use of org.hl7.fhir.r5.model.ConceptMap.SourceElementComponent in project org.hl7.fhir.core by hapifhir.
the class ConceptMapRenderer method render.
public boolean render(XhtmlNode x, ConceptMap cm) throws FHIRFormatError, DefinitionException, IOException {
x.h2().addText(cm.getName() + " (" + cm.getUrl() + ")");
XhtmlNode p = x.para();
p.tx("Mapping from ");
if (cm.hasSource())
AddVsRef(cm.getSource().primitiveValue(), p);
else
p.tx("(not specified)");
p.tx(" to ");
if (cm.hasTarget())
AddVsRef(cm.getTarget().primitiveValue(), p);
else
p.tx("(not specified)");
p = x.para();
if (cm.getExperimental())
p.addText(Utilities.capitalize(cm.getStatus().toString()) + " (not intended for production usage). ");
else
p.addText(Utilities.capitalize(cm.getStatus().toString()) + ". ");
p.tx("Published on " + (cm.hasDate() ? cm.getDateElement().toHumanDisplay() : "?ngen-10?") + " by " + cm.getPublisher());
if (!cm.getContact().isEmpty()) {
p.tx(" (");
boolean firsti = true;
for (ContactDetail ci : cm.getContact()) {
if (firsti)
firsti = false;
else
p.tx(", ");
if (ci.hasName())
p.addText(ci.getName() + ": ");
boolean first = true;
for (ContactPoint c : ci.getTelecom()) {
if (first)
first = false;
else
p.tx(", ");
addTelecom(p, c);
}
}
p.tx(")");
}
p.tx(". ");
p.addText(cm.getCopyright());
if (!Utilities.noString(cm.getDescription()))
addMarkdown(x, cm.getDescription());
x.br();
CodeSystem cs = getContext().getWorker().fetchCodeSystem("http://hl7.org/fhir/concept-map-relationship");
if (cs == null)
cs = getContext().getWorker().fetchCodeSystem("http://hl7.org/fhir/concept-map-equivalence");
String eqpath = cs == null ? null : cs.getUserString("path");
for (ConceptMapGroupComponent grp : cm.getGroup()) {
String src = grp.getSource();
boolean comment = false;
boolean ok = true;
Map<String, HashSet<String>> sources = new HashMap<String, HashSet<String>>();
Map<String, HashSet<String>> targets = new HashMap<String, HashSet<String>>();
sources.put("code", new HashSet<String>());
targets.put("code", new HashSet<String>());
SourceElementComponent cc = grp.getElement().get(0);
String dst = grp.getTarget();
sources.get("code").add(grp.getSource());
targets.get("code").add(grp.getTarget());
for (SourceElementComponent ccl : grp.getElement()) {
ok = ok && ccl.getTarget().size() == 1 && ccl.getTarget().get(0).getDependsOn().isEmpty() && ccl.getTarget().get(0).getProduct().isEmpty();
for (TargetElementComponent ccm : ccl.getTarget()) {
comment = comment || !Utilities.noString(ccm.getComment());
for (OtherElementComponent d : ccm.getDependsOn()) {
if (!sources.containsKey(d.getProperty()))
sources.put(d.getProperty(), new HashSet<String>());
sources.get(d.getProperty()).add(d.getSystem());
}
for (OtherElementComponent d : ccm.getProduct()) {
if (!targets.containsKey(d.getProperty()))
targets.put(d.getProperty(), new HashSet<String>());
targets.get(d.getProperty()).add(d.getSystem());
}
}
}
String display;
if (ok) {
// simple
XhtmlNode tbl = x.table("grid");
XhtmlNode tr = tbl.tr();
tr.td().b().tx("Source Code");
tr.td().b().tx("Relationship");
tr.td().b().tx("Destination Code");
if (comment)
tr.td().b().tx("Comment");
for (SourceElementComponent ccl : grp.getElement()) {
tr = tbl.tr();
XhtmlNode td = tr.td();
td.addText(ccl.getCode());
display = getDisplayForConcept(systemFromCanonical(grp.getSource()), versionFromCanonical(grp.getSource()), ccl.getCode());
if (display != null && !isSameCodeAndDisplay(ccl.getCode(), display))
td.tx(" (" + display + ")");
TargetElementComponent ccm = ccl.getTarget().get(0);
if (!ccm.hasEquivalence())
tr.td().tx(":" + "(" + ConceptMapEquivalence.NULL.toCode() + ")");
else {
String code = ccm.getEquivalenceElement().primitiveValue();
tr.td().ah(eqpath + "#" + code).tx(presentEquivalenceCode(code));
}
td = tr.td();
td.addText(ccm.getCode());
display = getDisplayForConcept(systemFromCanonical(grp.getTarget()), versionFromCanonical(grp.getTarget()), ccm.getCode());
if (display != null && !isSameCodeAndDisplay(ccm.getCode(), display))
td.tx(" (" + display + ")");
if (comment)
tr.td().addText(ccm.getComment());
addUnmapped(tbl, grp);
}
} else {
boolean hasRelationships = false;
for (int si = 0; si < grp.getElement().size(); si++) {
SourceElementComponent ccl = grp.getElement().get(si);
for (int ti = 0; ti < ccl.getTarget().size(); ti++) {
TargetElementComponent ccm = ccl.getTarget().get(ti);
if (ccm.hasEquivalence()) {
hasRelationships = true;
}
}
}
XhtmlNode tbl = x.table("grid");
XhtmlNode tr = tbl.tr();
XhtmlNode td;
tr.td().colspan(Integer.toString(1 + sources.size())).b().tx("Source Concept Details");
if (hasRelationships) {
tr.td().b().tx("Relationship");
}
tr.td().colspan(Integer.toString(1 + targets.size())).b().tx("Destination Concept Details");
if (comment) {
tr.td().b().tx("Comment");
}
tr = tbl.tr();
if (sources.get("code").size() == 1) {
String url = sources.get("code").iterator().next();
renderCSDetailsLink(tr, url, true);
} else
tr.td().b().tx("Code");
for (String s : sources.keySet()) {
if (!s.equals("code")) {
if (sources.get(s).size() == 1) {
String url = sources.get(s).iterator().next();
renderCSDetailsLink(tr, url, false);
} else
tr.td().b().addText(getDescForConcept(s));
}
}
if (hasRelationships) {
tr.td();
}
if (targets.get("code").size() == 1) {
String url = targets.get("code").iterator().next();
renderCSDetailsLink(tr, url, true);
} else
tr.td().b().tx("Code");
for (String s : targets.keySet()) {
if (!s.equals("code")) {
if (targets.get(s).size() == 1) {
String url = targets.get(s).iterator().next();
renderCSDetailsLink(tr, url, false);
} else
tr.td().b().addText(getDescForConcept(s));
}
}
if (comment)
tr.td();
for (int si = 0; si < grp.getElement().size(); si++) {
SourceElementComponent ccl = grp.getElement().get(si);
boolean slast = si == grp.getElement().size() - 1;
boolean first = true;
if (false) {
tr = tbl.tr();
td = tr.td().style("border-right-width: 0px");
if (!first)
td.style("border-top-style: none");
else
td.style("border-bottom-style: none");
if (sources.get("code").size() == 1)
td.addText(ccl.getCode());
else
td.addText(grp.getSource() + " / " + ccl.getCode());
display = getDisplayForConcept(systemFromCanonical(grp.getSource()), versionFromCanonical(grp.getSource()), ccl.getCode());
tr.td().style("border-left-width: 0px").tx(display == null ? "" : display);
tr.td().colspan("4").style("background-color: #efefef").tx("(not mapped)");
} else {
for (int ti = 0; ti < ccl.getTarget().size(); ti++) {
TargetElementComponent ccm = ccl.getTarget().get(ti);
boolean last = ti == ccl.getTarget().size() - 1;
tr = tbl.tr();
td = tr.td().style("border-right-width: 0px");
if (!first && !last)
td.style("border-top-style: none; border-bottom-style: none");
else if (!first)
td.style("border-top-style: none");
else if (!last)
td.style("border-bottom-style: none");
if (first) {
if (sources.get("code").size() == 1)
td.addText(ccl.getCode());
else
td.addText(grp.getSource() + " / " + ccl.getCode());
display = ccl.hasDisplay() ? ccl.getDisplay() : getDisplayForConcept(systemFromCanonical(grp.getSource()), versionFromCanonical(grp.getSource()), ccl.getCode());
td = tr.td();
if (!last)
td.style("border-left-width: 0px; border-bottom-style: none");
else
td.style("border-left-width: 0px");
td.tx(display == null ? "" : display);
} else {
// for display
td = tr.td();
if (!last)
td.style("border-left-width: 0px; border-top-style: none; border-bottom-style: none");
else
td.style("border-top-style: none; border-left-width: 0px");
}
for (String s : sources.keySet()) {
if (!s.equals("code")) {
td = tr.td();
if (first) {
td.addText(getValue(ccm.getDependsOn(), s, sources.get(s).size() != 1));
display = getDisplay(ccm.getDependsOn(), s);
if (display != null)
td.tx(" (" + display + ")");
}
}
}
first = false;
if (hasRelationships) {
if (!ccm.hasEquivalence())
tr.td();
else {
String code = ccm.getEquivalenceElement().toString();
tr.td().ah(eqpath + "#" + code).tx(presentEquivalenceCode(code));
}
}
td = tr.td().style("border-right-width: 0px");
if (targets.get("code").size() == 1)
td.addText(ccm.getCode());
else
td.addText(grp.getTarget() + " / " + ccm.getCode());
display = ccm.hasDisplay() ? ccm.getDisplay() : getDisplayForConcept(systemFromCanonical(grp.getTarget()), versionFromCanonical(grp.getTarget()), ccm.getCode());
tr.td().style("border-left-width: 0px").tx(display == null ? "" : display);
for (String s : targets.keySet()) {
if (!s.equals("code")) {
td = tr.td();
td.addText(getValue(ccm.getProduct(), s, targets.get(s).size() != 1));
display = getDisplay(ccm.getProduct(), s);
if (display != null)
td.tx(" (" + display + ")");
}
}
if (comment)
tr.td().addText(ccm.getComment());
}
}
addUnmapped(tbl, grp);
}
}
}
return true;
}
use of org.hl7.fhir.r5.model.ConceptMap.SourceElementComponent in project org.hl7.fhir.core by hapifhir.
the class ConceptMapRenderer method render.
public boolean render(XhtmlNode x, ConceptMap cm) throws FHIRFormatError, DefinitionException, IOException {
x.h2().addText(cm.getName() + " (" + cm.getUrl() + ")");
XhtmlNode p = x.para();
p.tx("Mapping from ");
if (cm.hasSource())
AddVsRef(cm.getSource().primitiveValue(), p);
else
p.tx("(not specified)");
p.tx(" to ");
if (cm.hasTarget())
AddVsRef(cm.getTarget().primitiveValue(), p);
else
p.tx("(not specified)");
p = x.para();
if (cm.getExperimental())
p.addText(Utilities.capitalize(cm.getStatus().toString()) + " (not intended for production usage). ");
else
p.addText(Utilities.capitalize(cm.getStatus().toString()) + ". ");
p.tx("Published on " + (cm.hasDate() ? display(cm.getDateElement()) : "?ngen-10?") + " by " + cm.getPublisher());
if (!cm.getContact().isEmpty()) {
p.tx(" (");
boolean firsti = true;
for (ContactDetail ci : cm.getContact()) {
if (firsti)
firsti = false;
else
p.tx(", ");
if (ci.hasName())
p.addText(ci.getName() + ": ");
boolean first = true;
for (ContactPoint c : ci.getTelecom()) {
if (first)
first = false;
else
p.tx(", ");
addTelecom(p, c);
}
}
p.tx(")");
}
p.tx(". ");
p.addText(cm.getCopyright());
if (!Utilities.noString(cm.getDescription()))
addMarkdown(x, cm.getDescription());
x.br();
CodeSystem cs = getContext().getWorker().fetchCodeSystem("http://hl7.org/fhir/concept-map-relationship");
if (cs == null)
cs = getContext().getWorker().fetchCodeSystem("http://hl7.org/fhir/concept-map-equivalence");
String eqpath = cs == null ? null : cs.getUserString("path");
for (ConceptMapGroupComponent grp : cm.getGroup()) {
String src = grp.getSource();
boolean comment = false;
boolean ok = true;
Map<String, HashSet<String>> sources = new HashMap<String, HashSet<String>>();
Map<String, HashSet<String>> targets = new HashMap<String, HashSet<String>>();
sources.put("code", new HashSet<String>());
targets.put("code", new HashSet<String>());
SourceElementComponent cc = grp.getElement().get(0);
String dst = grp.getTarget();
sources.get("code").add(grp.getSource());
targets.get("code").add(grp.getTarget());
for (SourceElementComponent ccl : grp.getElement()) {
ok = ok && ccl.getTarget().size() == 1 && ccl.getTarget().get(0).getDependsOn().isEmpty() && ccl.getTarget().get(0).getProduct().isEmpty();
for (TargetElementComponent ccm : ccl.getTarget()) {
comment = comment || !Utilities.noString(ccm.getComment());
for (OtherElementComponent d : ccm.getDependsOn()) {
if (!sources.containsKey(d.getProperty()))
sources.put(d.getProperty(), new HashSet<String>());
sources.get(d.getProperty()).add(d.getSystem());
}
for (OtherElementComponent d : ccm.getProduct()) {
if (!targets.containsKey(d.getProperty()))
targets.put(d.getProperty(), new HashSet<String>());
targets.get(d.getProperty()).add(d.getSystem());
}
}
}
String display;
if (ok) {
// simple
XhtmlNode tbl = x.table("grid");
XhtmlNode tr = tbl.tr();
tr.td().b().tx("Source Code");
tr.td().b().tx("Relationship");
tr.td().b().tx("Destination Code");
if (comment)
tr.td().b().tx("Comment");
tr = tbl.tr();
XhtmlNode td = tr.td().colspan(comment ? "4" : "3");
td.tx("Mapping from ");
if (grp.hasSource()) {
renderCanonical(cm, td, grp.getSource());
} else {
td.code("unspecified code system");
}
td.tx(" to ");
if (grp.hasTarget()) {
renderCanonical(cm, td, grp.getTarget());
} else {
td.code("unspecified code system");
}
for (SourceElementComponent ccl : grp.getElement()) {
tr = tbl.tr();
td = tr.td();
td.addText(ccl.getCode());
display = ccl.hasDisplay() ? ccl.getDisplay() : getDisplayForConcept(systemFromCanonical(grp.getSource()), versionFromCanonical(grp.getSource()), ccl.getCode());
if (display != null && !isSameCodeAndDisplay(ccl.getCode(), display))
td.tx(" (" + display + ")");
TargetElementComponent ccm = ccl.getTarget().get(0);
if (!ccm.hasRelationship())
tr.td().tx(":" + "(" + ConceptMapRelationship.EQUIVALENT.toCode() + ")");
else {
if (ccm.getRelationshipElement().hasExtension(ToolingExtensions.EXT_OLD_CONCEPTMAP_EQUIVALENCE)) {
String code = ToolingExtensions.readStringExtension(ccm.getRelationshipElement(), ToolingExtensions.EXT_OLD_CONCEPTMAP_EQUIVALENCE);
tr.td().ah(eqpath + "#" + code).tx(presentEquivalenceCode(code));
} else {
tr.td().ah(eqpath + "#" + ccm.getRelationship().toCode()).tx(presentRelationshipCode(ccm.getRelationship().toCode()));
}
}
td = tr.td();
td.addText(ccm.getCode());
display = ccm.hasDisplay() ? ccm.getDisplay() : getDisplayForConcept(systemFromCanonical(grp.getTarget()), versionFromCanonical(grp.getTarget()), ccm.getCode());
if (display != null && !isSameCodeAndDisplay(ccm.getCode(), display))
td.tx(" (" + display + ")");
if (comment)
tr.td().addText(ccm.getComment());
addUnmapped(tbl, grp);
}
} else {
boolean hasRelationships = false;
for (int si = 0; si < grp.getElement().size(); si++) {
SourceElementComponent ccl = grp.getElement().get(si);
for (int ti = 0; ti < ccl.getTarget().size(); ti++) {
TargetElementComponent ccm = ccl.getTarget().get(ti);
if (ccm.hasRelationship()) {
hasRelationships = true;
}
}
}
XhtmlNode tbl = x.table("grid");
XhtmlNode tr = tbl.tr();
XhtmlNode td;
tr.td().colspan(Integer.toString(1 + sources.size())).b().tx("Source Concept Details");
if (hasRelationships) {
tr.td().b().tx("Relationship");
}
tr.td().colspan(Integer.toString(1 + targets.size())).b().tx("Destination Concept Details");
if (comment) {
tr.td().b().tx("Comment");
}
tr = tbl.tr();
if (sources.get("code").size() == 1) {
String url = sources.get("code").iterator().next();
renderCSDetailsLink(tr, url, true);
} else
tr.td().b().tx("Code");
for (String s : sources.keySet()) {
if (!s.equals("code")) {
if (sources.get(s).size() == 1) {
String url = sources.get(s).iterator().next();
renderCSDetailsLink(tr, url, false);
} else
tr.td().b().addText(getDescForConcept(s));
}
}
if (hasRelationships) {
tr.td();
}
if (targets.get("code").size() == 1) {
String url = targets.get("code").iterator().next();
renderCSDetailsLink(tr, url, true);
} else
tr.td().b().tx("Code");
for (String s : targets.keySet()) {
if (!s.equals("code")) {
if (targets.get(s).size() == 1) {
String url = targets.get(s).iterator().next();
renderCSDetailsLink(tr, url, false);
} else
tr.td().b().addText(getDescForConcept(s));
}
}
if (comment)
tr.td();
for (int si = 0; si < grp.getElement().size(); si++) {
SourceElementComponent ccl = grp.getElement().get(si);
boolean slast = si == grp.getElement().size() - 1;
boolean first = true;
if (ccl.hasNoMap() && ccl.getNoMap()) {
tr = tbl.tr();
td = tr.td().style("border-right-width: 0px");
if (!first)
td.style("border-top-style: none");
else
td.style("border-bottom-style: none");
if (sources.get("code").size() == 1)
td.addText(ccl.getCode());
else
td.addText(grp.getSource() + " / " + ccl.getCode());
display = getDisplayForConcept(systemFromCanonical(grp.getSource()), versionFromCanonical(grp.getSource()), ccl.getCode());
tr.td().style("border-left-width: 0px").tx(display == null ? "" : display);
tr.td().colspan("4").style("background-color: #efefef").tx("(not mapped)");
} else {
for (int ti = 0; ti < ccl.getTarget().size(); ti++) {
TargetElementComponent ccm = ccl.getTarget().get(ti);
boolean last = ti == ccl.getTarget().size() - 1;
tr = tbl.tr();
td = tr.td().style("border-right-width: 0px");
if (!first && !last)
td.style("border-top-style: none; border-bottom-style: none");
else if (!first)
td.style("border-top-style: none");
else if (!last)
td.style("border-bottom-style: none");
if (first) {
if (sources.get("code").size() == 1)
td.addText(ccl.getCode());
else
td.addText(grp.getSource() + " / " + ccl.getCode());
display = ccl.hasDisplay() ? ccl.getDisplay() : getDisplayForConcept(systemFromCanonical(grp.getSource()), versionFromCanonical(grp.getSource()), ccl.getCode());
td = tr.td();
if (!last)
td.style("border-left-width: 0px; border-bottom-style: none");
else
td.style("border-left-width: 0px");
td.tx(display == null ? "" : display);
} else {
// for display
td = tr.td();
if (!last)
td.style("border-left-width: 0px; border-top-style: none; border-bottom-style: none");
else
td.style("border-top-style: none; border-left-width: 0px");
}
for (String s : sources.keySet()) {
if (!s.equals("code")) {
td = tr.td();
if (first) {
td.addText(getValue(ccm.getDependsOn(), s, sources.get(s).size() != 1));
display = getDisplay(ccm.getDependsOn(), s);
if (display != null)
td.tx(" (" + display + ")");
}
}
}
first = false;
if (hasRelationships) {
if (!ccm.hasRelationship())
tr.td();
else {
if (ccm.getRelationshipElement().hasExtension(ToolingExtensions.EXT_OLD_CONCEPTMAP_EQUIVALENCE)) {
String code = ToolingExtensions.readStringExtension(ccm.getRelationshipElement(), ToolingExtensions.EXT_OLD_CONCEPTMAP_EQUIVALENCE);
tr.td().ah(eqpath + "#" + code).tx(presentEquivalenceCode(code));
} else {
tr.td().ah(eqpath + "#" + ccm.getRelationship().toCode()).tx(presentRelationshipCode(ccm.getRelationship().toCode()));
}
}
}
td = tr.td().style("border-right-width: 0px");
if (targets.get("code").size() == 1)
td.addText(ccm.getCode());
else
td.addText(grp.getTarget() + " / " + ccm.getCode());
display = ccm.hasDisplay() ? ccm.getDisplay() : getDisplayForConcept(systemFromCanonical(grp.getTarget()), versionFromCanonical(grp.getTarget()), ccm.getCode());
tr.td().style("border-left-width: 0px").tx(display == null ? "" : display);
for (String s : targets.keySet()) {
if (!s.equals("code")) {
td = tr.td();
td.addText(getValue(ccm.getProduct(), s, targets.get(s).size() != 1));
display = getDisplay(ccm.getProduct(), s);
if (display != null)
td.tx(" (" + display + ")");
}
}
if (comment)
tr.td().addText(ccm.getComment());
}
}
addUnmapped(tbl, grp);
}
}
}
return true;
}
use of org.hl7.fhir.r5.model.ConceptMap.SourceElementComponent in project org.hl7.fhir.core by hapifhir.
the class StructureMapUtilities method produceConceptMap.
private static void produceConceptMap(StringBuilder b, ConceptMap cm) {
b.append("conceptmap \"");
b.append(cm.getId());
b.append("\" {\r\n");
Map<String, String> prefixesSrc = new HashMap<String, String>();
Map<String, String> prefixesTgt = new HashMap<String, String>();
char prefix = 's';
for (ConceptMapGroupComponent cg : cm.getGroup()) {
if (!prefixesSrc.containsKey(cg.getSource())) {
prefixesSrc.put(cg.getSource(), String.valueOf(prefix));
b.append(" prefix ");
b.append(prefix);
b.append(" = \"");
b.append(cg.getSource());
b.append("\"\r\n");
prefix++;
}
if (!prefixesTgt.containsKey(cg.getTarget())) {
prefixesTgt.put(cg.getTarget(), String.valueOf(prefix));
b.append(" prefix ");
b.append(prefix);
b.append(" = \"");
b.append(cg.getTarget());
b.append("\"\r\n");
prefix++;
}
}
b.append("\r\n");
for (ConceptMapGroupComponent cg : cm.getGroup()) {
if (cg.hasUnmapped()) {
b.append(" unmapped for ");
b.append(prefixesSrc.get(cg.getSource()));
b.append(" = ");
b.append(cg.getUnmapped().getMode().toCode());
b.append("\r\n");
}
}
for (ConceptMapGroupComponent cg : cm.getGroup()) {
for (SourceElementComponent ce : cg.getElement()) {
b.append(" ");
b.append(prefixesSrc.get(cg.getSource()));
b.append(":");
if (Utilities.isToken(ce.getCode())) {
b.append(ce.getCode());
} else {
b.append("\"");
b.append(ce.getCode());
b.append("\"");
}
b.append(" ");
b.append(getChar(ce.getTargetFirstRep().getRelationship()));
b.append(" ");
b.append(prefixesTgt.get(cg.getTarget()));
b.append(":");
if (Utilities.isToken(ce.getTargetFirstRep().getCode())) {
b.append(ce.getTargetFirstRep().getCode());
} else {
b.append("\"");
b.append(ce.getTargetFirstRep().getCode());
b.append("\"");
}
b.append("\r\n");
}
}
b.append("}\r\n\r\n");
}
use of org.hl7.fhir.r5.model.ConceptMap.SourceElementComponent in project org.hl7.fhir.core by hapifhir.
the class NarrativeGenerator method generate.
public boolean generate(ResourceContext rcontext, ConceptMap cm) throws FHIRFormatError, DefinitionException, IOException {
XhtmlNode x = new XhtmlNode(NodeType.Element, "div");
x.h2().addText(cm.getName() + " (" + cm.getUrl() + ")");
XhtmlNode p = x.para();
if (cm.hasSource() || cm.hasTarget())
p.tx("Mapping from ");
if (!cm.hasSource())
p.tx("(unspecified)");
else
AddVsRef(rcontext, cm.getSource() instanceof Reference ? ((Reference) cm.getSource()).getReference() : ((UriType) cm.getSource()).asStringValue(), p);
p.tx(" to ");
if (!cm.hasTarget())
p.tx("(unspecified)");
else
AddVsRef(rcontext, cm.getTarget() instanceof Reference ? ((Reference) cm.getTarget()).getReference() : ((UriType) cm.getTarget()).asStringValue(), p);
p = x.para();
if (cm.getExperimental())
p.addText(Utilities.capitalize(cm.getStatus().toString()) + " (not intended for production usage). ");
else
p.addText(Utilities.capitalize(cm.getStatus().toString()) + ". ");
p.tx("Published on " + (cm.hasDate() ? cm.getDateElement().toHumanDisplay() : "??") + " by " + cm.getPublisher());
if (!cm.getContact().isEmpty()) {
p.tx(" (");
boolean firsti = true;
for (ContactDetail ci : cm.getContact()) {
if (firsti)
firsti = false;
else
p.tx(", ");
if (ci.hasName())
p.addText(ci.getName() + ": ");
boolean first = true;
for (ContactPoint c : ci.getTelecom()) {
if (first)
first = false;
else
p.tx(", ");
addTelecom(p, c);
}
}
p.tx(")");
}
p.tx(". ");
p.addText(cm.getCopyright());
if (!Utilities.noString(cm.getDescription()))
addMarkdown(x, cm.getDescription());
x.br();
for (ConceptMapGroupComponent grp : cm.getGroup()) {
String src = grp.getSource();
boolean comment = false;
boolean ok = true;
Map<String, HashSet<String>> sources = new HashMap<String, HashSet<String>>();
Map<String, HashSet<String>> targets = new HashMap<String, HashSet<String>>();
sources.put("code", new HashSet<String>());
targets.put("code", new HashSet<String>());
SourceElementComponent cc = grp.getElement().get(0);
String dst = grp.getTarget();
sources.get("code").add(grp.getSource());
targets.get("code").add(grp.getTarget());
for (SourceElementComponent ccl : grp.getElement()) {
ok = ok && ccl.getTarget().size() == 1 && ccl.getTarget().get(0).getDependsOn().isEmpty() && ccl.getTarget().get(0).getProduct().isEmpty();
for (TargetElementComponent ccm : ccl.getTarget()) {
comment = comment || !Utilities.noString(ccm.getComment());
for (OtherElementComponent d : ccm.getDependsOn()) {
if (!sources.containsKey(d.getProperty()))
sources.put(d.getProperty(), new HashSet<String>());
sources.get(d.getProperty()).add(d.getSystem());
}
for (OtherElementComponent d : ccm.getProduct()) {
if (!targets.containsKey(d.getProperty()))
targets.put(d.getProperty(), new HashSet<String>());
targets.get(d.getProperty()).add(d.getSystem());
}
}
}
String display;
if (ok) {
// simple
XhtmlNode tbl = x.table("grid");
XhtmlNode tr = tbl.tr();
tr.td().b().tx("Source Code");
tr.td().b().tx("Equivalence");
tr.td().b().tx("Destination Code");
if (comment)
tr.td().b().tx("Comment");
for (SourceElementComponent ccl : grp.getElement()) {
tr = tbl.tr();
XhtmlNode td = tr.td();
td.addText(ccl.getCode());
display = getDisplayForConcept(grp.getSource(), ccl.getCode());
if (display != null)
td.tx(" (" + display + ")");
TargetElementComponent ccm = ccl.getTarget().get(0);
tr.td().addText(!ccm.hasEquivalence() ? "" : ccm.getEquivalence().toCode());
td = tr.td();
td.addText(ccm.getCode());
display = getDisplayForConcept(grp.getTarget(), ccm.getCode());
if (display != null)
td.tx(" (" + display + ")");
if (comment)
tr.td().addText(ccm.getComment());
}
} else {
XhtmlNode tbl = x.table("grid");
XhtmlNode tr = tbl.tr();
XhtmlNode td;
tr.td().colspan(Integer.toString(sources.size())).b().tx("Source Concept");
tr.td().b().tx("Equivalence");
tr.td().colspan(Integer.toString(targets.size())).b().tx("Destination Concept");
if (comment)
tr.td().b().tx("Comment");
tr = tbl.tr();
if (sources.get("code").size() == 1)
tr.td().b().tx("Code " + sources.get("code").toString() + "");
else
tr.td().b().tx("Code");
for (String s : sources.keySet()) {
if (!s.equals("code")) {
if (sources.get(s).size() == 1)
tr.td().b().addText(getDescForConcept(s) + " " + sources.get(s).toString());
else
tr.td().b().addText(getDescForConcept(s));
}
}
tr.td();
if (targets.get("code").size() == 1)
tr.td().b().tx("Code " + targets.get("code").toString());
else
tr.td().b().tx("Code");
for (String s : targets.keySet()) {
if (!s.equals("code")) {
if (targets.get(s).size() == 1)
tr.td().b().addText(getDescForConcept(s) + " " + targets.get(s).toString() + "");
else
tr.td().b().addText(getDescForConcept(s));
}
}
if (comment)
tr.td();
for (SourceElementComponent ccl : grp.getElement()) {
tr = tbl.tr();
td = tr.td();
if (sources.get("code").size() == 1)
td.addText(ccl.getCode());
else
td.addText(grp.getSource() + " / " + ccl.getCode());
display = getDisplayForConcept(grp.getSource(), ccl.getCode());
if (display != null)
td.tx(" (" + display + ")");
TargetElementComponent ccm = ccl.getTarget().get(0);
for (String s : sources.keySet()) {
if (!s.equals("code")) {
td = tr.td();
td.addText(getCode(ccm.getDependsOn(), s, sources.get(s).size() != 1));
display = getDisplay(ccm.getDependsOn(), s);
if (display != null)
td.tx(" (" + display + ")");
}
}
if (!ccm.hasEquivalence())
tr.td().tx(":" + "(" + ConceptMapEquivalence.EQUIVALENT.toCode() + ")");
else
tr.td().tx(":" + ccm.getEquivalence().toCode());
td = tr.td();
if (targets.get("code").size() == 1)
td.addText(ccm.getCode());
else
td.addText(grp.getTarget() + " / " + ccm.getCode());
display = getDisplayForConcept(grp.getTarget(), ccm.getCode());
if (display != null)
td.tx(" (" + display + ")");
for (String s : targets.keySet()) {
if (!s.equals("code")) {
td = tr.td();
td.addText(getCode(ccm.getProduct(), s, targets.get(s).size() != 1));
display = getDisplay(ccm.getProduct(), s);
if (display != null)
td.tx(" (" + display + ")");
}
}
if (comment)
tr.td().addText(ccm.getComment());
}
}
}
inject(cm, x, NarrativeStatus.GENERATED);
return true;
}
use of org.hl7.fhir.r5.model.ConceptMap.SourceElementComponent in project org.hl7.fhir.core by hapifhir.
the class StructureMapUtilities method translate.
public Base translate(TransformContext context, StructureMap map, Base source, String conceptMapUrl, String fieldToReturn) throws FHIRException {
Coding src = new Coding();
if (source.isPrimitive()) {
src.setCode(source.primitiveValue());
} else if ("Coding".equals(source.fhirType())) {
Base[] b = source.getProperty("system".hashCode(), "system", true);
if (b.length == 1)
src.setSystem(b[0].primitiveValue());
b = source.getProperty("code".hashCode(), "code", true);
if (b.length == 1)
src.setCode(b[0].primitiveValue());
} else if ("CE".equals(source.fhirType())) {
Base[] b = source.getProperty("codeSystem".hashCode(), "codeSystem", true);
if (b.length == 1)
src.setSystem(b[0].primitiveValue());
b = source.getProperty("code".hashCode(), "code", true);
if (b.length == 1)
src.setCode(b[0].primitiveValue());
} else
throw new FHIRException("Unable to translate source " + source.fhirType());
String su = conceptMapUrl;
if (conceptMapUrl.equals("http://hl7.org/fhir/ConceptMap/special-oid2uri")) {
String uri = worker.oid2Uri(src.getCode());
if (uri == null)
uri = "urn:oid:" + src.getCode();
if ("uri".equals(fieldToReturn))
return new UriType(uri);
else
throw new FHIRException("Error in return code");
} else {
ConceptMap cmap = null;
if (conceptMapUrl.startsWith("#")) {
for (Resource r : map.getContained()) {
if (r instanceof ConceptMap && ((ConceptMap) r).getId().equals(conceptMapUrl.substring(1))) {
cmap = (ConceptMap) r;
su = map.getUrl() + "#" + conceptMapUrl;
}
}
if (cmap == null)
throw new FHIRException("Unable to translate - cannot find map " + conceptMapUrl);
} else {
if (conceptMapUrl.contains("#")) {
String[] p = conceptMapUrl.split("\\#");
StructureMap mapU = worker.fetchResource(StructureMap.class, p[0]);
for (Resource r : mapU.getContained()) {
if (r instanceof ConceptMap && ((ConceptMap) r).getId().equals(p[1])) {
cmap = (ConceptMap) r;
su = conceptMapUrl;
}
}
}
if (cmap == null)
cmap = worker.fetchResource(ConceptMap.class, conceptMapUrl);
}
Coding outcome = null;
boolean done = false;
String message = null;
if (cmap == null) {
if (services == null)
message = "No map found for " + conceptMapUrl;
else {
outcome = services.translate(context.appInfo, src, conceptMapUrl);
done = true;
}
} else {
List<SourceElementComponentWrapper> list = new ArrayList<SourceElementComponentWrapper>();
for (ConceptMapGroupComponent g : cmap.getGroup()) {
for (SourceElementComponent e : g.getElement()) {
if (!src.hasSystem() && src.getCode().equals(e.getCode()))
list.add(new SourceElementComponentWrapper(g, e));
else if (src.hasSystem() && src.getSystem().equals(g.getSource()) && src.getCode().equals(e.getCode()))
list.add(new SourceElementComponentWrapper(g, e));
}
}
if (list.size() == 0)
done = true;
else if (list.get(0).comp.getTarget().size() == 0)
message = "Concept map " + su + " found no translation for " + src.getCode();
else {
for (TargetElementComponent tgt : list.get(0).comp.getTarget()) {
if (tgt.getEquivalence() == null || EnumSet.of(ConceptMapEquivalence.EQUAL, ConceptMapEquivalence.RELATEDTO, ConceptMapEquivalence.EQUIVALENT, ConceptMapEquivalence.WIDER).contains(tgt.getEquivalence())) {
if (done) {
message = "Concept map " + su + " found multiple matches for " + src.getCode();
done = false;
} else {
done = true;
outcome = new Coding().setCode(tgt.getCode()).setSystem(list.get(0).group.getTarget());
}
} else if (tgt.getEquivalence() == ConceptMapEquivalence.UNMATCHED) {
done = true;
}
}
if (!done)
message = "Concept map " + su + " found no usable translation for " + src.getCode();
}
}
if (!done)
throw new FHIRException(message);
if (outcome == null)
return null;
if ("code".equals(fieldToReturn))
return new CodeType(outcome.getCode());
else
return outcome;
}
}
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