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Example 41 with Patient

use of org.hl7.fhir.r5.model.Patient in project beneficiary-fhir-data by CMSgov.

the class ExplanationOfBenefitResourceProviderIT method searchForEobsByExistingPatientWithOddPaging.

/**
 * Verifies that {@link ExplanationOfBenefitResourceProvider#findByPatient} works as expected for
 * a {@link Patient} that does exist in the DB, with paging. This test uses a count of 3 to verify
 * our code will not run into an IndexOutOfBoundsException on even bundle sizes.
 *
 * @throws FHIRException (indicates test failure)
 */
@Test
public void searchForEobsByExistingPatientWithOddPaging() throws FHIRException {
    List<Object> loadedRecords = ServerTestUtils.get().loadData(Arrays.asList(StaticRifResourceGroup.SAMPLE_A.getResources()));
    IGenericClient fhirClient = ServerTestUtils.get().createFhirClient();
    Beneficiary beneficiary = loadedRecords.stream().filter(r -> r instanceof Beneficiary).map(r -> (Beneficiary) r).findFirst().get();
    Bundle searchResults = fhirClient.search().forResource(ExplanationOfBenefit.class).where(ExplanationOfBenefit.PATIENT.hasId(TransformerUtils.buildPatientId(beneficiary))).count(3).returnBundle(Bundle.class).execute();
    assertNotNull(searchResults);
    assertEquals(3, searchResults.getEntry().size());
    /*
     * Verify that accessing all next links, eventually leading to the last page,
     * will not encounter an IndexOutOfBoundsException.
     */
    while (searchResults.getLink(Constants.LINK_NEXT) != null) {
        searchResults = fhirClient.loadPage().next(searchResults).execute();
        assertNotNull(searchResults);
        assertTrue(searchResults.hasEntry());
    }
}
Also used : Arrays(java.util.Arrays) Bundle(org.hl7.fhir.dstu3.model.Bundle) Date(java.util.Date) Constants(ca.uhn.fhir.rest.api.Constants) InpatientClaim(gov.cms.bfd.model.rif.InpatientClaim) DateTimeDt(ca.uhn.fhir.model.primitive.DateTimeDt) PartDEvent(gov.cms.bfd.model.rif.PartDEvent) SNFClaim(gov.cms.bfd.model.rif.SNFClaim) DateRangeParam(ca.uhn.fhir.rest.param.DateRangeParam) BeforeAll(org.junit.jupiter.api.BeforeAll) IBaseResource(org.hl7.fhir.instance.model.api.IBaseResource) BeneficiaryHistory(gov.cms.bfd.model.rif.BeneficiaryHistory) IGenericClient(ca.uhn.fhir.rest.client.api.IGenericClient) Triple(org.apache.commons.lang3.tuple.Triple) OutpatientClaim(gov.cms.bfd.model.rif.OutpatientClaim) IdDt(ca.uhn.fhir.model.primitive.IdDt) ExplanationOfBenefit(org.hl7.fhir.dstu3.model.ExplanationOfBenefit) InvalidRequestException(ca.uhn.fhir.rest.server.exceptions.InvalidRequestException) Instant(java.time.Instant) Collectors(java.util.stream.Collectors) Test(org.junit.jupiter.api.Test) Beneficiary(gov.cms.bfd.model.rif.Beneficiary) List(java.util.List) TransformerConstants(gov.cms.bfd.server.war.commons.TransformerConstants) EntityManagerFactory(javax.persistence.EntityManagerFactory) Assertions.assertTrue(org.junit.jupiter.api.Assertions.assertTrue) CarrierClaim(gov.cms.bfd.model.rif.CarrierClaim) Optional(java.util.Optional) TokenAndListParam(ca.uhn.fhir.rest.param.TokenAndListParam) Assertions.assertThrows(org.junit.jupiter.api.Assertions.assertThrows) Assertions.assertNotNull(org.junit.jupiter.api.Assertions.assertNotNull) Assertions.assertNull(org.junit.jupiter.api.Assertions.assertNull) RequestHeaders(gov.cms.bfd.server.war.commons.RequestHeaders) IBaseBundle(org.hl7.fhir.instance.model.api.IBaseBundle) ArrayList(java.util.ArrayList) HHAClaim(gov.cms.bfd.model.rif.HHAClaim) PipelineTestUtils(gov.cms.bfd.pipeline.sharedutils.PipelineTestUtils) RequestDetails(ca.uhn.fhir.rest.api.server.RequestDetails) ImmutableList(com.google.common.collect.ImmutableList) ReferenceParam(ca.uhn.fhir.rest.param.ReferenceParam) DMEClaim(gov.cms.bfd.model.rif.DMEClaim) Assertions.assertEquals(org.junit.jupiter.api.Assertions.assertEquals) ResourceNotFoundException(ca.uhn.fhir.rest.server.exceptions.ResourceNotFoundException) StaticRifResourceGroup(gov.cms.bfd.model.rif.samples.StaticRifResourceGroup) ServerTestUtils(gov.cms.bfd.server.war.ServerTestUtils) StringClientParam(ca.uhn.fhir.rest.gclient.StringClientParam) CommonHeaders(gov.cms.bfd.server.war.commons.CommonHeaders) ImmutableTriple(org.apache.commons.lang3.tuple.ImmutableTriple) TokenClientParam(ca.uhn.fhir.rest.gclient.TokenClientParam) HospiceClaim(gov.cms.bfd.model.rif.HospiceClaim) EntityManager(javax.persistence.EntityManager) MedicareBeneficiaryIdHistory(gov.cms.bfd.model.rif.MedicareBeneficiaryIdHistory) AfterEach(org.junit.jupiter.api.AfterEach) ChronoUnit(java.time.temporal.ChronoUnit) Patient(org.hl7.fhir.dstu3.model.Patient) FHIRException(org.hl7.fhir.exceptions.FHIRException) IGenericClient(ca.uhn.fhir.rest.client.api.IGenericClient) Bundle(org.hl7.fhir.dstu3.model.Bundle) IBaseBundle(org.hl7.fhir.instance.model.api.IBaseBundle) Beneficiary(gov.cms.bfd.model.rif.Beneficiary) Test(org.junit.jupiter.api.Test)

Example 42 with Patient

use of org.hl7.fhir.r5.model.Patient in project beneficiary-fhir-data by CMSgov.

the class ExplanationOfBenefitResourceProviderIT method searchForEobsByExistingPatientWithPageSizeNotProvided.

/**
 * Verifies that {@link ExplanationOfBenefitResourceProvider#findByPatient} works as expected for
 * a {@link Patient} that does exist in the DB, with paging, providing the startIndex but not the
 * pageSize (count).
 *
 * @throws FHIRException (indicates test failure)
 */
@Test
public void searchForEobsByExistingPatientWithPageSizeNotProvided() throws FHIRException {
    List<Object> loadedRecords = ServerTestUtils.get().loadData(Arrays.asList(StaticRifResourceGroup.SAMPLE_A.getResources()));
    IGenericClient fhirClient = ServerTestUtils.get().createFhirClient();
    Beneficiary beneficiary = loadedRecords.stream().filter(r -> r instanceof Beneficiary).map(r -> (Beneficiary) r).findFirst().get();
    Bundle searchResults = fhirClient.search().forResource(ExplanationOfBenefit.class).where(ExplanationOfBenefit.PATIENT.hasId(TransformerUtils.buildPatientId(beneficiary))).returnBundle(Bundle.class).execute();
    assertNotNull(searchResults);
    /*
     * Verify that no paging links exist in the bundle.
     */
    assertNull(searchResults.getLink(Constants.LINK_NEXT));
    assertNull(searchResults.getLink(Constants.LINK_PREVIOUS));
    assertNull(searchResults.getLink(Constants.LINK_FIRST));
    assertNull(searchResults.getLink(Constants.LINK_LAST));
    /*
     * Access a created link of this bundle, providing the startIndex but not the
     * pageSize (count).
     */
    Bundle pagedResults = fhirClient.loadPage().byUrl(searchResults.getLink(Bundle.LINK_SELF).getUrl() + "&startIndex=4").andReturnBundle(Bundle.class).execute();
    assertNotNull(pagedResults);
    /*
     * Verify that paging links exist in this paged bundle.
     */
    assertNull(pagedResults.getLink(Constants.LINK_NEXT));
    assertNotNull(pagedResults.getLink(Constants.LINK_PREVIOUS));
    assertNotNull(pagedResults.getLink(Constants.LINK_FIRST));
    assertNotNull(pagedResults.getLink(Constants.LINK_LAST));
    /*
     * Add the entries in the paged results to a list and verify that only the last
     * 4 entries in the original searchResults were returned in the pagedResults.
     */
    List<IBaseResource> pagedEntries = new ArrayList<>();
    pagedResults.getEntry().forEach(e -> pagedEntries.add(e.getResource()));
    assertEquals(4, pagedEntries.size());
}
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Example 43 with Patient

use of org.hl7.fhir.r5.model.Patient in project beneficiary-fhir-data by CMSgov.

the class R4PatientResourceProviderIT method searchForExistingPatientByPartDContractNumIncludeIdentifiersFalse.

@Test
public void searchForExistingPatientByPartDContractNumIncludeIdentifiersFalse() {
    List<Object> loadedRecords = ServerTestUtils.get().loadData(Arrays.asList(StaticRifResource.SAMPLE_A_BENES));
    IGenericClient fhirClient = createFhirClient("mbi, false", "true");
    // Should return a single match
    Bundle searchResults = fhirClient.search().forResource(Patient.class).where(new TokenClientParam("_has:Coverage.extension").exactly().systemAndIdentifier(CCWUtils.calculateVariableReferenceUrl(CcwCodebookVariable.PTDCNTRCT01), "S4607")).where(new TokenClientParam("_has:Coverage.rfrncyr").exactly().systemAndIdentifier(CCWUtils.calculateVariableReferenceUrl(CcwCodebookVariable.RFRNC_YR), "2018")).returnBundle(Bundle.class).execute();
    assertNotNull(searchResults);
    assertEquals(1, searchResults.getEntry().size());
    Patient patientFromSearchResult = (Patient) searchResults.getEntry().get(0).getResource();
    Beneficiary expectedBene = (Beneficiary) loadedRecords.get(0);
    assertEquals(expectedBene.getBeneficiaryId(), patientFromSearchResult.getIdElement().getIdPart());
    /*
     * Ensure the unhashed values for MBI is present.
     */
    Boolean mbiUnhashedPresent = false;
    Iterator<Identifier> identifiers = patientFromSearchResult.getIdentifier().iterator();
    while (identifiers.hasNext()) {
        Identifier identifier = identifiers.next();
        if (identifier.getSystem().equals(TransformerConstants.CODING_BBAPI_MEDICARE_BENEFICIARY_ID_UNHASHED)) {
            mbiUnhashedPresent = true;
        }
    }
    assertTrue(mbiUnhashedPresent);
}
Also used : Identifier(org.hl7.fhir.r4.model.Identifier) TokenClientParam(ca.uhn.fhir.rest.gclient.TokenClientParam) IGenericClient(ca.uhn.fhir.rest.client.api.IGenericClient) Bundle(org.hl7.fhir.r4.model.Bundle) Patient(org.hl7.fhir.r4.model.Patient) Beneficiary(gov.cms.bfd.model.rif.Beneficiary) Test(org.junit.jupiter.api.Test)

Example 44 with Patient

use of org.hl7.fhir.r5.model.Patient in project beneficiary-fhir-data by CMSgov.

the class R4PatientResourceProviderIT method searchForExistingPatientByHistoricalMbiHash.

/**
 * Verifies that {@link
 * gov.cms.bfd.server.war.r4.providers.R4PatientResourceProvider#searchByIdentifier(ca.uhn.fhir.rest.param.TokenParam)}
 * works as expected for MBIs that should be present as a {@link BeneficiaryHistory} record.
 */
@Test
public void searchForExistingPatientByHistoricalMbiHash() {
    List<Object> loadedRecords = ServerTestUtils.get().loadData(Arrays.asList(StaticRifResourceGroup.SAMPLE_A.getResources()));
    IGenericClient fhirClient = ServerTestUtils.get().createFhirClientV2();
    loadedRecords.stream().filter(r -> r instanceof BeneficiaryHistory).map(r -> (BeneficiaryHistory) r).forEach(h -> {
        Bundle searchResults = fhirClient.search().forResource(Patient.class).where(Patient.IDENTIFIER.exactly().systemAndIdentifier(TransformerConstants.CODING_BBAPI_BENE_MBI_HASH, h.getMbiHash().get())).returnBundle(Bundle.class).execute();
        assertNotNull(searchResults);
        assertEquals(1, searchResults.getTotal());
        Patient patientFromSearchResult = (Patient) searchResults.getEntry().get(0).getResource();
        assertEquals(h.getBeneficiaryId(), patientFromSearchResult.getIdElement().getIdPart());
    });
}
Also used : BeneficiaryHistory(gov.cms.bfd.model.rif.BeneficiaryHistory) Assertions.assertThrows(org.junit.jupiter.api.Assertions.assertThrows) Assertions.fail(org.junit.jupiter.api.Assertions.fail) Assertions.assertNotNull(org.junit.jupiter.api.Assertions.assertNotNull) Arrays(java.util.Arrays) StaticRifResource(gov.cms.bfd.model.rif.samples.StaticRifResource) Date(java.util.Date) ExtraParamsInterceptor(gov.cms.bfd.server.war.stu3.providers.ExtraParamsInterceptor) Assertions.assertNull(org.junit.jupiter.api.Assertions.assertNull) Constants(ca.uhn.fhir.rest.api.Constants) Identifier(org.hl7.fhir.r4.model.Identifier) DateTimeDt(ca.uhn.fhir.model.primitive.DateTimeDt) RequestHeaders(gov.cms.bfd.server.war.commons.RequestHeaders) CCWUtils(gov.cms.bfd.server.war.commons.CCWUtils) PipelineTestUtils(gov.cms.bfd.pipeline.sharedutils.PipelineTestUtils) BeforeAll(org.junit.jupiter.api.BeforeAll) CcwCodebookVariable(gov.cms.bfd.model.codebook.data.CcwCodebookVariable) BeneficiaryHistory(gov.cms.bfd.model.rif.BeneficiaryHistory) Assertions.assertEquals(org.junit.jupiter.api.Assertions.assertEquals) IGenericClient(ca.uhn.fhir.rest.client.api.IGenericClient) ResourceNotFoundException(ca.uhn.fhir.rest.server.exceptions.ResourceNotFoundException) StaticRifResourceGroup(gov.cms.bfd.model.rif.samples.StaticRifResourceGroup) ServerTestUtils(gov.cms.bfd.server.war.ServerTestUtils) Patient(org.hl7.fhir.r4.model.Patient) Iterator(java.util.Iterator) TokenClientParam(ca.uhn.fhir.rest.gclient.TokenClientParam) InvalidRequestException(ca.uhn.fhir.rest.server.exceptions.InvalidRequestException) MedicareBeneficiaryIdHistory(gov.cms.bfd.model.rif.MedicareBeneficiaryIdHistory) Instant(java.time.Instant) Collectors(java.util.stream.Collectors) Test(org.junit.jupiter.api.Test) Beneficiary(gov.cms.bfd.model.rif.Beneficiary) List(java.util.List) AfterEach(org.junit.jupiter.api.AfterEach) TransformerConstants(gov.cms.bfd.server.war.commons.TransformerConstants) Stream(java.util.stream.Stream) Assertions.assertTrue(org.junit.jupiter.api.Assertions.assertTrue) Bundle(org.hl7.fhir.r4.model.Bundle) IGenericClient(ca.uhn.fhir.rest.client.api.IGenericClient) Bundle(org.hl7.fhir.r4.model.Bundle) Patient(org.hl7.fhir.r4.model.Patient) Test(org.junit.jupiter.api.Test)

Example 45 with Patient

use of org.hl7.fhir.r5.model.Patient in project beneficiary-fhir-data by CMSgov.

the class R4PatientResourceProviderIT method assertExistingPatientIncludeIdentifiersExpected.

/**
 * Asserts that {@link
 * gov.cms.bfd.server.war.r4.providers.R4PatientResourceProvider#read(org.hl7.fhir.r4.model.IdType)}
 * contains expected/present identifiers for a {@link Patient}.
 *
 * @param includeIdentifiersValue header value
 * @param expectingMbi true if expecting a MBI
 * @param includeAddressValues header value
 */
public void assertExistingPatientIncludeIdentifiersExpected(boolean expectingMbi, RequestHeaders requestHeader) {
    List<Object> loadedRecords = ServerTestUtils.get().loadData(Arrays.asList(StaticRifResourceGroup.SAMPLE_A.getResources()));
    Beneficiary beneficiary = loadedRecords.stream().filter(r -> r instanceof Beneficiary).map(r -> (Beneficiary) r).findFirst().get();
    Patient expected = BeneficiaryTransformerV2.transform(PipelineTestUtils.get().getPipelineApplicationState().getMetrics(), beneficiary, requestHeader);
    IGenericClient fhirClient = createFhirClient(requestHeader);
    Patient patient = fhirClient.read().resource(Patient.class).withId(beneficiary.getBeneficiaryId()).execute();
    // Because of how transform doesn't go through R4PatientResourceProvider, `expected` won't have
    // the historical MBI data.
    // Also, SAMPLE_A does not have mbi history (it used to); however, what used to be denoted as
    // historical
    // is not provided as the 'current' MBI identifier (no historical).
    comparePatient(expected, patient);
    /*
     * Ensure the unhashed values for MBI are present.
     */
    Boolean mbiUnhashedPresent = false;
    Iterator<Identifier> identifiers = patient.getIdentifier().iterator();
    while (identifiers.hasNext()) {
        Identifier identifier = identifiers.next();
        if (identifier.getSystem().equals(TransformerConstants.CODING_BBAPI_BENE_ID)) {
            mbiUnhashedPresent = true;
        }
    }
    // Unhashed MBI should always be present in V2
    assertTrue(mbiUnhashedPresent);
}
Also used : Assertions.assertThrows(org.junit.jupiter.api.Assertions.assertThrows) Assertions.fail(org.junit.jupiter.api.Assertions.fail) Assertions.assertNotNull(org.junit.jupiter.api.Assertions.assertNotNull) Arrays(java.util.Arrays) StaticRifResource(gov.cms.bfd.model.rif.samples.StaticRifResource) Date(java.util.Date) ExtraParamsInterceptor(gov.cms.bfd.server.war.stu3.providers.ExtraParamsInterceptor) Assertions.assertNull(org.junit.jupiter.api.Assertions.assertNull) Constants(ca.uhn.fhir.rest.api.Constants) Identifier(org.hl7.fhir.r4.model.Identifier) DateTimeDt(ca.uhn.fhir.model.primitive.DateTimeDt) RequestHeaders(gov.cms.bfd.server.war.commons.RequestHeaders) CCWUtils(gov.cms.bfd.server.war.commons.CCWUtils) PipelineTestUtils(gov.cms.bfd.pipeline.sharedutils.PipelineTestUtils) BeforeAll(org.junit.jupiter.api.BeforeAll) CcwCodebookVariable(gov.cms.bfd.model.codebook.data.CcwCodebookVariable) BeneficiaryHistory(gov.cms.bfd.model.rif.BeneficiaryHistory) Assertions.assertEquals(org.junit.jupiter.api.Assertions.assertEquals) IGenericClient(ca.uhn.fhir.rest.client.api.IGenericClient) ResourceNotFoundException(ca.uhn.fhir.rest.server.exceptions.ResourceNotFoundException) StaticRifResourceGroup(gov.cms.bfd.model.rif.samples.StaticRifResourceGroup) ServerTestUtils(gov.cms.bfd.server.war.ServerTestUtils) Patient(org.hl7.fhir.r4.model.Patient) Iterator(java.util.Iterator) TokenClientParam(ca.uhn.fhir.rest.gclient.TokenClientParam) InvalidRequestException(ca.uhn.fhir.rest.server.exceptions.InvalidRequestException) MedicareBeneficiaryIdHistory(gov.cms.bfd.model.rif.MedicareBeneficiaryIdHistory) Instant(java.time.Instant) Collectors(java.util.stream.Collectors) Test(org.junit.jupiter.api.Test) Beneficiary(gov.cms.bfd.model.rif.Beneficiary) List(java.util.List) AfterEach(org.junit.jupiter.api.AfterEach) TransformerConstants(gov.cms.bfd.server.war.commons.TransformerConstants) Stream(java.util.stream.Stream) Assertions.assertTrue(org.junit.jupiter.api.Assertions.assertTrue) Bundle(org.hl7.fhir.r4.model.Bundle) Identifier(org.hl7.fhir.r4.model.Identifier) IGenericClient(ca.uhn.fhir.rest.client.api.IGenericClient) Patient(org.hl7.fhir.r4.model.Patient) Beneficiary(gov.cms.bfd.model.rif.Beneficiary)

Aggregations

Test (org.junit.Test)576 Test (org.junit.jupiter.api.Test)442 Patient (org.hl7.fhir.r4.model.Patient)437 IBaseResource (org.hl7.fhir.instance.model.api.IBaseResource)255 HashMap (java.util.HashMap)251 Patient (org.hl7.fhir.dstu3.model.Patient)249 IBundleProvider (ca.uhn.fhir.rest.api.server.IBundleProvider)228 Bundle (org.hl7.fhir.r4.model.Bundle)203 Path (javax.ws.rs.Path)188 Date (java.util.Date)171 Produces (javax.ws.rs.Produces)163 ArrayList (java.util.ArrayList)156 JsonObject (javax.json.JsonObject)141 SearchParameterMap (org.openmrs.module.fhir2.api.search.param.SearchParameterMap)140 MockHttpServletResponse (org.springframework.mock.web.MockHttpServletResponse)138 ReferenceParam (ca.uhn.fhir.rest.param.ReferenceParam)137 ReferenceAndListParam (ca.uhn.fhir.rest.param.ReferenceAndListParam)128 ReferenceOrListParam (ca.uhn.fhir.rest.param.ReferenceOrListParam)128 BaseModuleContextSensitiveTest (org.openmrs.test.BaseModuleContextSensitiveTest)125 SpringBootTest (org.springframework.boot.test.context.SpringBootTest)120