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Example 6 with IdType

use of org.hl7.fhir.r5.model.IdType in project beneficiary-fhir-data by CMSgov.

the class ExplanationOfBenefitResourceProviderIT method readEobForExistingDMEClaim.

/**
 * Verifies that {@link ExplanationOfBenefitResourceProvider#read(IdType, RequestDetails)} works
 * as expected for a {@link DMEClaim}-derived {@link ExplanationOfBenefit} that does exist in the
 * DB.
 *
 * @throws FHIRException (indicates test failure)
 */
@Test
public void readEobForExistingDMEClaim() throws FHIRException {
    List<Object> loadedRecords = ServerTestUtils.get().loadData(Arrays.asList(StaticRifResourceGroup.SAMPLE_A.getResources()));
    IGenericClient fhirClient = ServerTestUtils.get().createFhirClient();
    DMEClaim claim = loadedRecords.stream().filter(r -> r instanceof DMEClaim).map(r -> (DMEClaim) r).findFirst().get();
    ExplanationOfBenefit eob = fhirClient.read().resource(ExplanationOfBenefit.class).withId(TransformerUtils.buildEobId(ClaimType.DME, claim.getClaimId())).execute();
    assertNotNull(eob);
    DMEClaimTransformerTest.assertMatches(claim, eob, Optional.empty());
}
Also used : DMEClaim(gov.cms.bfd.model.rif.DMEClaim) Arrays(java.util.Arrays) Bundle(org.hl7.fhir.dstu3.model.Bundle) Date(java.util.Date) Constants(ca.uhn.fhir.rest.api.Constants) InpatientClaim(gov.cms.bfd.model.rif.InpatientClaim) DateTimeDt(ca.uhn.fhir.model.primitive.DateTimeDt) PartDEvent(gov.cms.bfd.model.rif.PartDEvent) SNFClaim(gov.cms.bfd.model.rif.SNFClaim) DateRangeParam(ca.uhn.fhir.rest.param.DateRangeParam) BeforeAll(org.junit.jupiter.api.BeforeAll) IBaseResource(org.hl7.fhir.instance.model.api.IBaseResource) BeneficiaryHistory(gov.cms.bfd.model.rif.BeneficiaryHistory) IGenericClient(ca.uhn.fhir.rest.client.api.IGenericClient) Triple(org.apache.commons.lang3.tuple.Triple) OutpatientClaim(gov.cms.bfd.model.rif.OutpatientClaim) IdDt(ca.uhn.fhir.model.primitive.IdDt) ExplanationOfBenefit(org.hl7.fhir.dstu3.model.ExplanationOfBenefit) InvalidRequestException(ca.uhn.fhir.rest.server.exceptions.InvalidRequestException) Instant(java.time.Instant) Collectors(java.util.stream.Collectors) Test(org.junit.jupiter.api.Test) Beneficiary(gov.cms.bfd.model.rif.Beneficiary) List(java.util.List) TransformerConstants(gov.cms.bfd.server.war.commons.TransformerConstants) EntityManagerFactory(javax.persistence.EntityManagerFactory) Assertions.assertTrue(org.junit.jupiter.api.Assertions.assertTrue) CarrierClaim(gov.cms.bfd.model.rif.CarrierClaim) Optional(java.util.Optional) TokenAndListParam(ca.uhn.fhir.rest.param.TokenAndListParam) Assertions.assertThrows(org.junit.jupiter.api.Assertions.assertThrows) Assertions.assertNotNull(org.junit.jupiter.api.Assertions.assertNotNull) Assertions.assertNull(org.junit.jupiter.api.Assertions.assertNull) RequestHeaders(gov.cms.bfd.server.war.commons.RequestHeaders) IBaseBundle(org.hl7.fhir.instance.model.api.IBaseBundle) ArrayList(java.util.ArrayList) HHAClaim(gov.cms.bfd.model.rif.HHAClaim) PipelineTestUtils(gov.cms.bfd.pipeline.sharedutils.PipelineTestUtils) RequestDetails(ca.uhn.fhir.rest.api.server.RequestDetails) ImmutableList(com.google.common.collect.ImmutableList) ReferenceParam(ca.uhn.fhir.rest.param.ReferenceParam) DMEClaim(gov.cms.bfd.model.rif.DMEClaim) Assertions.assertEquals(org.junit.jupiter.api.Assertions.assertEquals) ResourceNotFoundException(ca.uhn.fhir.rest.server.exceptions.ResourceNotFoundException) StaticRifResourceGroup(gov.cms.bfd.model.rif.samples.StaticRifResourceGroup) ServerTestUtils(gov.cms.bfd.server.war.ServerTestUtils) StringClientParam(ca.uhn.fhir.rest.gclient.StringClientParam) CommonHeaders(gov.cms.bfd.server.war.commons.CommonHeaders) ImmutableTriple(org.apache.commons.lang3.tuple.ImmutableTriple) TokenClientParam(ca.uhn.fhir.rest.gclient.TokenClientParam) HospiceClaim(gov.cms.bfd.model.rif.HospiceClaim) EntityManager(javax.persistence.EntityManager) MedicareBeneficiaryIdHistory(gov.cms.bfd.model.rif.MedicareBeneficiaryIdHistory) AfterEach(org.junit.jupiter.api.AfterEach) ChronoUnit(java.time.temporal.ChronoUnit) Patient(org.hl7.fhir.dstu3.model.Patient) FHIRException(org.hl7.fhir.exceptions.FHIRException) IGenericClient(ca.uhn.fhir.rest.client.api.IGenericClient) ExplanationOfBenefit(org.hl7.fhir.dstu3.model.ExplanationOfBenefit) Test(org.junit.jupiter.api.Test)

Example 7 with IdType

use of org.hl7.fhir.r5.model.IdType in project kindling by HL7.

the class ResourceParser method parseED.

private void parseED(ProfileUtilities pu, ElementDefn ed, ElementDefinition focus, StructureDefinition sd, String parentName) throws IOException {
    ed.setMinCardinality(focus.getMin());
    ed.setMaxCardinality("*".equals(focus.getMax()) ? Integer.MAX_VALUE : Integer.parseInt(focus.getMax()));
    ed.setIsModifier(focus.getIsModifier());
    ed.setModifierReason(focus.getIsModifierReason());
    ed.setMustSupport(focus.getMustSupport());
    ed.setSummaryItem(focus.getIsSummary());
    ed.setRegex(ToolingExtensions.readStringExtension(focus, ToolingExtensions.EXT_REGEX));
    ed.setXmlAttribute(focus.hasRepresentation(PropertyRepresentation.XMLATTR));
    if (ToolingExtensions.hasExtension(focus, BuildExtensions.EXT_UML_DIR)) {
        ed.setUmlDir(ToolingExtensions.readStringExtension(focus, BuildExtensions.EXT_UML_DIR));
    }
    if (ToolingExtensions.hasExtension(focus, BuildExtensions.EXT_UML_BREAK)) {
        ed.setUmlBreak(ToolingExtensions.readBoolExtension(focus, BuildExtensions.EXT_UML_BREAK));
    }
    if (BuildExtensions.hasExtension(focus, BuildExtensions.EXT_SVG)) {
        String svg = BuildExtensions.readStringExtension(focus, BuildExtensions.EXT_SVG);
        if (svg.contains("w=")) {
            ed.setSvgWidth(Integer.parseInt(svg.substring(svg.indexOf("w=") + 2)));
            svg = svg.substring(0, svg.indexOf(";"));
        }
        ed.setSvgLeft(Integer.parseInt(svg.substring(0, svg.indexOf(","))));
        ed.setSvgTop(Integer.parseInt(svg.substring(svg.indexOf(",") + 1)));
    }
    ed.setName(tail(focus.getPath()));
    ed.setShortDefn(focus.getShort());
    ed.setDefinition(focus.getDefinition());
    ed.setRequirements(focus.getRequirements());
    ed.setComments(focus.getComment());
    if (BuildExtensions.hasExtension(focus, BuildExtensions.EXT_TODO)) {
        ed.setTodo(BuildExtensions.readStringExtension(focus, BuildExtensions.EXT_TODO));
    }
    if (BuildExtensions.hasExtension(focus, BuildExtensions.EXT_COMMITTEE_NOTES)) {
        ed.setCommitteeNotes(BuildExtensions.readStringExtension(focus, BuildExtensions.EXT_COMMITTEE_NOTES));
    }
    if (BuildExtensions.hasExtension(focus, BuildExtensions.EXT_HINT)) {
        ed.setDisplayHint(BuildExtensions.readStringExtension(focus, BuildExtensions.EXT_HINT));
    }
    if (focus.hasExtension(BuildExtensions.EXT_NO_BINDING)) {
        ed.setNoBindingAllowed(focus.getExtensionString(BuildExtensions.EXT_NO_BINDING).equals("true"));
    }
    for (StringType t : focus.getAlias()) {
        ed.getAliases().add(t.getValue());
    }
    if (focus.hasMaxLength()) {
        ed.setMaxLength(Integer.toString(focus.getMaxLength()));
    }
    ed.setExample(focus.getExampleFirstRep().getValue());
    ed.setMeaningWhenMissing(focus.getMeaningWhenMissing());
    if (ToolingExtensions.hasExtension(focus, BuildExtensions.EXT_TRANSLATABLE)) {
        ed.setTranslatable(ToolingExtensions.readBoolExtension(focus, BuildExtensions.EXT_TRANSLATABLE));
    }
    ed.setOrderMeaning(focus.getOrderMeaning());
    if (BuildExtensions.hasExtension(focus, BuildExtensions.EXT_STANDARDS_STATUS)) {
        ed.setStandardsStatus(StandardsStatus.fromCode(BuildExtensions.readStringExtension(focus, BuildExtensions.EXT_STANDARDS_STATUS)));
    }
    if (BuildExtensions.hasExtension(focus, BuildExtensions.EXT_NORMATIVE_VERSION)) {
        ed.setNormativeVersion(BuildExtensions.readStringExtension(focus, BuildExtensions.EXT_NORMATIVE_VERSION));
    }
    for (ElementDefinitionConstraintComponent cst : focus.getConstraint()) {
        Invariant inv = new Invariant();
        inv.setContext(focus.getPath());
        inv.setEnglish(cst.getHuman());
        if (cst.hasExtension(BuildExtensions.EXT_OCL)) {
            inv.setOcl(cst.getExtensionString(BuildExtensions.EXT_OCL));
        }
        inv.setXpath(cst.getXpath());
        inv.setId(cst.getKey());
        if (cst.hasExtension(BuildExtensions.EXT_FIXED_NAME)) {
            inv.setFixedName(cst.getExtensionString(BuildExtensions.EXT_FIXED_NAME));
        }
        inv.setSeverity(cst.getSeverity().toCode());
        if (cst.hasExtension(BuildExtensions.EXT_BEST_PRACTICE)) {
            inv.setSeverity("best-practice");
        }
        if (cst.hasExtension(BuildExtensions.EXT_TURTLE)) {
            inv.setTurtle(cst.getExtensionString(BuildExtensions.EXT_TURTLE));
        }
        inv.setRequirements(cst.getRequirements());
        inv.setExpression(cst.getExpression());
        if (cst.hasExtension(BuildExtensions.EXT_BEST_PRACTICE_EXPLANATION)) {
            inv.setExplanation(cst.getExtensionString(BuildExtensions.EXT_BEST_PRACTICE_EXPLANATION));
        }
        ed.getInvariants().put(inv.getId(), inv);
        invariants.put(inv.getId(), inv);
    }
    for (IdType cnd : focus.getCondition()) {
        Invariant inv = invariants.get(cnd.primitiveValue());
        if (inv == null) {
            System.out.println("Unable to find invariant " + cnd.primitiveValue());
        } else {
            ed.getStatedInvariants().add(inv);
        }
    }
    for (ElementDefinitionMappingComponent map : focus.getMapping()) {
        String uri = getMappingUri(sd, map.getIdentity());
        if ("http://hl7.org/fhir/fivews".equals(uri)) {
            ed.setW5(reverseW5(map.getMap()));
        } else {
            ed.getMappings().put(uri, map.getMap());
        }
    }
    if (focus.hasContentReference()) {
        ed.getTypes().add(new TypeRef("@" + focus.getContentReference().substring(1)));
    } else {
        for (TypeRefComponent tr : focus.getType()) {
            if (!Utilities.existsInList(tr.getCode(), "Element", "BackboneElement")) {
                TypeRef t = new TypeRef();
                ed.getTypes().add(t);
                if (tr.hasExtension("http://hl7.org/fhir/StructureDefinition/structuredefinition-fhir-type")) {
                    t.setName(tr.getExtensionString("http://hl7.org/fhir/StructureDefinition/structuredefinition-fhir-type"));
                } else {
                    t.setName(tr.getCode());
                }
                if (ToolingExtensions.hasExtension(tr, BuildExtensions.EXT_HIERARCHY)) {
                    ed.setHierarchy(ToolingExtensions.readBoolExtension(tr, BuildExtensions.EXT_HIERARCHY));
                }
                for (CanonicalType u : tr.getProfile()) {
                    t.setProfile(u.getValue().replace("http://hl7.org/fhir/StructureDefinition/", ""));
                }
                for (CanonicalType u : tr.getTargetProfile()) {
                    String s = u.getValue().replace("http://hl7.org/fhir/StructureDefinition/", "");
                    if ("Resource".equals(s)) {
                        t.getParams().add("Any");
                    } else {
                        t.getParams().add(s);
                    }
                }
                if (t.getName().equals("Quantity") && "SimpleQuantity".equals(t.getProfile())) {
                    t.setName("SimpleQuantity");
                    t.setProfile(null);
                }
                if ("Resource".equals(t.getProfile())) {
                    t.setProfile("Any");
                }
                if (t.getParams().toString().equals("[ActivityDefinition, EventDefinition, EvidenceVariable, Measure, OperationDefinition, PlanDefinition, Questionnaire, SubscriptionTopic]")) {
                    t.getParams().clear();
                    t.getParams().add("Definition");
                }
            }
        }
        if (ed.getTypes().size() == STAR_TYPES_COUNT) {
            ed.getTypes().clear();
            ed.getTypes().add(new TypeRef("*"));
        }
    }
    String name = parentName + Utilities.capitalize(ed.getName());
    if (focus.hasExtension("http://hl7.org/fhir/StructureDefinition/structuredefinition-explicit-type-name")) {
        ed.setStatedType(focus.getExtensionString("http://hl7.org/fhir/StructureDefinition/structuredefinition-explicit-type-name"));
        ed.setDeclaredTypeName(ed.getStatedType());
    } else if (ed.getTypes().isEmpty() && !focus.hasContentReference()) {
        ed.setDeclaredTypeName(name + "Component");
    }
    if (focus.hasBinding()) {
        ed.setBinding(parseBinding(focus.getBinding()));
    }
    for (ElementDefinition child : pu.getChildList(sd, focus, true, false)) {
        ElementDefn c = new ElementDefn();
        ed.getElements().add(c);
        parseED(pu, c, child, sd, name);
    }
// todo:
// private ElementDefinition derivation;
}
Also used : Invariant(org.hl7.fhir.definitions.model.Invariant) StringType(org.hl7.fhir.r5.model.StringType) TypeRefComponent(org.hl7.fhir.r5.model.ElementDefinition.TypeRefComponent) TypeRef(org.hl7.fhir.definitions.model.TypeRef) ElementDefn(org.hl7.fhir.definitions.model.ElementDefn) ElementDefinition(org.hl7.fhir.r5.model.ElementDefinition) ElementDefinitionConstraintComponent(org.hl7.fhir.r5.model.ElementDefinition.ElementDefinitionConstraintComponent) ElementDefinitionMappingComponent(org.hl7.fhir.r5.model.ElementDefinition.ElementDefinitionMappingComponent) CanonicalType(org.hl7.fhir.r5.model.CanonicalType) IdType(org.hl7.fhir.r5.model.IdType)

Example 8 with IdType

use of org.hl7.fhir.r5.model.IdType in project cqf-ruler by DBCG.

the class CqlExecutionProvider method resolveLibraryName.

private String resolveLibraryName(RequestDetails requestDetails, JpaFhirDal jpaFhirDal, LibraryParameter libraryParameter, LibraryLoader libraryLoader) {
    String libraryName;
    if (libraryParameter.name == null) {
        VersionedIdentifier libraryIdentifier = new VersionedIdentifier().withId(Canonicals.getIdPart(libraryParameter.url));
        String version = Canonicals.getVersion(libraryParameter.url);
        if (version != null) {
            libraryIdentifier.setVersion(version);
        }
        org.cqframework.cql.elm.execution.Library executionLibrary = null;
        try {
            executionLibrary = libraryLoader.load(libraryIdentifier);
        } catch (Exception e) {
            logger.debug("Unable to load executable library {}", libraryParameter.name);
        }
        if (executionLibrary != null) {
            libraryName = executionLibrary.getIdentifier().getId();
        } else {
            Library library = (Library) jpaFhirDal.read(new IdType("Library", libraryIdentifier.getId()));
            libraryName = library.getName();
        }
    } else {
        libraryName = libraryParameter.name;
    }
    return libraryName;
}
Also used : VersionedIdentifier(org.cqframework.cql.elm.execution.VersionedIdentifier) Library(org.hl7.fhir.dstu3.model.Library) NotImplementedException(org.apache.commons.lang3.NotImplementedException) IdType(org.hl7.fhir.dstu3.model.IdType)

Example 9 with IdType

use of org.hl7.fhir.r5.model.IdType in project cqf-ruler by DBCG.

the class LibraryEvaluationProvider method evaluate.

@SuppressWarnings({ "unchecked" })
@Operation(name = "$evaluate", idempotent = true, type = Library.class)
public Bundle evaluate(@IdParam IdType theId, @OperationParam(name = "patientId") String patientId, @OperationParam(name = "periodStart") String periodStart, @OperationParam(name = "periodEnd") String periodEnd, @OperationParam(name = "productLine") String productLine, @OperationParam(name = "terminologyEndpoint") Endpoint terminologyEndpoint, @OperationParam(name = "dataEndpoint") Endpoint dataEndpoint, @OperationParam(name = "context") String contextParam, @OperationParam(name = "executionResults") String executionResults, @OperationParam(name = "parameters") Parameters parameters, @OperationParam(name = "additionalData") Bundle additionalData, RequestDetails theRequestDetails) {
    log.info("Library evaluation started..");
    if (patientId == null && contextParam != null && contextParam.equals("Patient")) {
        log.error("Patient id null");
        throw new IllegalArgumentException("Must specify a patientId when executing in Patient context.");
    }
    Bundle libraryBundle = new Bundle();
    Library theResource = null;
    if (additionalData != null) {
        for (Bundle.BundleEntryComponent entry : additionalData.getEntry()) {
            if (entry.getResource().fhirType().equals("Library")) {
                libraryBundle.addEntry(entry);
                if (entry.getResource().getIdElement().equals(theId)) {
                    theResource = (Library) entry.getResource();
                }
            }
        }
    }
    if (theResource == null) {
        theResource = read(theId, theRequestDetails);
    }
    VersionedIdentifier libraryIdentifier = new VersionedIdentifier().withId(theResource.getName()).withVersion(theResource.getVersion());
    TerminologyProvider terminologyProvider;
    if (terminologyEndpoint != null) {
        IGenericClient client = Clients.forEndpoint(getFhirContext(), terminologyEndpoint);
        terminologyProvider = new R4FhirTerminologyProvider(client);
    } else {
        terminologyProvider = myJpaTerminologyProviderFactory.create(new SystemRequestDetails());
    }
    DataProvider dataProvider;
    if (dataEndpoint != null) {
        List<RetrieveProvider> retrieveProviderList = new ArrayList<>();
        IGenericClient client = Clients.forEndpoint(dataEndpoint);
        RestFhirRetrieveProvider retriever = new RestFhirRetrieveProvider(new SearchParameterResolver(getFhirContext()), client);
        retriever.setTerminologyProvider(terminologyProvider);
        if (terminologyEndpoint == null || (terminologyEndpoint != null && !terminologyEndpoint.getAddress().equals(dataEndpoint.getAddress()))) {
            retriever.setExpandValueSets(true);
        }
        retrieveProviderList.add(retriever);
        if (additionalData != null) {
            BundleRetrieveProvider bundleProvider = new BundleRetrieveProvider(getFhirContext(), additionalData);
            bundleProvider.setTerminologyProvider(terminologyProvider);
            retrieveProviderList.add(bundleProvider);
            PriorityRetrieveProvider priorityProvider = new PriorityRetrieveProvider(retrieveProviderList);
            dataProvider = new CompositeDataProvider(myModelResolver, priorityProvider);
        } else {
            dataProvider = new CompositeDataProvider(myModelResolver, retriever);
        }
    } else {
        List<RetrieveProvider> retrieveProviderList = new ArrayList<>();
        JpaFhirRetrieveProvider retriever = new JpaFhirRetrieveProvider(getDaoRegistry(), new SearchParameterResolver(getFhirContext()));
        retriever.setTerminologyProvider(terminologyProvider);
        // Assume it's a different server, therefore need to expand.
        if (terminologyEndpoint != null) {
            retriever.setExpandValueSets(true);
        }
        retrieveProviderList.add(retriever);
        if (additionalData != null) {
            BundleRetrieveProvider bundleProvider = new BundleRetrieveProvider(getFhirContext(), additionalData);
            bundleProvider.setTerminologyProvider(terminologyProvider);
            retrieveProviderList.add(bundleProvider);
            PriorityRetrieveProvider priorityProvider = new PriorityRetrieveProvider(retrieveProviderList);
            dataProvider = new CompositeDataProvider(myModelResolver, priorityProvider);
        } else {
            dataProvider = new CompositeDataProvider(myModelResolver, retriever);
        }
    }
    LibraryContentProvider bundleLibraryProvider = new BundleFhirLibraryContentProvider(this.getFhirContext(), libraryBundle, adapterFactory, libraryVersionSelector);
    LibraryContentProvider jpaLibraryContentProvider = this.myJpaLibraryContentProviderFactory.create(theRequestDetails);
    List<LibraryContentProvider> sourceProviders = new ArrayList<LibraryContentProvider>(Arrays.asList(bundleLibraryProvider, jpaLibraryContentProvider));
    LibraryLoader libraryLoader = this.myLibraryLoaderFactory.create(sourceProviders);
    CqlEngine engine = new CqlEngine(libraryLoader, Collections.singletonMap("http://hl7.org/fhir", dataProvider), terminologyProvider);
    Map<String, Object> resolvedParameters = new HashMap<>();
    if (parameters != null) {
        for (Parameters.ParametersParameterComponent pc : parameters.getParameter()) {
            resolvedParameters.put(pc.getName(), pc.getValue());
        }
    }
    if (periodStart != null && periodEnd != null) {
        // resolve the measurement period
        Interval measurementPeriod = new Interval(Operations.resolveRequestDate(periodStart, true), true, Operations.resolveRequestDate(periodEnd, false), true);
        resolvedParameters.put("Measurement Period", new Interval(DateTime.fromJavaDate((Date) measurementPeriod.getStart()), true, DateTime.fromJavaDate((Date) measurementPeriod.getEnd()), true));
    }
    if (productLine != null) {
        resolvedParameters.put("Product Line", productLine);
    }
    EvaluationResult evalResult = engine.evaluate(libraryIdentifier, null, Pair.of(contextParam != null ? contextParam : "Unspecified", patientId == null ? "null" : patientId), resolvedParameters, this.getDebugMap());
    List<Resource> results = new ArrayList<>();
    FhirMeasureBundler bundler = new FhirMeasureBundler();
    if (evalResult != null && evalResult.expressionResults != null) {
        for (Map.Entry<String, Object> def : evalResult.expressionResults.entrySet()) {
            Parameters result = new Parameters();
            try {
                result.setId(def.getKey());
                Object res = def.getValue();
                if (res == null) {
                    result.addParameter().setName("value").setValue(new StringType("null"));
                } else if (res instanceof List<?>) {
                    if (((List<?>) res).size() > 0 && ((List<?>) res).get(0) instanceof Resource) {
                        if (executionResults != null && executionResults.equals("Summary")) {
                            result.addParameter().setName("value").setValue(new StringType(((Resource) ((List<?>) res).get(0)).getIdElement().getResourceType() + "/" + ((Resource) ((List<?>) res).get(0)).getIdElement().getIdPart()));
                        } else {
                            result.addParameter().setName("value").setResource(bundler.bundle((Iterable<Resource>) res, theRequestDetails.getFhirServerBase()));
                        }
                    } else {
                        result.addParameter().setName("value").setValue(new StringType(res.toString()));
                    }
                } else if (res instanceof Iterable) {
                    result.addParameter().setName("value").setResource(bundler.bundle((Iterable<Resource>) res, theRequestDetails.getFhirServerBase()));
                } else if (res instanceof Resource) {
                    if (executionResults != null && executionResults.equals("Summary")) {
                        result.addParameter().setName("value").setValue(new StringType(((Resource) res).getIdElement().getResourceType() + "/" + ((Resource) res).getIdElement().getIdPart()));
                    } else {
                        result.addParameter().setName("value").setResource((Resource) res);
                    }
                } else if (res instanceof Type) {
                    result.addParameter().setName("value").setValue((Type) res);
                } else {
                    result.addParameter().setName("value").setValue(new StringType(res.toString()));
                }
                result.addParameter().setName("resultType").setValue(new StringType(resolveType(res)));
            } catch (RuntimeException re) {
                re.printStackTrace();
                String message = re.getMessage() != null ? re.getMessage() : re.getClass().getName();
                result.addParameter().setName("error").setValue(new StringType(message));
            }
            results.add(result);
        }
    }
    return bundler.bundle(results, theRequestDetails.getFhirServerBase());
}
Also used : HashMap(java.util.HashMap) StringType(org.hl7.fhir.r4.model.StringType) IGenericClient(ca.uhn.fhir.rest.client.api.IGenericClient) ArrayList(java.util.ArrayList) LibraryLoader(org.opencds.cqf.cql.engine.execution.LibraryLoader) CompositeDataProvider(org.opencds.cqf.cql.engine.data.CompositeDataProvider) DataProvider(org.opencds.cqf.cql.engine.data.DataProvider) VersionedIdentifier(org.cqframework.cql.elm.execution.VersionedIdentifier) BundleRetrieveProvider(org.opencds.cqf.cql.evaluator.engine.retrieve.BundleRetrieveProvider) RestFhirRetrieveProvider(org.opencds.cqf.cql.engine.fhir.retrieve.RestFhirRetrieveProvider) SystemRequestDetails(ca.uhn.fhir.jpa.partition.SystemRequestDetails) PriorityRetrieveProvider(org.opencds.cqf.cql.evaluator.engine.retrieve.PriorityRetrieveProvider) List(java.util.List) ArrayList(java.util.ArrayList) R4FhirTerminologyProvider(org.opencds.cqf.cql.engine.fhir.terminology.R4FhirTerminologyProvider) FhirMeasureBundler(org.opencds.cqf.ruler.cpg.r4.util.FhirMeasureBundler) JpaFhirRetrieveProvider(org.opencds.cqf.ruler.cql.JpaFhirRetrieveProvider) LibraryContentProvider(org.opencds.cqf.cql.evaluator.cql2elm.content.LibraryContentProvider) BundleFhirLibraryContentProvider(org.opencds.cqf.cql.evaluator.cql2elm.content.fhir.BundleFhirLibraryContentProvider) Parameters(org.hl7.fhir.r4.model.Parameters) BundleFhirLibraryContentProvider(org.opencds.cqf.cql.evaluator.cql2elm.content.fhir.BundleFhirLibraryContentProvider) Bundle(org.hl7.fhir.r4.model.Bundle) Resource(org.hl7.fhir.r4.model.Resource) CqlEngine(org.opencds.cqf.cql.engine.execution.CqlEngine) EvaluationResult(org.opencds.cqf.cql.engine.execution.EvaluationResult) StringType(org.hl7.fhir.r4.model.StringType) Type(org.hl7.fhir.r4.model.Type) IdType(org.hl7.fhir.r4.model.IdType) SearchParameterResolver(org.opencds.cqf.cql.engine.fhir.searchparam.SearchParameterResolver) TerminologyProvider(org.opencds.cqf.cql.engine.terminology.TerminologyProvider) R4FhirTerminologyProvider(org.opencds.cqf.cql.engine.fhir.terminology.R4FhirTerminologyProvider) CompositeDataProvider(org.opencds.cqf.cql.engine.data.CompositeDataProvider) Library(org.hl7.fhir.r4.model.Library) RestFhirRetrieveProvider(org.opencds.cqf.cql.engine.fhir.retrieve.RestFhirRetrieveProvider) JpaFhirRetrieveProvider(org.opencds.cqf.ruler.cql.JpaFhirRetrieveProvider) RetrieveProvider(org.opencds.cqf.cql.engine.retrieve.RetrieveProvider) BundleRetrieveProvider(org.opencds.cqf.cql.evaluator.engine.retrieve.BundleRetrieveProvider) PriorityRetrieveProvider(org.opencds.cqf.cql.evaluator.engine.retrieve.PriorityRetrieveProvider) Map(java.util.Map) DebugMap(org.opencds.cqf.cql.engine.debug.DebugMap) HashMap(java.util.HashMap) Interval(org.opencds.cqf.cql.engine.runtime.Interval) Operation(ca.uhn.fhir.rest.annotation.Operation)

Example 10 with IdType

use of org.hl7.fhir.r5.model.IdType in project cqf-ruler by DBCG.

the class SubmitDataProviderIT method testSubmitData.

@Test
public void testSubmitData() {
    // Create a MR and a resource
    MeasureReport mr = newResource(MeasureReport.class, "test-mr");
    Observation obs = newResource(Observation.class, "test-obs");
    // Submit it
    mySubmitDataProvider.submitData(new SystemRequestDetails(), new IdType("Measure", "test-m"), mr, Lists.newArrayList(obs));
    // Check if they made it to the db
    Observation savedObs = read(obs.getIdElement());
    assertNotNull(savedObs);
    MeasureReport savedMr = read(mr.getIdElement());
    assertNotNull(savedMr);
}
Also used : SystemRequestDetails(ca.uhn.fhir.jpa.partition.SystemRequestDetails) Observation(org.hl7.fhir.r4.model.Observation) MeasureReport(org.hl7.fhir.r4.model.MeasureReport) IdType(org.hl7.fhir.r4.model.IdType) Test(org.junit.jupiter.api.Test) DaoIntegrationTest(org.opencds.cqf.ruler.test.DaoIntegrationTest) SpringBootTest(org.springframework.boot.test.context.SpringBootTest)

Aggregations

IdType (org.hl7.fhir.r4.model.IdType)240 Test (org.junit.Test)240 IdType (org.hl7.fhir.dstu3.model.IdType)217 BaseFhirProvenanceResourceTest (org.openmrs.module.fhir2.providers.BaseFhirProvenanceResourceTest)87 Test (org.junit.jupiter.api.Test)72 HashMap (java.util.HashMap)70 JsonObject (javax.json.JsonObject)55 Path (javax.ws.rs.Path)55 Produces (javax.ws.rs.Produces)55 IBaseResource (org.hl7.fhir.instance.model.api.IBaseResource)50 MethodOutcome (ca.uhn.fhir.rest.api.MethodOutcome)49 Bundle (org.hl7.fhir.r4.model.Bundle)45 Date (java.util.Date)44 GET (javax.ws.rs.GET)40 ArrayList (java.util.ArrayList)38 ResourceNotFoundException (ca.uhn.fhir.rest.server.exceptions.ResourceNotFoundException)36 Coding (org.hl7.fhir.r4.model.Coding)34 IBaseBundle (org.hl7.fhir.instance.model.api.IBaseBundle)33 Resource (org.hl7.fhir.r4.model.Resource)33 Provenance (org.hl7.fhir.r4.model.Provenance)32