Examples with IdType org.hl7.fhir.r5.model.IdType used on opensource projects

Example 21 with IdType

use of org.hl7.fhir.r5.model.IdType in project cqf-ruler by DBCG.

the class DataOperationsProvider method dataRequirements.

@Operation(name = "$data-requirements", idempotent = true, type = Measure.class)
public Library dataRequirements(@IdParam IdType theId, @OperationParam(name = "startPeriod") String startPeriod, @OperationParam(name = "endPeriod") String endPeriod, RequestDetails theRequestDetails) throws InternalErrorException, FHIRException {
    Measure measure = read(theId, theRequestDetails);
    Library library = getLibraryFromMeasure(measure, theRequestDetails);
    if (library == null) {
        throw new RuntimeException("Could not load measure library.");
    }
    // TODO: Pass startPeriod and endPeriod as parameters to the data requirements operation
    return processDataRequirements(measure, library, theRequestDetails);
}

Example 22 with IdType

use of org.hl7.fhir.r5.model.IdType in project cqf-ruler by DBCG.

the class DataOperationsProvider method getLibraryFromMeasure.

public Library getLibraryFromMeasure(Measure measure, RequestDetails theRequestDetails) {
    Iterator<Reference> var6 = measure.getLibrary().iterator();
    String libraryIdOrCanonical = null;
    // use the first library
    while (var6.hasNext() && libraryIdOrCanonical == null) {
        Reference ref = var6.next();
        if (ref != null) {
            libraryIdOrCanonical = ref.getReference();
        }
    }
    Library library = read(new IdType(libraryIdOrCanonical), theRequestDetails);
    if (library == null) {
        library = search(Library.class, Searches.byCanonical(libraryIdOrCanonical), theRequestDetails).firstOrNull();
    }
    return library;
}

Example 23 with IdType

use of org.hl7.fhir.r5.model.IdType in project cqf-ruler by DBCG.

the class Session method resolveDefinition.

private Resource resolveDefinition(RequestDetails theRequest, Session session, PlanDefinition.PlanDefinitionActionComponent action) {
    Resource result = null;
    if (action.hasDefinition()) {
        logger.debug("Resolving definition: {}", action.getDefinition().getReference());
        Reference definition = action.getDefinition();
        if (definition.getId().contains(session.getPlanDefinition().fhirType())) {
            IdType id = new IdType(definition.getId());
            CarePlan plan;
            try {
                plan = applyPlanDefinition(theRequest, id, session.getPatientId(), session.getEncounterId(), session.getPractitionerId(), session.getOrganizationId(), session.getUserType(), session.getUserLanguage(), session.getUserTaskContext(), session.getSetting(), session.getSettingContext());
                if (plan.getId() == null) {
                    plan.setId(UUID.randomUUID().toString());
                }
                // Add an action to the request group which points to this CarePlan
                session.getRequestGroupBuilder().buildContained(plan).addAction(new RequestGroupActionBuilder().buildResource(new Reference("#" + plan.getId())).build());
                for (Reference r : plan.getDefinition()) {
                    session.getCarePlanBuilder().buildDefinition(r);
                }
                result = plan;
            } catch (IOException e) {
                e.printStackTrace();
                logger.error("nested plan failed");
            }
        } else {
            try {
                if (action.getDefinition().getReferenceElement().getIdPart().startsWith("#")) {
                    result = this.activityDefinitionApplyProvider.resolveActivityDefinition((ActivityDefinition) resolveContained(session.getPlanDefinition(), action.getDefinition().getReferenceElement().getIdPart()), session.getPatientId(), session.getPractitionerId(), session.getOrganizationId(), theRequest);
                } else {
                    result = this.activityDefinitionApplyProvider.apply(theRequest, new IdType(action.getDefinition().getReferenceElement().getIdPart()), session.getPatientId(), session.getEncounterId(), session.getPractitionerId(), session.getOrganizationId(), null, session.getUserLanguage(), session.getUserTaskContext(), session.getSetting(), session.getSettingContext());
                }
                if (result.getId() == null) {
                    logger.warn("ActivityDefinition {} returned resource with no id, setting one", action.getDefinition().getReferenceElement().getIdPart());
                    result.setId(UUID.randomUUID().toString());
                }
                session.getRequestGroupBuilder().buildContained(result).addAction(new RequestGroupActionBuilder().buildResource(new Reference("#" + result.getId())).build());
            } catch (Exception e) {
                logger.error("ERROR: ActivityDefinition {} could not be applied and threw exception {}", action.getDefinition(), e.toString());
            }
        }
    }
    return result;
}

Example 24 with IdType

use of org.hl7.fhir.r5.model.IdType in project cqf-ruler by DBCG.

the class Session method applyPlanDefinition.

@Operation(name = "$apply", idempotent = true, type = PlanDefinition.class)
public CarePlan applyPlanDefinition(RequestDetails theRequest, @IdParam IdType theId, @OperationParam(name = "patient") String patientId, @OperationParam(name = "encounter") String encounterId, @OperationParam(name = "practitioner") String practitionerId, @OperationParam(name = "organization") String organizationId, @OperationParam(name = "userType") String userType, @OperationParam(name = "userLanguage") String userLanguage, @OperationParam(name = "userTaskContext") String userTaskContext, @OperationParam(name = "setting") String setting, @OperationParam(name = "settingContext") String settingContext) throws IOException, FHIRException {
    PlanDefinition planDefinition = this.planDefinitionDao.read(theId);
    if (planDefinition == null) {
        throw new IllegalArgumentException("Couldn't find PlanDefinition " + theId);
    }
    logger.info("Performing $apply operation on PlanDefinition/{}", theId);
    CarePlanBuilder builder = new CarePlanBuilder();
    builder.buildDefinition(new Reference(planDefinition.getIdElement().getIdPart())).buildSubject(new Reference(patientId)).buildStatus(CarePlan.CarePlanStatus.DRAFT);
    if (encounterId != null)
        builder.buildContext(new Reference(encounterId));
    if (practitionerId != null)
        builder.buildAuthor(new Reference(practitionerId));
    if (organizationId != null)
        builder.buildAuthor(new Reference(organizationId));
    if (userLanguage != null)
        builder.buildLanguage(userLanguage);
    // Each Group of actions shares a RequestGroup
    RequestGroupBuilder requestGroupBuilder = new RequestGroupBuilder().buildStatus().buildIntent();
    Session session = new Session(planDefinition, builder, patientId, encounterId, practitionerId, organizationId, userType, userLanguage, userTaskContext, setting, settingContext, requestGroupBuilder);
    return (CarePlan) ContainedHelper.liftContainedResourcesToParent(resolveActions(theRequest, session));
}

Example 25 with IdType

use of org.hl7.fhir.r5.model.IdType in project cqf-ruler by DBCG.

the class ExpressionEvaluation method setupContext.

private Context setupContext(DomainResource instance, String cql, String patientId, Boolean aliasedExpression, RequestDetails theRequest) {
    JpaFhirDal jpaFhirDal = jpaFhirDalFactory.create(theRequest);
    List<CanonicalType> libraries = getLibraryReferences(instance, theRequest);
    String fhirVersion = this.fhirContext.getVersion().getVersion().getFhirVersionString();
    // Remove LocalLibrary from cache first...
    VersionedIdentifier localLibraryIdentifier = new VersionedIdentifier().withId("LocalLibrary");
    globalLibraryCache.remove(localLibraryIdentifier);
    // temporary LibraryLoader to resolve library dependencies when building
    // includes
    LibraryLoader tempLibraryLoader = libraryLoaderFactory.create(new ArrayList<LibraryContentProvider>(Arrays.asList(jpaLibraryContentProviderFactory.create(theRequest))));
    String source = "";
    if (aliasedExpression) {
        if (libraries.size() != 1) {
            throw new RuntimeException("If an aliased expression is provided, there must be exactly one primary Library");
        }
        VersionedIdentifier vi = getVersionedIdentifierFromCanonical(libraries.get(0));
        // Still not the best way to build include, but at least checks dal for an
        // existing library
        // Check if id works for LibraryRetrieval
        org.cqframework.cql.elm.execution.Library executionLibrary = null;
        try {
            executionLibrary = tempLibraryLoader.load(vi);
        } catch (Exception e) {
        // log error
        }
        if (executionLibrary == null) {
            Library library = (Library) jpaFhirDal.read(new IdType("Library", Canonicals.getIdPart(libraries.get(0))));
            vi.setId(library.getName());
            if (library.getVersion() != null) {
                vi.setVersion(library.getVersion());
            }
        }
        source = String.format("library LocalLibrary using FHIR version '" + fhirVersion + "' include FHIRHelpers version '" + fhirVersion + "' called FHIRHelpers %s parameter %s %s parameter \"%%context\" %s define Expression: %s", buildIncludes(tempLibraryLoader, jpaFhirDal, libraries, theRequest), instance.fhirType(), instance.fhirType(), instance.fhirType(), vi.getId() + ".\"" + cql + "\"");
    } else {
        source = String.format("library LocalLibrary using FHIR version '" + fhirVersion + "' include FHIRHelpers version '" + fhirVersion + "' called FHIRHelpers %s parameter %s %s parameter \"%%context\" %s define Expression: %s", buildIncludes(tempLibraryLoader, jpaFhirDal, libraries, theRequest), instance.fhirType(), instance.fhirType(), instance.fhirType(), cql);
    }
    LibraryLoader libraryLoader = libraryLoaderFactory.create(new ArrayList<LibraryContentProvider>(Arrays.asList(jpaLibraryContentProviderFactory.create(theRequest), new InMemoryLibraryContentProvider(Arrays.asList(source)))));
    // resolve execution context
    return setupContext(instance, patientId, libraryLoader, theRequest);
}