Examples with Composition org.hl7.fhir.r5.model.Composition used on opensource projects

Example 21 with Composition

use of org.hl7.fhir.r5.model.Composition in project org.hl7.fhir.core by hapifhir.

the class BundleRenderer method render.

public XhtmlNode render(Bundle b) throws FHIRFormatError, DefinitionException, IOException, FHIRException, EOperationOutcome {
    if (b.getType() == BundleType.DOCUMENT) {
        if (!b.hasEntry() || !(b.getEntryFirstRep().hasResource() && b.getEntryFirstRep().getResource() instanceof Composition)) {
            throw new FHIRException("Invalid document - first entry is not a Composition");
        }
        XhtmlNode x = new XhtmlNode(NodeType.Element, "div");
        renderDocument(x, b);
        return x;
    } else if ((b.getType() == BundleType.COLLECTION && allEntresAreHistoryProvenance(b))) {
        return null;
    } else {
        XhtmlNode root = new XhtmlNode(NodeType.Element, "div");
        root.para().addText(formatMessage(RENDER_BUNDLE_HEADER_ROOT, b.getId(), b.getType().toCode()));
        int i = 0;
        for (BundleEntryComponent be : b.getEntry()) {
            i++;
            if (be.hasFullUrl())
                root.an(makeInternalBundleLink(be.getFullUrl()));
            if (be.hasResource() && be.getResource().hasId())
                root.an(be.getResource().getResourceType().name() + "_" + be.getResource().getId());
            root.hr();
            if (be.hasFullUrl()) {
                root.para().addText(formatMessage(RENDER_BUNDLE_HEADER_ENTRY_URL, Integer.toString(i), be.getFullUrl()));
            } else {
                root.para().addText(formatMessage(RENDER_BUNDLE_HEADER_ENTRY, Integer.toString(i)));
            }
            if (be.hasRequest())
                renderRequest(root, be.getRequest());
            if (be.hasSearch())
                renderSearch(root, be.getSearch());
            if (be.hasResponse())
                renderResponse(root, be.getResponse());
            if (be.hasResource()) {
                root.para().addText(formatMessage(RENDER_BUNDLE_RESOURCE, be.getResource().fhirType()));
                if (be.hasResource()) {
                    XhtmlNode xn = null;
                    if (be.getResource() instanceof DomainResource) {
                        DomainResource dr = (DomainResource) be.getResource();
                        xn = dr.getText().getDiv();
                    }
                    if (xn == null || xn.isEmpty()) {
                        ResourceRenderer rr = RendererFactory.factory(be.getResource(), context);
                        try {
                            xn = rr.build(be.getResource());
                        } catch (Exception e) {
                            xn = makeExceptionXhtml(e, "generating narrative");
                        }
                    }
                    root.blockquote().para().getChildNodes().addAll(checkInternalLinks(b, xn.getChildNodes()));
                }
            }
        }
        return root;
    }
}

Example 22 with Composition

use of org.hl7.fhir.r5.model.Composition in project org.hl7.fhir.core by hapifhir.

the class BundleRenderer method render.

@Override
public boolean render(XhtmlNode x, ResourceWrapper b) throws FHIRFormatError, DefinitionException, IOException, FHIRException, EOperationOutcome {
    List<BaseWrapper> entries = b.children("entry");
    if ("document".equals(b.get("type").primitiveValue())) {
        if (entries.isEmpty() || (entries.get(0).has("resource") && !"Composition".equals(entries.get(0).get("resource").fhirType())))
            throw new FHIRException("Invalid document '" + b.getId() + "' - first entry is not a Composition ('" + entries.get(0).get("resource").fhirType() + "')");
        return renderDocument(x, b, entries);
    } else if ("collection".equals(b.get("type").primitiveValue()) && allEntriesAreHistoryProvenance(entries)) {
    // nothing
    } else {
        XhtmlNode root = new XhtmlNode(NodeType.Element, "div");
        root.para().addText(formatMessage(RENDER_BUNDLE_HEADER_ROOT, b.getId(), b.get("type").primitiveValue()));
        int i = 0;
        for (BaseWrapper be : entries) {
            i++;
            if (be.has("fullUrl")) {
                root.an(makeInternalBundleLink(be.get("fullUrl").primitiveValue()));
            }
            if (be.has("resource") && be.getChildByName("resource").getValues().get(0).has("id")) {
                root.an(be.get("resource").fhirType() + "_" + be.getChildByName("resource").getValues().get(0).get("id").primitiveValue());
            }
            root.hr();
            if (be.has("fullUrl")) {
                root.para().addText(formatMessage(RENDER_BUNDLE_HEADER_ENTRY_URL, Integer.toString(i), be.get("fullUrl").primitiveValue()));
            } else {
                root.para().addText(formatMessage(RENDER_BUNDLE_HEADER_ENTRY, Integer.toString(i)));
            }
            // renderResponse(root, be.getResponse());
            if (be.has("resource")) {
                root.para().addText(formatMessage(RENDER_BUNDLE_RESOURCE, be.get("resource").fhirType()));
                ResourceWrapper rw = be.getChildByName("resource").getAsResource();
                XhtmlNode xn = rw.getNarrative();
                if (xn == null || xn.isEmpty()) {
                    ResourceRenderer rr = RendererFactory.factory(rw, context);
                    try {
                        xn = rr.render(rw);
                    } catch (Exception e) {
                        xn = new XhtmlNode();
                        xn.para().b().tx("Exception generating narrative: " + e.getMessage());
                    }
                }
                root.blockquote().para().addChildren(xn);
            }
        }
    }
    return false;
}

Example 23 with Composition

use of org.hl7.fhir.r5.model.Composition in project org.hl7.fhir.core by hapifhir.

the class BundleValidator method validateDocumentReference.

public void validateDocumentReference(List<ValidationMessage> errors, List<Element> entries, Element composition, NodeStack stack, String fullUrl, String id, boolean repeats, String propName, String title) {
    if (repeats) {
        List<Element> list = new ArrayList<>();
        composition.getNamedChildren(propName, list);
        int i = 1;
        for (Element elem : list) {
            validateBundleReference(errors, entries, elem, title + "." + propName, stack.push(elem, i, null, null), fullUrl, "Composition", id);
            i++;
        }
    } else {
        Element elem = composition.getNamedChild(propName);
        if (elem != null) {
            validateBundleReference(errors, entries, elem, title + "." + propName, stack.push(elem, -1, null, null), fullUrl, "Composition", id);
        }
    }
}

Example 24 with Composition

use of org.hl7.fhir.r5.model.Composition in project fhir-bridge by ehrbase.

the class BloodPressureCompositionConverter method mapKategorie.

private void mapKategorie(BlutdruckComposition composition, Observation resource) {
    List<BlutdruckKategorieElement> list = new ArrayList<>();
    for (CodeableConcept category : resource.getCategory()) {
        for (Coding coding : category.getCoding()) {
            BlutdruckKategorieElement blutdruckKategorieElement = new BlutdruckKategorieElement();
            blutdruckKategorieElement.setValue(coding.getCode());
            list.add(blutdruckKategorieElement);
        }
    }
    composition.setKategorie(list);
}

Example 25 with Composition

use of org.hl7.fhir.r5.model.Composition in project fhir-bridge by ehrbase.

the class SarsCov2KnownExposureCompositionConverter method mapKategorie.

private void mapKategorie(SARSCoV2ExpositionComposition composition, Observation resource) {
    List<SarsCov2ExpositionKategorieElement> list = new ArrayList<>();
    for (CodeableConcept category : resource.getCategory()) {
        for (Coding coding : category.getCoding()) {
            SarsCov2ExpositionKategorieElement sarsCov2ExpositionKategorieElement = new SarsCov2ExpositionKategorieElement();
            sarsCov2ExpositionKategorieElement.setValue(coding.getCode());
            list.add(sarsCov2ExpositionKategorieElement);
        }
    }
    composition.setKategorie(list);
}