Examples with FHIRVersion org.hl7.fhir.r5.model.Enumerations.FHIRVersion used on opensource projects

Example 11 with FHIRVersion

use of org.hl7.fhir.r5.model.Enumerations.FHIRVersion in project org.hl7.fhir.core by hapifhir.

the class Conformance method copy.

public Conformance copy() {
    Conformance dst = new Conformance();
    copyValues(dst);
    dst.url = url == null ? null : url.copy();
    dst.version = version == null ? null : version.copy();
    dst.name = name == null ? null : name.copy();
    dst.status = status == null ? null : status.copy();
    dst.experimental = experimental == null ? null : experimental.copy();
    dst.publisher = publisher == null ? null : publisher.copy();
    if (contact != null) {
        dst.contact = new ArrayList<ConformanceContactComponent>();
        for (ConformanceContactComponent i : contact) dst.contact.add(i.copy());
    }
    ;
    dst.date = date == null ? null : date.copy();
    dst.description = description == null ? null : description.copy();
    dst.requirements = requirements == null ? null : requirements.copy();
    dst.copyright = copyright == null ? null : copyright.copy();
    dst.kind = kind == null ? null : kind.copy();
    dst.software = software == null ? null : software.copy();
    dst.implementation = implementation == null ? null : implementation.copy();
    dst.fhirVersion = fhirVersion == null ? null : fhirVersion.copy();
    dst.acceptUnknown = acceptUnknown == null ? null : acceptUnknown.copy();
    if (format != null) {
        dst.format = new ArrayList<CodeType>();
        for (CodeType i : format) dst.format.add(i.copy());
    }
    ;
    if (profile != null) {
        dst.profile = new ArrayList<Reference>();
        for (Reference i : profile) dst.profile.add(i.copy());
    }
    ;
    if (rest != null) {
        dst.rest = new ArrayList<ConformanceRestComponent>();
        for (ConformanceRestComponent i : rest) dst.rest.add(i.copy());
    }
    ;
    if (messaging != null) {
        dst.messaging = new ArrayList<ConformanceMessagingComponent>();
        for (ConformanceMessagingComponent i : messaging) dst.messaging.add(i.copy());
    }
    ;
    if (document != null) {
        dst.document = new ArrayList<ConformanceDocumentComponent>();
        for (ConformanceDocumentComponent i : document) dst.document.add(i.copy());
    }
    ;
    return dst;
}

Example 12 with FHIRVersion

use of org.hl7.fhir.r5.model.Enumerations.FHIRVersion in project org.hl7.fhir.core by hapifhir.

the class NPMPackageGenerator method buildPackageJson.

private void buildPackageJson(String canonical, PackageType kind, String web, String genDate, ImplementationGuide ig, List<String> fhirVersion) throws FHIRException, IOException {
    CommaSeparatedStringBuilder b = new CommaSeparatedStringBuilder();
    if (!ig.hasPackageId())
        b.append("packageId");
    if (!ig.hasVersion())
        b.append("version");
    if (!ig.hasFhirVersion())
        b.append("fhirVersion");
    if (!ig.hasLicense())
        b.append("license");
    for (ImplementationGuideDependsOnComponent d : ig.getDependsOn()) {
        if (!d.hasVersion()) {
            b.append("dependsOn.version(" + d.getUri() + ")");
        }
    }
    JsonObject npm = new JsonObject();
    npm.addProperty("name", ig.getPackageId());
    npm.addProperty("version", ig.getVersion());
    npm.addProperty("tools-version", ToolsVersion.TOOLS_VERSION);
    npm.addProperty("type", kind.getCode());
    if (ig.hasLicense())
        npm.addProperty("license", ig.getLicense().toCode());
    npm.addProperty("canonical", canonical);
    npm.addProperty("url", web);
    if (ig.hasTitle())
        npm.addProperty("title", ig.getTitle());
    if (ig.hasDescription())
        npm.addProperty("description", ig.getDescription() + " (built " + genDate + timezone() + ")");
    if (kind != PackageType.CORE) {
        JsonObject dep = new JsonObject();
        npm.add("dependencies", dep);
        for (String v : fhirVersion) {
            // TODO: fix for multiple versions
            dep.addProperty("hl7.fhir.core", v);
        }
        for (ImplementationGuideDependsOnComponent d : ig.getDependsOn()) {
            dep.addProperty(d.getPackageId(), d.getVersion());
        }
    }
    if (ig.hasPublisher())
        npm.addProperty("author", ig.getPublisher());
    JsonArray m = new JsonArray();
    for (ContactDetail t : ig.getContact()) {
        String email = email(t.getTelecom());
        String url = url(t.getTelecom());
        if (t.hasName() & (email != null || url != null)) {
            JsonObject md = new JsonObject();
            m.add(md);
            md.addProperty("name", t.getName());
            if (email != null)
                md.addProperty("email", email);
            if (url != null)
                md.addProperty("url", url);
        }
    }
    if (m.size() > 0)
        npm.add("maintainers", m);
    if (ig.getManifest().hasRendering())
        npm.addProperty("homepage", ig.getManifest().getRendering());
    JsonObject dir = new JsonObject();
    npm.add("directories", dir);
    dir.addProperty("lib", "package");
    dir.addProperty("example", "example");
    Gson gson = new GsonBuilder().setPrettyPrinting().create();
    String json = gson.toJson(npm);
    try {
        addFile(Category.RESOURCE, "package.json", json.getBytes("UTF-8"));
    } catch (UnsupportedEncodingException e) {
    }
    packageJ = npm;
}

Example 13 with FHIRVersion

use of org.hl7.fhir.r5.model.Enumerations.FHIRVersion in project org.hl7.fhir.core by hapifhir.

the class ProfileComparer method compare.

public ProfileComparison compare(StructureDefinition left, StructureDefinition right) throws DefinitionException, FHIRFormatError, IOException {
    check(left, "left");
    check(right, "right");
    ProfileComparison res = new ProfileComparison(left, right);
    session.identify(res);
    StructureDefinition sd = new StructureDefinition();
    res.setUnion(sd);
    session.identify(sd);
    sd.setName("Union" + left.getName() + "And" + right.getName());
    sd.setTitle("Union of " + left.getTitle() + " And " + right.getTitle());
    sd.setStatus(left.getStatus());
    sd.setDate(new Date());
    StructureDefinition sd1 = new StructureDefinition();
    res.setIntersection(sd1);
    session.identify(sd1);
    sd1.setName("Intersection" + left.getName() + "And" + right.getName());
    sd1.setTitle("Intersection of " + left.getTitle() + " And " + right.getTitle());
    sd1.setStatus(left.getStatus());
    sd1.setDate(new Date());
    compareMetadata(left, right, res.getMetadata(), res);
    comparePrimitives("fhirVersion", left.getFhirVersionElement(), right.getFhirVersionElement(), res.getMetadata(), IssueSeverity.WARNING, res);
    comparePrimitives("kind", left.getKindElement(), right.getKindElement(), res.getMetadata(), IssueSeverity.WARNING, res);
    comparePrimitives("abstract", left.getAbstractElement(), right.getAbstractElement(), res.getMetadata(), IssueSeverity.WARNING, res);
    comparePrimitives("type", left.getTypeElement(), right.getTypeElement(), res.getMetadata(), IssueSeverity.ERROR, res);
    comparePrimitives("baseDefinition", left.getBaseDefinitionElement(), right.getBaseDefinitionElement(), res.getMetadata(), IssueSeverity.ERROR, res);
    if (left.getType().equals(right.getType())) {
        DefinitionNavigator ln = new DefinitionNavigator(session.getContextLeft(), left);
        DefinitionNavigator rn = new DefinitionNavigator(session.getContextRight(), right);
        StructuralMatch<ElementDefinitionNode> sm = new StructuralMatch<ElementDefinitionNode>(new ElementDefinitionNode(left, ln.current()), new ElementDefinitionNode(right, rn.current()));
        compareElements(res, sm, ln.path(), null, ln, rn);
        res.combined = sm;
    }
    return res;
}

Example 14 with FHIRVersion

use of org.hl7.fhir.r5.model.Enumerations.FHIRVersion in project org.hl7.fhir.core by hapifhir.

the class ProfileUtilities method makeBaseDefinition.

public static StructureDefinition makeBaseDefinition(FHIRVersion fhirVersion) {
    StructureDefinition base = new StructureDefinition();
    base.setId("Base");
    base.setUrl("http://hl7.org/fhir/StructureDefinition/Base");
    base.setVersion(fhirVersion.toCode());
    base.setName("Base");
    base.setStatus(PublicationStatus.ACTIVE);
    base.setDate(new Date());
    base.setFhirVersion(fhirVersion);
    base.setKind(StructureDefinitionKind.COMPLEXTYPE);
    base.setAbstract(true);
    base.setType("Base");
    ElementDefinition e = base.getSnapshot().getElementFirstRep();
    e.setId("Base");
    e.setPath("Base");
    e.setMin(0);
    e.setMax("*");
    e.getBase().setPath("Base");
    e.getBase().setMin(0);
    e.getBase().setMax("*");
    e.setIsModifier(false);
    e = base.getDifferential().getElementFirstRep();
    e.setId("Base");
    e.setPath("Base");
    e.setMin(0);
    e.setMax("*");
    return base;
}

Example 15 with FHIRVersion

use of org.hl7.fhir.r5.model.Enumerations.FHIRVersion in project org.hl7.fhir.core by hapifhir.

the class SHCParser method parse.

public List<NamedElement> parse(InputStream stream) throws IOException, FHIRFormatError, DefinitionException, FHIRException {
    List<NamedElement> res = new ArrayList<>();
    String src = TextFile.streamToString(stream).trim();
    List<String> list = new ArrayList<>();
    String pfx = null;
    if (src.startsWith("{")) {
        JsonObject json = JsonTrackingParser.parseJson(src);
        if (checkProperty(json, "$", "verifiableCredential", true, "Array")) {
            pfx = "verifiableCredential";
            JsonArray arr = json.getAsJsonArray("verifiableCredential");
            int i = 0;
            for (JsonElement e : arr) {
                if (!(e instanceof JsonPrimitive)) {
                    logError(line(e), col(e), "$.verifiableCredential[" + i + "]", IssueType.STRUCTURE, "Wrong Property verifiableCredential in JSON Payload. Expected : String but found " + JSONUtil.type(e), IssueSeverity.ERROR);
                } else {
                    list.add(e.getAsString());
                }
                i++;
            }
        } else {
            return res;
        }
    } else {
        list.add(src);
    }
    int c = 0;
    for (String ssrc : list) {
        String prefix = pfx == null ? "" : pfx + "[" + Integer.toString(c) + "].";
        c++;
        JWT jwt = null;
        try {
            jwt = decodeJWT(ssrc);
        } catch (Exception e) {
            logError(1, 1, prefix + "JWT", IssueType.INVALID, "Unable to decode JWT token", IssueSeverity.ERROR);
            return res;
        }
        map = jwt.map;
        checkNamedProperties(jwt.getPayload(), prefix + "payload", "iss", "nbf", "vc");
        checkProperty(jwt.getPayload(), prefix + "payload", "iss", true, "String");
        logError(1, 1, prefix + "JWT", IssueType.INFORMATIONAL, "The FHIR Validator does not check the JWT signature " + "(see https://demo-portals.smarthealth.cards/VerifierPortal.html or https://github.com/smart-on-fhir/health-cards-dev-tools) (Issuer = '" + jwt.getPayload().get("iss").getAsString() + "')", IssueSeverity.INFORMATION);
        checkProperty(jwt.getPayload(), prefix + "payload", "nbf", true, "Number");
        JsonObject vc = jwt.getPayload().getAsJsonObject("vc");
        if (vc == null) {
            logError(1, 1, "JWT", IssueType.STRUCTURE, "Unable to find property 'vc' in the payload", IssueSeverity.ERROR);
            return res;
        }
        String path = prefix + "payload.vc";
        checkNamedProperties(vc, path, "type", "credentialSubject");
        if (!checkProperty(vc, path, "type", true, "Array")) {
            return res;
        }
        JsonArray type = vc.getAsJsonArray("type");
        int i = 0;
        for (JsonElement e : type) {
            if (!(e instanceof JsonPrimitive)) {
                logError(line(e), col(e), path + ".type[" + i + "]", IssueType.STRUCTURE, "Wrong Property Type in JSON Payload. Expected : String but found " + JSONUtil.type(e), IssueSeverity.ERROR);
            } else {
                types.add(e.getAsString());
            }
            i++;
        }
        if (!types.contains("https://smarthealth.cards#health-card")) {
            logError(line(vc), col(vc), path, IssueType.STRUCTURE, "Card does not claim to be of type https://smarthealth.cards#health-card, cannot validate", IssueSeverity.ERROR);
            return res;
        }
        if (!checkProperty(vc, path, "credentialSubject", true, "Object")) {
            return res;
        }
        JsonObject cs = vc.getAsJsonObject("credentialSubject");
        path = path + ".credentialSubject";
        if (!checkProperty(cs, path, "fhirVersion", true, "String")) {
            return res;
        }
        JsonElement fv = cs.get("fhirVersion");
        if (!VersionUtilities.versionsCompatible(context.getVersion(), fv.getAsString())) {
            logError(line(fv), col(fv), path + ".fhirVersion", IssueType.STRUCTURE, "Card claims to be of version " + fv.getAsString() + ", cannot be validated against version " + context.getVersion(), IssueSeverity.ERROR);
            return res;
        }
        if (!checkProperty(cs, path, "fhirBundle", true, "Object")) {
            return res;
        }
        // ok. all checks passed, we can now validate the bundle
        Element e = jsonParser.parse(cs.getAsJsonObject("fhirBundle"), map);
        if (e != null) {
            res.add(new NamedElement(path, e));
        }
    }
    return res;
}