getCells().add(missingCell(gen, COLOR_NO_CELL_RIGHT));
            } else if (rp != null) {
                r.getCells().add(missingCell(gen, COLOR_NO_CELL_LEFT));
                r.getCells().add(gen.new Cell(null, null, rp.getValue().toString(), null, null));
            } else {
                r.getCells().add(missingCell(gen).span(2));
            }
        }
    } else if (t.hasLeft()) {
        r.setColor(COLOR_NO_ROW_RIGHT);
        r.getCells().add(gen.new Cell(null, null, t.either().getDisplay(), null, null));
        r.getCells().add(missingCell(gen));
        for (PropertyComponent p : comparison.getUnion().getProperty()) {
            r.getCells().add(propertyCell(gen, t.getLeft(), p, false, comparison));
            r.getCells().add(missingCell(gen));
        }
    } else {
        r.setColor(COLOR_NO_ROW_LEFT);
        r.getCells().add(missingCell(gen));
        r.getCells().add(gen.new Cell(null, null, t.either().getDisplay(), null, null));
        for (PropertyComponent p : comparison.getUnion().getProperty()) {
            r.getCells().add(missingCell(gen));
            r.getCells().add(propertyCell(gen, t.getLeft(), p, true, comparison));
        }
    }
    r.getCells().add(cellForMessages(gen, t.getMessages()));
}

Example 50 with ConceptDefinitionComponent

use of org.hl7.fhir.r5.model.CodeSystem.ConceptDefinitionComponent in project org.hl7.fhir.core by hapifhir.

the class CodeSystemComparer method getProp.

public ConceptPropertyComponent getProp(ConceptDefinitionComponent cd, PropertyComponent p, boolean right, CodeSystemComparison comp) {
    String c = p.getCode();
    if (right) {
        c = comp.getPropMap().get(c);
    }
    ConceptPropertyComponent cp = null;
    if (cd != null) {
        for (ConceptPropertyComponent t : cd.getProperty()) {
            if (t.getCode().equals(c)) {
                cp = t;
            }
        }
    }
    return cp;
}