Examples with ImplementationGuide org.hl7.fhir.r5.model.ImplementationGuide used on opensource projects

Example 56 with ImplementationGuide

use of org.hl7.fhir.r5.model.ImplementationGuide in project org.hl7.fhir.core by hapifhir.

the class BaseWorkerContext method registerResourceFromPackage.

public void registerResourceFromPackage(CanonicalResourceProxy r, PackageVersion packageInfo) throws FHIRException {
    synchronized (lock) {
        Map<String, ResourceProxy> map = allResourcesById.get(r.getType());
        if (map == null) {
            map = new HashMap<String, ResourceProxy>();
            allResourcesById.put(r.getType(), map);
        }
        if ((packageInfo == null || !packageInfo.isExamplesPackage()) || !map.containsKey(r.getId())) {
            map.put(r.getId(), new ResourceProxy(r));
        }
        String url = r.getUrl();
        if (!allowLoadingDuplicates && hasResource(r.getType(), url)) {
            // spcial workaround for known problems with existing packages
            if (Utilities.existsInList(url, "http://hl7.org/fhir/SearchParameter/example")) {
                return;
            }
            throw new DefinitionException(formatMessage(I18nConstants.DUPLICATE_RESOURCE_, url));
        }
        switch(r.getType()) {
            case "StructureDefinition":
                if ("1.4.0".equals(version)) {
                    StructureDefinition sd = (StructureDefinition) r.getResource();
                    fixOldSD(sd);
                }
                structures.register(r, packageInfo);
                break;
            case "ValueSet":
                valueSets.register(r, packageInfo);
                break;
            case "CodeSystem":
                codeSystems.register(r, packageInfo);
                break;
            case "ImplementationGuide":
                guides.register(r, packageInfo);
                break;
            case "CapabilityStatement":
                capstmts.register(r, packageInfo);
                break;
            case "Measure":
                measures.register(r, packageInfo);
                break;
            case "Library":
                libraries.register(r, packageInfo);
                break;
            case "SearchParameter":
                searchParameters.register(r, packageInfo);
                break;
            case "PlanDefinition":
                plans.register(r, packageInfo);
                break;
            case "OperationDefinition":
                operations.register(r, packageInfo);
                break;
            case "Questionnaire":
                questionnaires.register(r, packageInfo);
                break;
            case "ConceptMap":
                maps.register(r, packageInfo);
                break;
            case "StructureMap":
                transforms.register(r, packageInfo);
                break;
            case "NamingSystem":
                systems.register(r, packageInfo);
                break;
        }
    }
}

Example 57 with ImplementationGuide

use of org.hl7.fhir.r5.model.ImplementationGuide in project org.hl7.fhir.core by hapifhir.

the class RdfParser method composeImplementationGuideImplementationGuideGlobalComponent.

protected void composeImplementationGuideImplementationGuideGlobalComponent(Complex parent, String parentType, String name, ImplementationGuide.ImplementationGuideGlobalComponent element, int index) {
    if (element == null)
        return;
    Complex t;
    if (Utilities.noString(parentType))
        t = parent;
    else {
        t = parent.predicate("fhir:" + parentType + '.' + name);
    }
    composeBackboneElement(t, "global", name, element, index);
    if (element.hasTypeElement())
        composeCode(t, "ImplementationGuide", "type", element.getTypeElement(), -1);
    if (element.hasProfileElement())
        composeCanonical(t, "ImplementationGuide", "profile", element.getProfileElement(), -1);
}

Example 58 with ImplementationGuide

use of org.hl7.fhir.r5.model.ImplementationGuide in project org.hl7.fhir.core by hapifhir.

the class NPMPackageGenerator method buildPackageJson.

private void buildPackageJson(String canonical, PackageType kind, String web, Date date, ImplementationGuide ig, List<String> fhirVersion, boolean notForPublication) throws FHIRException, IOException {
    String dtHuman = new SimpleDateFormat("EEE, MMM d, yyyy HH:mmZ", new Locale("en", "US")).format(date);
    String dt = new SimpleDateFormat("yyyyMMddHHmmss").format(date);
    CommaSeparatedStringBuilder b = new CommaSeparatedStringBuilder();
    if (!ig.hasPackageId()) {
        b.append("packageId");
    }
    if (!ig.hasVersion()) {
        b.append("version");
    }
    if (!ig.hasFhirVersion()) {
        b.append("fhirVersion");
    }
    if (!ig.hasLicense()) {
        b.append("license");
    }
    for (ImplementationGuideDependsOnComponent d : ig.getDependsOn()) {
        if (!d.hasVersion()) {
            b.append("dependsOn.version(" + d.getUri() + ")");
        }
    }
    JsonObject npm = new JsonObject();
    npm.addProperty("name", ig.getPackageId());
    npm.addProperty("version", ig.getVersion());
    igVersion = ig.getVersion();
    npm.addProperty("tools-version", ToolsVersion.TOOLS_VERSION);
    npm.addProperty("type", kind.getCode());
    npm.addProperty("date", dt);
    if (ig.hasLicense()) {
        npm.addProperty("license", ig.getLicense().toCode());
    }
    npm.addProperty("canonical", canonical);
    if (notForPublication) {
        npm.addProperty("notForPublication", true);
    }
    npm.addProperty("url", web);
    if (ig.hasTitle()) {
        npm.addProperty("title", ig.getTitle());
    }
    if (ig.hasDescription()) {
        npm.addProperty("description", ig.getDescription() + " (built " + dtHuman + timezone() + ")");
    }
    JsonArray vl = new JsonArray();
    npm.add("fhirVersions", vl);
    for (String v : fhirVersion) {
        vl.add(new JsonPrimitive(v));
    }
    if (kind != PackageType.CORE) {
        JsonObject dep = new JsonObject();
        npm.add("dependencies", dep);
        for (String v : fhirVersion) {
            String vp = packageForVersion(v);
            if (vp != null) {
                dep.addProperty(vp, v);
            }
        }
        for (ImplementationGuideDependsOnComponent d : ig.getDependsOn()) {
            dep.addProperty(d.getPackageId(), d.getVersion());
        }
    }
    if (ig.hasPublisher()) {
        npm.addProperty("author", ig.getPublisher());
    }
    JsonArray m = new JsonArray();
    for (ContactDetail t : ig.getContact()) {
        String email = email(t.getTelecom());
        String url = url(t.getTelecom());
        if (t.hasName() & (email != null || url != null)) {
            JsonObject md = new JsonObject();
            m.add(md);
            md.addProperty("name", t.getName());
            if (email != null)
                md.addProperty("email", email);
            if (url != null)
                md.addProperty("url", url);
        }
    }
    if (m.size() > 0)
        npm.add("maintainers", m);
    if (ig.getManifest().hasRendering())
        npm.addProperty("homepage", ig.getManifest().getRendering());
    JsonObject dir = new JsonObject();
    npm.add("directories", dir);
    dir.addProperty("lib", "package");
    dir.addProperty("example", "example");
    Gson gson = new GsonBuilder().setPrettyPrinting().create();
    String json = gson.toJson(npm);
    try {
        addFile(Category.RESOURCE, "package.json", json.getBytes("UTF-8"));
    } catch (UnsupportedEncodingException e) {
    }
    packageJ = npm;
    packageManifest = new JsonObject();
    packageManifest.addProperty("version", ig.getVersion());
    packageManifest.addProperty("fhirVersion", fhirVersion.toString());
    packageManifest.addProperty("date", dt);
    packageManifest.addProperty("name", ig.getPackageId());
}

Example 59 with ImplementationGuide

use of org.hl7.fhir.r5.model.ImplementationGuide in project org.hl7.fhir.core by hapifhir.

the class RdfParser method composeImplementationGuide.

protected void composeImplementationGuide(Complex parent, String parentType, String name, ImplementationGuide element, int index) {
    if (element == null)
        return;
    Complex t;
    if (Utilities.noString(parentType))
        t = parent;
    else {
        t = parent.predicate("fhir:" + parentType + '.' + name);
    }
    composeDomainResource(t, "ImplementationGuide", name, element, index);
    if (element.hasUrlElement())
        composeUri(t, "ImplementationGuide", "url", element.getUrlElement(), -1);
    if (element.hasVersionElement())
        composeString(t, "ImplementationGuide", "version", element.getVersionElement(), -1);
    if (element.hasNameElement())
        composeString(t, "ImplementationGuide", "name", element.getNameElement(), -1);
    if (element.hasStatusElement())
        composeEnum(t, "ImplementationGuide", "status", element.getStatusElement(), -1);
    if (element.hasExperimentalElement())
        composeBoolean(t, "ImplementationGuide", "experimental", element.getExperimentalElement(), -1);
    if (element.hasPublisherElement())
        composeString(t, "ImplementationGuide", "publisher", element.getPublisherElement(), -1);
    for (int i = 0; i < element.getContact().size(); i++) composeImplementationGuideImplementationGuideContactComponent(t, "ImplementationGuide", "contact", element.getContact().get(i), i);
    if (element.hasDateElement())
        composeDateTime(t, "ImplementationGuide", "date", element.getDateElement(), -1);
    if (element.hasDescriptionElement())
        composeString(t, "ImplementationGuide", "description", element.getDescriptionElement(), -1);
    for (int i = 0; i < element.getUseContext().size(); i++) composeCodeableConcept(t, "ImplementationGuide", "useContext", element.getUseContext().get(i), i);
    if (element.hasCopyrightElement())
        composeString(t, "ImplementationGuide", "copyright", element.getCopyrightElement(), -1);
    if (element.hasFhirVersionElement())
        composeId(t, "ImplementationGuide", "fhirVersion", element.getFhirVersionElement(), -1);
    for (int i = 0; i < element.getDependency().size(); i++) composeImplementationGuideImplementationGuideDependencyComponent(t, "ImplementationGuide", "dependency", element.getDependency().get(i), i);
    for (int i = 0; i < element.getPackage().size(); i++) composeImplementationGuideImplementationGuidePackageComponent(t, "ImplementationGuide", "package", element.getPackage().get(i), i);
    for (int i = 0; i < element.getGlobal().size(); i++) composeImplementationGuideImplementationGuideGlobalComponent(t, "ImplementationGuide", "global", element.getGlobal().get(i), i);
    for (int i = 0; i < element.getBinary().size(); i++) composeUri(t, "ImplementationGuide", "binary", element.getBinary().get(i), i);
    if (element.hasPage())
        composeImplementationGuideImplementationGuidePageComponent(t, "ImplementationGuide", "page", element.getPage(), -1);
}

Example 60 with ImplementationGuide

use of org.hl7.fhir.r5.model.ImplementationGuide in project org.hl7.fhir.core by hapifhir.

the class FilesystemPackageCacheManager method fetchTheOldWay.

// ----- the old way, from before package server, while everything gets onto the package server
private InputStreamWithSrc fetchTheOldWay(String id, String v) {
    String url = getUrlForPackage(id);
    if (url == null) {
        try {
            url = getPackageUrlFromBuildList(id);
        } catch (Exception e) {
            url = null;
        }
    }
    if (url == null) {
        throw new FHIRException("Unable to resolve package id " + id + "#" + v);
    }
    if (url.contains("/ImplementationGuide/")) {
        url = url.substring(0, url.indexOf("/ImplementationGuide/"));
    }
    String pu = Utilities.pathURL(url, "package-list.json");
    String aurl = pu;
    JsonObject json;
    try {
        json = JsonTrackingParser.fetchJson(pu);
    } catch (Exception e) {
        String pv = Utilities.pathURL(url, v, "package.tgz");
        try {
            aurl = pv;
            InputStreamWithSrc src = new InputStreamWithSrc(fetchFromUrlSpecific(pv, false), pv, v);
            return src;
        } catch (Exception e1) {
            throw new FHIRException("Error fetching package directly (" + pv + "), or fetching package list for " + id + " from " + pu + ": " + e1.getMessage(), e1);
        }
    }
    if (!id.equals(JSONUtil.str(json, "package-id")))
        throw new FHIRException("Package ids do not match in " + pu + ": " + id + " vs " + JSONUtil.str(json, "package-id"));
    for (JsonElement e : json.getAsJsonArray("list")) {
        JsonObject vo = (JsonObject) e;
        if (v.equals(JSONUtil.str(vo, "version"))) {
            aurl = Utilities.pathURL(JSONUtil.str(vo, "path"), "package.tgz");
            String u = Utilities.pathURL(JSONUtil.str(vo, "path"), "package.tgz");
            return new InputStreamWithSrc(fetchFromUrlSpecific(u, true), u, v);
        }
    }
    return null;
}