Examples with IdType org.hl7.fhir.r5.model.IdType used on opensource projects

Example 16 with IdType

use of org.hl7.fhir.r5.model.IdType in project cqf-ruler by DBCG.

the class MeasureEvaluateProviderIT method testMeasureEvaluate.

@Test
public void testMeasureEvaluate() throws Exception {
    String bundleAsText = stringFromResource("Exm104FhirR4MeasureBundle.json");
    Bundle bundle = (Bundle) getFhirContext().newJsonParser().parseResource(bundleAsText);
    getClient().transaction().withBundle(bundle).execute();
    Parameters params = new Parameters();
    params.addParameter().setName("periodStart").setValue(new StringType("2019-01-01"));
    params.addParameter().setName("periodEnd").setValue(new StringType("2020-01-01"));
    params.addParameter().setName("reportType").setValue(new StringType("individual"));
    params.addParameter().setName("subject").setValue(new StringType("Patient/numer-EXM104"));
    params.addParameter().setName("lastReceivedOn").setValue(new StringType("2019-12-12"));
    MeasureReport returnMeasureReport = getClient().operation().onInstance(new IdType("Measure", "measure-EXM104-8.2.000")).named("$evaluate-measure").withParameters(params).returnResourceType(MeasureReport.class).execute();
    assertNotNull(returnMeasureReport);
// System.out.println("Resource:"+this.getFhirContext().newJsonParser().setPrettyPrint(true).encodeResourceToString(returnMeasureReport));
}

Example 17 with IdType

use of org.hl7.fhir.r5.model.IdType in project cqf-ruler by DBCG.

the class MeasureEvaluateProviderIT method testMeasureEvaluateWithAdditionalData.

@Test
public void testMeasureEvaluateWithAdditionalData() throws Exception {
    String mainBundleAsText = stringFromResource("Exm104FhirR4MeasurePartBundle.json");
    Bundle bundle = (Bundle) getFhirContext().newJsonParser().parseResource(mainBundleAsText);
    getClient().transaction().withBundle(bundle).execute();
    String additionalBundleAsText = stringFromResource("Exm104FhirR4MeasureAdditionalData.json");
    Bundle additionalData = (Bundle) getFhirContext().newJsonParser().parseResource(additionalBundleAsText);
    Parameters params = new Parameters();
    params.addParameter().setName("periodStart").setValue(new StringType("2019-01-01"));
    params.addParameter().setName("periodEnd").setValue(new StringType("2020-01-01"));
    params.addParameter().setName("reportType").setValue(new StringType("subject"));
    params.addParameter().setName("subject").setValue(new StringType("Patient/numer-EXM104"));
    params.addParameter().setName("lastReceivedOn").setValue(new StringType("2019-12-12"));
    params.addParameter().setName("additionalData").setResource(additionalData);
    MeasureReport returnMeasureReport = getClient().operation().onInstance(new IdType("Measure", "measure-EXM104-8.2.000")).named("$evaluate-measure").withParameters(params).returnResourceType(MeasureReport.class).execute();
    assertNotNull(returnMeasureReport);
}

Example 18 with IdType

use of org.hl7.fhir.r5.model.IdType in project cqf-ruler by DBCG.

the class MeasureEvaluateProvider method evaluateMeasure.

/**
 * Implements the <a href=
 * "https://www.hl7.org/fhir/operation-measure-evaluate-measure.html">$evaluate-measure</a>
 * operation found in the
 * <a href="http://www.hl7.org/fhir/clinicalreasoning-module.html">FHIR Clinical
 * Reasoning Module</a>. This implementation aims to be compatible with the CQF
 * IG.
 *
 * @param requestDetails The details (such as tenant) of this request. Usually
 *                       auto-populated HAPI.
 * @param theId          the Id of the Measure to evaluate
 * @param periodStart    The start of the reporting period
 * @param periodEnd      The end of the reporting period
 * @param reportType     The type of MeasureReport to generate
 * @param subject        the subject to use for the evaluation
 * @param practitioner   the practitioner to use for the evaluation
 * @param lastReceivedOn the date the results of this measure were last
 *                       received.
 * @param productLine    the productLine (e.g. Medicare, Medicaid, etc) to use
 *                       for the evaluation. This is a non-standard parameter.
 * @param additionalData the data bundle containing additional data
 * @return the calculated MeasureReport
 */
// warning for greater than 7 parameters
@SuppressWarnings("squid:S00107")
@Description(shortDefinition = "$evaluate-measure", value = "Implements the <a href=\"https://www.hl7.org/fhir/operation-measure-evaluate-measure.html\">$evaluate-measure</a> operation found in the <a href=\"http://www.hl7.org/fhir/clinicalreasoning-module.html\">FHIR Clinical Reasoning Module</a>. This implementation aims to be compatible with the CQF IG.", example = "Measure/example/$evaluate-measure?subject=Patient/123&periodStart=2019&periodEnd=2020")
@Operation(name = "$evaluate-measure", idempotent = true, type = Measure.class)
public MeasureReport evaluateMeasure(RequestDetails requestDetails, @IdParam IdType theId, @OperationParam(name = "periodStart") String periodStart, @OperationParam(name = "periodEnd") String periodEnd, @OperationParam(name = "reportType") String reportType, @OperationParam(name = "subject") String subject, @OperationParam(name = "practitioner") String practitioner, @OperationParam(name = "lastReceivedOn") String lastReceivedOn, @OperationParam(name = "productLine") String productLine, @OperationParam(name = "additionalData") Bundle additionalData) {
    Measure measure = read(theId);
    TerminologyProvider terminologyProvider = this.jpaTerminologyProviderFactory.create(requestDetails);
    DataProvider dataProvider = this.jpaDataProviderFactory.create(requestDetails, terminologyProvider);
    LibraryContentProvider libraryContentProvider = this.libraryContentProviderFactory.create(requestDetails);
    FhirDal fhirDal = this.fhirDalFactory.create(requestDetails);
    org.opencds.cqf.cql.evaluator.measure.r4.R4MeasureProcessor measureProcessor = new org.opencds.cqf.cql.evaluator.measure.r4.R4MeasureProcessor(null, this.dataProviderFactory, null, null, null, terminologyProvider, libraryContentProvider, dataProvider, fhirDal, null, this.globalLibraryCache);
    MeasureReport report = measureProcessor.evaluateMeasure(measure.getUrl(), periodStart, periodEnd, reportType, subject, null, lastReceivedOn, null, null, null, additionalData);
    if (productLine != null) {
        Extension ext = new Extension();
        ext.setUrl("http://hl7.org/fhir/us/cqframework/cqfmeasures/StructureDefinition/cqfm-productLine");
        ext.setValue(new StringType(productLine));
        report.addExtension(ext);
    }
    return report;
}

Example 19 with IdType

use of org.hl7.fhir.r5.model.IdType in project cqf-ruler by DBCG.

the class Session method applyPlanDefinition.

@Operation(name = "$apply", idempotent = true, type = PlanDefinition.class)
public CarePlan applyPlanDefinition(RequestDetails theRequest, @IdParam IdType theId, @OperationParam(name = "patient") String patientId, @OperationParam(name = "encounter") String encounterId, @OperationParam(name = "practitioner") String practitionerId, @OperationParam(name = "organization") String organizationId, @OperationParam(name = "userType") String userType, @OperationParam(name = "userLanguage") String userLanguage, @OperationParam(name = "userTaskContext") String userTaskContext, @OperationParam(name = "setting") String setting, @OperationParam(name = "settingContext") String settingContext) throws IOException, FHIRException {
    PlanDefinition planDefinition = this.planDefinitionDao.read(theId);
    if (planDefinition == null) {
        throw new IllegalArgumentException("Couldn't find PlanDefinition " + theId);
    }
    logger.info("Performing $apply operation on PlanDefinition/{}", theId);
    CarePlanBuilder builder = new CarePlanBuilder();
    builder.buildInstantiatesCanonical(planDefinition.getUrl()).buildSubject(new Reference(patientId)).buildStatus(CarePlan.CarePlanStatus.DRAFT);
    if (encounterId != null)
        builder.buildEncounter(new Reference(encounterId));
    if (practitionerId != null)
        builder.buildAuthor(new Reference(practitionerId));
    if (organizationId != null)
        builder.buildAuthor(new Reference(organizationId));
    if (userLanguage != null)
        builder.buildLanguage(userLanguage);
    // Each Group of actions shares a RequestGroup
    RequestGroupBuilder requestGroupBuilder = new RequestGroupBuilder().buildStatus().buildIntent();
    Session session = new Session(planDefinition, builder, patientId, encounterId, practitionerId, organizationId, userType, userLanguage, userTaskContext, setting, settingContext, requestGroupBuilder);
    return (CarePlan) ContainedHelper.liftContainedResourcesToParent(resolveActions(session, theRequest));
}

Example 20 with IdType

use of org.hl7.fhir.r5.model.IdType in project cqf-ruler by DBCG.

the class Session method resolveActions.

private void resolveActions(List<PlanDefinition.PlanDefinitionActionComponent> actions, Context context, String patientId, RequestGroupBuilder requestGroupBuilder, List<RequestGroup.RequestGroupActionComponent> actionComponents, RequestDetails theRequest) {
    for (PlanDefinition.PlanDefinitionActionComponent action : actions) {
        boolean conditionsMet = true;
        for (PlanDefinition.PlanDefinitionActionConditionComponent condition : action.getCondition()) {
            if (condition.getKind() == PlanDefinition.ActionConditionKind.APPLICABILITY) {
                if (!condition.hasExpression()) {
                    continue;
                }
                if (condition.hasExpression() && !condition.getExpression().hasExpression()) {
                    continue;
                }
                Object result = context.resolveExpressionRef(condition.getExpression().getExpression()).getExpression().evaluate(context);
                if (!(result instanceof Boolean)) {
                    continue;
                }
                if (!(Boolean) result) {
                    conditionsMet = false;
                }
            }
            if (conditionsMet) {
                RequestGroupActionBuilder actionBuilder = new RequestGroupActionBuilder();
                if (action.hasTitle()) {
                    actionBuilder.buildTitle(action.getTitle());
                }
                if (action.hasDescription()) {
                    actionBuilder.buildDescripition(action.getDescription());
                }
                // source
                if (action.hasDocumentation()) {
                    RelatedArtifact artifact = action.getDocumentationFirstRep();
                    RelatedArtifactBuilder artifactBuilder = new RelatedArtifactBuilder();
                    if (artifact.hasDisplay()) {
                        artifactBuilder.buildDisplay(artifact.getDisplay());
                    }
                    if (artifact.hasUrl()) {
                        artifactBuilder.buildUrl(artifact.getUrl());
                    }
                    if (artifact.hasDocument() && artifact.getDocument().hasUrl()) {
                        AttachmentBuilder attachmentBuilder = new AttachmentBuilder();
                        attachmentBuilder.buildUrl(artifact.getDocument().getUrl());
                        artifactBuilder.buildDocument(attachmentBuilder.build());
                    }
                    actionBuilder.buildDocumentation(Collections.singletonList(artifactBuilder.build()));
                }
                // TODO - uuid
                if (action.hasPrefix()) {
                    actionBuilder.buildPrefix(action.getPrefix());
                }
                if (action.hasType()) {
                    actionBuilder.buildType(action.getType());
                }
                if (action.hasDefinition()) {
                    if (action.getDefinitionCanonicalType().getValue().contains("ActivityDefinition")) {
                        ActivityDefinition activityDefinition = this.activityDefinitionDao.read(new IdType("ActivityDefinition", action.getDefinitionCanonicalType().getId()));
                        if (activityDefinition.hasDescription()) {
                            actionBuilder.buildDescripition(activityDefinition.getDescription());
                        }
                        try {
                            this.activityDefinitionApplyProvider.apply(theRequest, new IdType(action.getDefinitionCanonicalType().getId()), patientId, null, null, null, null, null, null, null, null).setId(UUID.randomUUID().toString());
                        } catch (FHIRException e) {
                            throw new RuntimeException("Error applying ActivityDefinition " + e.getMessage());
                        }
                        Parameters inParams = new Parameters();
                        inParams.addParameter().setName("patient").setValue(new StringType(patientId));
                        Parameters outParams = this.fhirContext.newRestfulGenericClient(theRequest.getFhirServerBase()).operation().onInstance(new IdDt("ActivityDefinition", action.getDefinition().getId())).named("$apply").withParameters(inParams).useHttpGet().execute();
                        List<Parameters.ParametersParameterComponent> response = outParams.getParameter();
                        Resource resource = response.get(0).getResource().setId(UUID.randomUUID().toString());
                        actionBuilder.buildResourceTarget(resource);
                        actionBuilder.buildResource(new ReferenceBuilder().buildReference(resource.getId()).build());
                    }
                }
                // on here...
                if (action.hasDynamicValue()) {
                    for (PlanDefinition.PlanDefinitionActionDynamicValueComponent dynamicValue : action.getDynamicValue()) {
                        if (dynamicValue.hasPath() && dynamicValue.hasExpression()) {
                            if (dynamicValue.getPath().endsWith("title")) {
                                // summary
                                String title = (String) context.resolveExpressionRef(dynamicValue.getExpression().getExpression()).evaluate(context);
                                actionBuilder.buildTitle(title);
                            } else if (dynamicValue.getPath().endsWith("description")) {
                                // detail
                                String description = (String) context.resolveExpressionRef(dynamicValue.getExpression().getExpression()).evaluate(context);
                                actionBuilder.buildDescripition(description);
                            } else if (dynamicValue.getPath().endsWith("extension")) {
                                // indicator
                                String extension = (String) context.resolveExpressionRef(dynamicValue.getExpression().getExpression()).evaluate(context);
                                actionBuilder.buildExtension(extension);
                            }
                        }
                    }
                }
                if (!actionBuilder.build().isEmpty()) {
                    actionComponents.add(actionBuilder.build());
                }
                if (action.hasAction()) {
                    resolveActions(action.getAction(), context, patientId, requestGroupBuilder, actionComponents, theRequest);
                }
            }
        }
    }
    requestGroupBuilder.buildAction(new ArrayList<>(actionComponents));
}