Examples with FHIRVersion org.hl7.fhir.r5.model.Enumerations.FHIRVersion used on opensource projects

Example 36 with FHIRVersion

use of org.hl7.fhir.r5.model.Enumerations.FHIRVersion in project ab2d by CMSgov.

the class PatientClaimsProcessorImpl method writeOutData.

String writeOutData(PatientClaimsRequest request, FhirVersion fhirVersion, ProgressTrackerUpdate update) throws IOException {
    File file = null;
    String anyErrors = null;
    try (ClaimsStream stream = new ClaimsStream(request.getJob(), request.getEfsMount(), DATA, searchConfig.getStreamingDir(), searchConfig.getFinishedDir(), searchConfig.getBufferSize())) {
        file = stream.getFile();
        logManager.log(new FileEvent(request.getOrganization(), request.getJob(), stream.getFile(), FileEvent.FileStatus.OPEN));
        for (CoverageSummary patient : request.getCoverageSummary()) {
            List<IBaseResource> eobs = getEobBundleResources(request, patient);
            anyErrors = writeOutResource(fhirVersion, update, eobs, stream);
            update.incPatientProcessCount();
        }
    } finally {
        logManager.log(new FileEvent(request.getOrganization(), request.getJob(), file, FileEvent.FileStatus.CLOSE));
    }
    return anyErrors;
}

Example 37 with FHIRVersion

use of org.hl7.fhir.r5.model.Enumerations.FHIRVersion in project camel-spring-boot-examples by apache.

the class MyCamelRouter method configure.

@Override
public void configure() throws Exception {
    from("file:{{input}}").routeId("fhir-example").onException(ProtocolException.class).handled(true).log(LoggingLevel.ERROR, "Error connecting to FHIR server with URL:{{serverUrl}}, please check the application.properties file ${exception.message}").end().onException(HL7Exception.class).handled(true).log(LoggingLevel.ERROR, "Error unmarshalling ${file:name} ${exception.message}").end().log("Converting ${file:name}").unmarshal().hl7().process(exchange -> {
        ORU_R01 msg = exchange.getIn().getBody(ORU_R01.class);
        final PID pid = msg.getPATIENT_RESULT().getPATIENT().getPID();
        String surname = pid.getPatientName()[0].getFamilyName().getFn1_Surname().getValue();
        String name = pid.getPatientName()[0].getGivenName().getValue();
        String patientId = msg.getPATIENT_RESULT().getPATIENT().getPID().getPatientID().getCx1_ID().getValue();
        Patient patient = new Patient();
        patient.addName().addGiven(name);
        patient.getNameFirstRep().setFamily(surname);
        patient.setId(patientId);
        exchange.getIn().setBody(patient);
    }).marshal().fhirJson("{{fhirVersion}}").convertBodyTo(String.class).log("Inserting Patient: ${body}").to("fhir://create/resource?inBody=resourceAsString&serverUrl={{serverUrl}}&fhirVersion={{fhirVersion}}").log("Patient created successfully: ${body}");
}

Example 38 with FHIRVersion

use of org.hl7.fhir.r5.model.Enumerations.FHIRVersion in project kindling by HL7.

the class SpecNPMPackageGenerator method generate.

// 
// public static void main(String[] args) throws Exception {
// //    generateForVersion("F:\\fhir\\web\\DSTU2", "http://hl7.org/fhir/DSTU2");
// generateForVersion("E:\\fhir\\web\\2016May", "http://hl7.org/fhir/2016May", new Date());
// //    generateForVersion("F:\\fhir\\web\\STU3", "http://hl7.org/fhir/2016STU3");
// System.out.println("Done");
// }
// private static void generateForVersion(String folder, String url, Date genDate) throws Exception {
// SpecNPMPackageGenerator self = new SpecNPMPackageGenerator();
// self.generate(folder, url, false, genDate);
// }
// 
public void generate(String folder, String url, boolean forWeb, Date genDate, String pidRoot) throws Exception {
    System.out.println("Generate Package for " + folder);
    Map<String, byte[]> files = loadZip(new FileInputStream(Utilities.path(folder, "igpack.zip")));
    FHIRVersion version = determineVersion(files);
    System.out.println(" .. Loading v" + version);
    SpecMapManager spm = new SpecMapManager(files.get("spec.internals"), version.toCode());
    System.out.println(" .. Conformance Resources");
    List<ResourceEntry> reslist = makeResourceList(files, version.toCode());
    System.out.println(" .. Other Resources");
    addToResList(folder, reslist, version.toCode());
    System.out.println(" .. building IG");
    ImplementationGuide ig = new ImplementationGuide();
    ig.setId("fhir");
    ig.setUrl("http://hl7.org/fhir/ImplementationGuide/fhir");
    ig.setVersion(version.toCode());
    ig.addFhirVersion(version);
    ig.setLicense(SPDXLicense.CC01_0);
    ig.setTitle("FHIR Core package");
    ig.setDescription("FHIR Core package - the NPM package that contains all the definitions for the base FHIR specification");
    ig.setPublisher("HL7 Inc");
    ig.getContactFirstRep().getTelecomFirstRep().setSystem(ContactPointSystem.URL).setValue("http://hl7.org/fhir");
    ig.setPackageId(pidRoot + ".core");
    ig.getManifest().setRendering(url);
    for (ResourceEntry e : reslist) {
        ManifestResourceComponent r = ig.getManifest().addResource();
        r.setReference(new Reference(e.type + "/" + e.id));
        if (e.conf)
            r.setExample(new BooleanType(true));
        r.setRelativePath(spm.getPath(e.canonical, null));
    }
    for (String k : files.keySet()) {
        if (k.endsWith(".png") || k.endsWith(".gif"))
            ig.getManifest().addImage(k);
        else if (k.endsWith(".css"))
            ig.getManifest().addOther(k);
    }
    Map<String, ManifestPageComponent> map = new HashMap<String, ManifestPageComponent>();
    for (String k : spm.getPages()) {
        ManifestPageComponent pp = ig.getManifest().addPage();
        pp.setName(k).setTitle(spm.getPage(k));
        map.put(pp.getName(), pp);
    }
    for (String k : spm.getTargets()) {
        String n = null;
        String f = null;
        if (k.contains("#")) {
            n = k.substring(0, k.indexOf("#"));
            f = k.substring(k.indexOf("#") + 1);
        } else
            n = k;
        ManifestPageComponent p = map.get(n);
        if (p == null) {
            p = ig.getManifest().addPage();
            p.setName(n);
            map.put(p.getName(), p);
        }
        if (f != null)
            p.addAnchor(f);
    }
    // ok ig is full loaded...
    System.out.println(" .. Building NPM Package");
    NPMPackageGenerator npm = new NPMPackageGenerator(Utilities.path(folder, pidRoot + ".core.tgz"), "http://hl7.org/fhir", url, PackageType.CORE, ig, genDate, true);
    ByteArrayOutputStream bs = new ByteArrayOutputStream();
    new org.hl7.fhir.r5.formats.JsonParser().setOutputStyle(OutputStyle.NORMAL).compose(bs, ig);
    // npm.addFile(Category.RESOURCE, "ig-r4.json", bs.toByteArray());
    addConvertedIg(npm, ig, version.toCode());
    for (ResourceEntry e : reslist) {
        npm.addFile(Category.RESOURCE, e.type + "-" + e.id + ".json", e.json);
    }
    for (String k : files.keySet()) {
        if (k.endsWith(".png") || k.endsWith(".css") || k.endsWith(".template") || k.endsWith(".zip") || k.endsWith(".gif") || k.equals("spec.internals") || k.equals("mappingSpaces.details"))
            npm.addFile(Category.OTHER, k, files.get(k));
    }
    for (String fn : new File(folder).list()) {
        if (fn.endsWith(".schema.json") || fn.endsWith(".openapi.json")) {
            byte[] b = TextFile.fileToBytes(Utilities.path(folder, fn));
            npm.addFile(Category.OPENAPI, fn, b);
        }
        if (fn.endsWith(".xsd") || fn.endsWith(".sch")) {
            byte[] b = TextFile.fileToBytes(Utilities.path(folder, fn));
            npm.addFile(Category.SCHEMATRON, fn, b);
        }
    }
    npm.finish();
    System.out.println(" .. Built");
    System.out.println(" .. Building NPM Package (xml)");
    ig.setId("fhir-xml");
    ig.setUrl("http://hl7.org/fhir/ImplementationGuide/fhir-xml");
    ig.setTitle("FHIR Core package (XML Conformance files)");
    ig.setDescription("FHIR Core package - the NPM package that contains all the definitions for the base FHIR specification (XML)");
    ig.setPackageId(pidRoot + ".corexml");
    npm = new NPMPackageGenerator(Utilities.path(folder, pidRoot + ".corexml.tgz"), "http://hl7.org/fhir", url, PackageType.CORE, ig, genDate, true);
    bs = new ByteArrayOutputStream();
    new org.hl7.fhir.r5.formats.XmlParser().setOutputStyle(OutputStyle.NORMAL).compose(bs, ig);
    npm.addFile(Category.RESOURCE, "ig-r4.json", bs.toByteArray());
    addConvertedIgX(npm, ig, version.toCode());
    for (ResourceEntry e : reslist) {
        if (e.xml != null)
            npm.addFile(Category.RESOURCE, e.type + "-" + e.id + ".xml", e.xml);
    }
    npm.finish();
    System.out.println(" .. Built");
}

Example 39 with FHIRVersion

use of org.hl7.fhir.r5.model.Enumerations.FHIRVersion in project kindling by HL7.

the class JsonLDGenerator method generate.

public void generate(JsonObject context, ElementDefn root, FHIRVersion version, String genDate) throws Exception {
    enums.clear();
    enumDefs.clear();
    scanTypes(root, root);
    generateType(context, root, root.getName(), root, true, context, new HashSet<String>());
    for (ElementDefn e : types.keySet()) {
        generateType(context, root, types.get(e), e, true, context, new HashSet<String>());
    }
}

Example 40 with FHIRVersion

use of org.hl7.fhir.r5.model.Enumerations.FHIRVersion in project org.hl7.fhir.core by hapifhir.

the class RdfParser method composeConformance.

protected void composeConformance(Complex parent, String parentType, String name, Conformance element, int index) {
    if (element == null)
        return;
    Complex t;
    if (Utilities.noString(parentType))
        t = parent;
    else {
        t = parent.predicate("fhir:" + parentType + '.' + name);
    }
    composeDomainResource(t, "Conformance", name, element, index);
    if (element.hasUrlElement())
        composeUri(t, "Conformance", "url", element.getUrlElement(), -1);
    if (element.hasVersionElement())
        composeString(t, "Conformance", "version", element.getVersionElement(), -1);
    if (element.hasNameElement())
        composeString(t, "Conformance", "name", element.getNameElement(), -1);
    if (element.hasStatusElement())
        composeEnum(t, "Conformance", "status", element.getStatusElement(), -1);
    if (element.hasExperimentalElement())
        composeBoolean(t, "Conformance", "experimental", element.getExperimentalElement(), -1);
    if (element.hasDateElement())
        composeDateTime(t, "Conformance", "date", element.getDateElement(), -1);
    if (element.hasPublisherElement())
        composeString(t, "Conformance", "publisher", element.getPublisherElement(), -1);
    for (int i = 0; i < element.getContact().size(); i++) composeConformanceConformanceContactComponent(t, "Conformance", "contact", element.getContact().get(i), i);
    if (element.hasDescriptionElement())
        composeString(t, "Conformance", "description", element.getDescriptionElement(), -1);
    for (int i = 0; i < element.getUseContext().size(); i++) composeCodeableConcept(t, "Conformance", "useContext", element.getUseContext().get(i), i);
    if (element.hasRequirementsElement())
        composeString(t, "Conformance", "requirements", element.getRequirementsElement(), -1);
    if (element.hasCopyrightElement())
        composeString(t, "Conformance", "copyright", element.getCopyrightElement(), -1);
    if (element.hasKindElement())
        composeEnum(t, "Conformance", "kind", element.getKindElement(), -1);
    if (element.hasSoftware())
        composeConformanceConformanceSoftwareComponent(t, "Conformance", "software", element.getSoftware(), -1);
    if (element.hasImplementation())
        composeConformanceConformanceImplementationComponent(t, "Conformance", "implementation", element.getImplementation(), -1);
    if (element.hasFhirVersionElement())
        composeId(t, "Conformance", "fhirVersion", element.getFhirVersionElement(), -1);
    if (element.hasAcceptUnknownElement())
        composeEnum(t, "Conformance", "acceptUnknown", element.getAcceptUnknownElement(), -1);
    for (int i = 0; i < element.getFormat().size(); i++) composeCode(t, "Conformance", "format", element.getFormat().get(i), i);
    for (int i = 0; i < element.getProfile().size(); i++) composeReference(t, "Conformance", "profile", element.getProfile().get(i), i);
    for (int i = 0; i < element.getRest().size(); i++) composeConformanceConformanceRestComponent(t, "Conformance", "rest", element.getRest().get(i), i);
    for (int i = 0; i < element.getMessaging().size(); i++) composeConformanceConformanceMessagingComponent(t, "Conformance", "messaging", element.getMessaging().get(i), i);
    for (int i = 0; i < element.getDocument().size(); i++) composeConformanceConformanceDocumentComponent(t, "Conformance", "document", element.getDocument().get(i), i);
}