Examples with SampledData org.hl7.fhir.r5.model.SampledData used on opensource projects

Example 16 with SampledData

use of org.hl7.fhir.r5.model.SampledData in project synthea by synthetichealth.

the class ExportHelper method getObservationValue.

/**
 * Helper to get a readable string representation of an Observation's value.
 * Units are not included.
 *
 * @param observation The observation to get the value from
 * @return A human-readable string representation of observation.value
 */
public static String getObservationValue(Observation observation) {
    String value = null;
    if (observation.value instanceof Condition) {
        Code conditionCode = ((HealthRecord.Entry) observation.value).codes.get(0);
        value = conditionCode.display;
    } else if (observation.value instanceof Code) {
        value = ((Code) observation.value).display;
    } else if (observation.value instanceof String) {
        value = (String) observation.value;
    } else if (observation.value instanceof Double) {
        // round to 1 decimal place for display
        value = String.format(Locale.US, "%.1f", observation.value);
    } else if (observation.value instanceof SampledData) {
        value = sampledDataToValueString((SampledData) observation.value);
    } else if (observation.value instanceof Attachment) {
        value = attachmentToValueString((Attachment) observation.value);
    } else if (observation.value != null) {
        value = observation.value.toString();
    }
    return value;
}

Example 17 with SampledData

use of org.hl7.fhir.r5.model.SampledData in project org.hl7.fhir.core by hapifhir.

the class NarrativeGenerator method displayLeaf.

private boolean displayLeaf(ResourceWrapper res, BaseWrapper ew, ElementDefinition defn, XhtmlNode x, String name, boolean showCodeDetails) throws FHIRException, UnsupportedEncodingException, IOException {
    if (ew == null)
        return false;
    Base e = ew.getBase();
    Map<String, String> displayHints = readDisplayHints(defn);
    if (name.endsWith("[x]"))
        name = name.substring(0, name.length() - 3);
    if (!showCodeDetails && e instanceof PrimitiveType && isDefault(displayHints, ((PrimitiveType) e)))
        return false;
    if (e instanceof StringType) {
        x.addText(name + ": " + ((StringType) e).getValue());
        return true;
    } else if (e instanceof CodeType) {
        x.addText(name + ": " + ((CodeType) e).getValue());
        return true;
    } else if (e instanceof IdType) {
        x.addText(name + ": " + ((IdType) e).getValue());
        return true;
    } else if (e instanceof DateTimeType) {
        x.addText(name + ": " + ((DateTimeType) e).toHumanDisplay());
        return true;
    } else if (e instanceof InstantType) {
        x.addText(name + ": " + ((InstantType) e).toHumanDisplay());
        return true;
    } else if (e instanceof Extension) {
        x.addText("Extensions: todo");
        return true;
    } else if (e instanceof org.hl7.fhir.dstu2.model.DateType) {
        x.addText(name + ": " + ((org.hl7.fhir.dstu2.model.DateType) e).toHumanDisplay());
        return true;
    } else if (e instanceof Enumeration) {
        // todo: look up a display name if there is one
        x.addText(((Enumeration<?>) e).getValue().toString());
        return true;
    } else if (e instanceof BooleanType) {
        if (((BooleanType) e).getValue()) {
            x.addText(name);
            return true;
        }
    } else if (e instanceof CodeableConcept) {
        renderCodeableConcept((CodeableConcept) e, x, showCodeDetails);
        return true;
    } else if (e instanceof Coding) {
        renderCoding((Coding) e, x, showCodeDetails);
        return true;
    } else if (e instanceof Annotation) {
        renderAnnotation((Annotation) e, x, showCodeDetails);
        return true;
    } else if (e instanceof org.hl7.fhir.dstu2.model.IntegerType) {
        x.addText(Integer.toString(((org.hl7.fhir.dstu2.model.IntegerType) e).getValue()));
        return true;
    } else if (e instanceof org.hl7.fhir.dstu2.model.DecimalType) {
        x.addText(((org.hl7.fhir.dstu2.model.DecimalType) e).getValue().toString());
        return true;
    } else if (e instanceof Identifier) {
        renderIdentifier((Identifier) e, x);
        return true;
    } else if (e instanceof HumanName) {
        renderHumanName((HumanName) e, x);
        return true;
    } else if (e instanceof SampledData) {
        renderSampledData((SampledData) e, x);
        return true;
    } else if (e instanceof Address) {
        renderAddress((Address) e, x);
        return true;
    } else if (e instanceof ContactPoint) {
        renderContactPoint((ContactPoint) e, x);
        return true;
    } else if (e instanceof Timing) {
        renderTiming((Timing) e, x);
        return true;
    } else if (e instanceof Quantity) {
        renderQuantity((Quantity) e, x, showCodeDetails);
        return true;
    } else if (e instanceof Ratio) {
        renderQuantity(((Ratio) e).getNumerator(), x, showCodeDetails);
        x.addText("/");
        renderQuantity(((Ratio) e).getDenominator(), x, showCodeDetails);
        return true;
    } else if (e instanceof Period) {
        Period p = (Period) e;
        x.addText(name + ": ");
        x.addText(!p.hasStart() ? "??" : p.getStartElement().toHumanDisplay());
        x.addText(" --> ");
        x.addText(!p.hasEnd() ? "(ongoing)" : p.getEndElement().toHumanDisplay());
        return true;
    } else if (e instanceof Reference) {
        Reference r = (Reference) e;
        if (r.hasDisplayElement())
            x.addText(r.getDisplay());
        else if (r.hasReferenceElement()) {
            ResourceWithReference tr = resolveReference(res, r.getReference());
            // getDisplayForReference(tr.getReference()));
            x.addText(tr == null ? r.getReference() : "????");
        } else
            x.addText("??");
        return true;
    } else if (e instanceof Narrative) {
        return false;
    } else if (e instanceof Resource) {
        return false;
    } else if (!(e instanceof Attachment))
        throw new NotImplementedException("type " + e.getClass().getName() + " not handled yet");
    return false;
}

Example 18 with SampledData

use of org.hl7.fhir.r5.model.SampledData in project org.hl7.fhir.core by hapifhir.

the class RdfParser method composeSampledData.

protected void composeSampledData(Complex parent, String parentType, String name, SampledData element, int index) {
    if (element == null)
        return;
    Complex t;
    if (Utilities.noString(parentType))
        t = parent;
    else {
        t = parent.predicate("fhir:" + parentType + '.' + name);
    }
    composeElement(t, "SampledData", name, element, index);
    if (element.hasOrigin())
        composeQuantity(t, "SampledData", "origin", element.getOrigin(), -1);
    if (element.hasPeriodElement())
        composeDecimal(t, "SampledData", "period", element.getPeriodElement(), -1);
    if (element.hasFactorElement())
        composeDecimal(t, "SampledData", "factor", element.getFactorElement(), -1);
    if (element.hasLowerLimitElement())
        composeDecimal(t, "SampledData", "lowerLimit", element.getLowerLimitElement(), -1);
    if (element.hasUpperLimitElement())
        composeDecimal(t, "SampledData", "upperLimit", element.getUpperLimitElement(), -1);
    if (element.hasDimensionsElement())
        composePositiveInt(t, "SampledData", "dimensions", element.getDimensionsElement(), -1);
    if (element.hasDataElement())
        composeString(t, "SampledData", "data", element.getDataElement(), -1);
}

Example 19 with SampledData

use of org.hl7.fhir.r5.model.SampledData in project org.hl7.fhir.core by hapifhir.

the class NarrativeGenerator method renderLeaf.

private void renderLeaf(ResourceWrapper res, BaseWrapper ew, ElementDefinition defn, XhtmlNode x, boolean title, boolean showCodeDetails, Map<String, String> displayHints, String path, int indent, ResourceContext rc) throws FHIRException, UnsupportedEncodingException, IOException {
    if (ew == null)
        return;
    Base e = ew.getBase();
    if (e instanceof StringType)
        x.addText(((StringType) e).getValue());
    else if (e instanceof CodeType)
        x.addText(((CodeType) e).getValue());
    else if (e instanceof IdType)
        x.addText(((IdType) e).getValue());
    else if (e instanceof Extension)
        return;
    else if (e instanceof InstantType)
        x.addText(((InstantType) e).toHumanDisplay());
    else if (e instanceof DateTimeType) {
        if (e.hasPrimitiveValue())
            x.addText(((DateTimeType) e).toHumanDisplay());
    } else if (e instanceof Base64BinaryType)
        x.addText(new Base64().encodeAsString(((Base64BinaryType) e).getValue()));
    else if (e instanceof org.hl7.fhir.r4.model.DateType)
        x.addText(((org.hl7.fhir.r4.model.DateType) e).toHumanDisplay());
    else if (e instanceof Enumeration) {
        Object ev = ((Enumeration<?>) e).getValue();
        // todo: look up a display name if there is one
        x.addText(ev == null ? "" : ev.toString());
    } else if (e instanceof BooleanType)
        x.addText(((BooleanType) e).getValue().toString());
    else if (e instanceof CodeableConcept) {
        renderCodeableConcept((CodeableConcept) e, x, showCodeDetails);
    } else if (e instanceof Coding) {
        renderCoding((Coding) e, x, showCodeDetails);
    } else if (e instanceof Annotation) {
        renderAnnotation((Annotation) e, x);
    } else if (e instanceof Identifier) {
        renderIdentifier((Identifier) e, x);
    } else if (e instanceof org.hl7.fhir.r4.model.IntegerType) {
        x.addText(Integer.toString(((org.hl7.fhir.r4.model.IntegerType) e).getValue()));
    } else if (e instanceof org.hl7.fhir.r4.model.DecimalType) {
        x.addText(((org.hl7.fhir.r4.model.DecimalType) e).getValue().toString());
    } else if (e instanceof HumanName) {
        renderHumanName((HumanName) e, x);
    } else if (e instanceof SampledData) {
        renderSampledData((SampledData) e, x);
    } else if (e instanceof Address) {
        renderAddress((Address) e, x);
    } else if (e instanceof ContactPoint) {
        renderContactPoint((ContactPoint) e, x);
    } else if (e instanceof UriType) {
        renderUri((UriType) e, x, defn.getPath(), rc != null && rc.resourceResource != null ? rc.resourceResource.getId() : null);
    } else if (e instanceof Timing) {
        renderTiming((Timing) e, x);
    } else if (e instanceof Range) {
        renderRange((Range) e, x);
    } else if (e instanceof Quantity) {
        renderQuantity((Quantity) e, x, showCodeDetails);
    } else if (e instanceof Ratio) {
        renderQuantity(((Ratio) e).getNumerator(), x, showCodeDetails);
        x.tx("/");
        renderQuantity(((Ratio) e).getDenominator(), x, showCodeDetails);
    } else if (e instanceof Period) {
        Period p = (Period) e;
        x.addText(!p.hasStart() ? "??" : p.getStartElement().toHumanDisplay());
        x.tx(" --> ");
        x.addText(!p.hasEnd() ? "(ongoing)" : p.getEndElement().toHumanDisplay());
    } else if (e instanceof Reference) {
        Reference r = (Reference) e;
        XhtmlNode c = x;
        ResourceWithReference tr = null;
        if (r.hasReferenceElement()) {
            tr = resolveReference(res, r.getReference(), rc);
            if (!r.getReference().startsWith("#")) {
                if (tr != null && tr.getReference() != null)
                    c = x.ah(tr.getReference());
                else
                    c = x.ah(r.getReference());
            }
        }
        // what to display: if text is provided, then that. if the reference was resolved, then show the generated narrative
        if (r.hasDisplayElement()) {
            c.addText(r.getDisplay());
            if (tr != null && tr.getResource() != null) {
                c.tx(". Generated Summary: ");
                generateResourceSummary(c, tr.getResource(), true, r.getReference().startsWith("#"), rc);
            }
        } else if (tr != null && tr.getResource() != null) {
            generateResourceSummary(c, tr.getResource(), r.getReference().startsWith("#"), r.getReference().startsWith("#"), rc);
        } else {
            c.addText(r.getReference());
        }
    } else if (e instanceof Resource) {
        return;
    } else if (e instanceof ElementDefinition) {
        x.tx("todo-bundle");
    } else if (e != null && !(e instanceof Attachment) && !(e instanceof Narrative) && !(e instanceof Meta)) {
        StructureDefinition sd = context.fetchTypeDefinition(e.fhirType());
        if (sd == null)
            throw new NotImplementedException("type " + e.getClass().getName() + " not handled yet, and no structure found");
        else
            generateByProfile(res, sd, ew, sd.getSnapshot().getElement(), sd.getSnapshot().getElementFirstRep(), getChildrenForPath(sd.getSnapshot().getElement(), sd.getSnapshot().getElementFirstRep().getPath()), x, path, showCodeDetails, indent + 1, rc);
    }
}

Example 20 with SampledData

use of org.hl7.fhir.r5.model.SampledData in project org.hl7.fhir.core by hapifhir.

the class JsonParser method composeType.

protected void composeType(String prefix, DataType type) throws IOException {
    if (type == null) {
        ;
    } else if (type instanceof Address) {
        composeAddress(prefix + "Address", (Address) type);
    } else if (type instanceof Age) {
        composeAge(prefix + "Age", (Age) type);
    } else if (type instanceof Annotation) {
        composeAnnotation(prefix + "Annotation", (Annotation) type);
    } else if (type instanceof Attachment) {
        composeAttachment(prefix + "Attachment", (Attachment) type);
    } else if (type instanceof CodeableConcept) {
        composeCodeableConcept(prefix + "CodeableConcept", (CodeableConcept) type);
    } else if (type instanceof CodeableReference) {
        composeCodeableReference(prefix + "CodeableReference", (CodeableReference) type);
    } else if (type instanceof Coding) {
        composeCoding(prefix + "Coding", (Coding) type);
    } else if (type instanceof ContactDetail) {
        composeContactDetail(prefix + "ContactDetail", (ContactDetail) type);
    } else if (type instanceof ContactPoint) {
        composeContactPoint(prefix + "ContactPoint", (ContactPoint) type);
    } else if (type instanceof Contributor) {
        composeContributor(prefix + "Contributor", (Contributor) type);
    } else if (type instanceof Count) {
        composeCount(prefix + "Count", (Count) type);
    } else if (type instanceof DataRequirement) {
        composeDataRequirement(prefix + "DataRequirement", (DataRequirement) type);
    } else if (type instanceof Distance) {
        composeDistance(prefix + "Distance", (Distance) type);
    } else if (type instanceof Dosage) {
        composeDosage(prefix + "Dosage", (Dosage) type);
    } else if (type instanceof Duration) {
        composeDuration(prefix + "Duration", (Duration) type);
    } else if (type instanceof ElementDefinition) {
        composeElementDefinition(prefix + "ElementDefinition", (ElementDefinition) type);
    } else if (type instanceof Expression) {
        composeExpression(prefix + "Expression", (Expression) type);
    } else if (type instanceof Extension) {
        composeExtension(prefix + "Extension", (Extension) type);
    } else if (type instanceof HumanName) {
        composeHumanName(prefix + "HumanName", (HumanName) type);
    } else if (type instanceof Identifier) {
        composeIdentifier(prefix + "Identifier", (Identifier) type);
    } else if (type instanceof MarketingStatus) {
        composeMarketingStatus(prefix + "MarketingStatus", (MarketingStatus) type);
    } else if (type instanceof Meta) {
        composeMeta(prefix + "Meta", (Meta) type);
    } else if (type instanceof Money) {
        composeMoney(prefix + "Money", (Money) type);
    } else if (type instanceof Narrative) {
        composeNarrative(prefix + "Narrative", (Narrative) type);
    } else if (type instanceof ParameterDefinition) {
        composeParameterDefinition(prefix + "ParameterDefinition", (ParameterDefinition) type);
    } else if (type instanceof Period) {
        composePeriod(prefix + "Period", (Period) type);
    } else if (type instanceof Population) {
        composePopulation(prefix + "Population", (Population) type);
    } else if (type instanceof ProdCharacteristic) {
        composeProdCharacteristic(prefix + "ProdCharacteristic", (ProdCharacteristic) type);
    } else if (type instanceof ProductShelfLife) {
        composeProductShelfLife(prefix + "ProductShelfLife", (ProductShelfLife) type);
    } else if (type instanceof Quantity) {
        composeQuantity(prefix + "Quantity", (Quantity) type);
    } else if (type instanceof Range) {
        composeRange(prefix + "Range", (Range) type);
    } else if (type instanceof Ratio) {
        composeRatio(prefix + "Ratio", (Ratio) type);
    } else if (type instanceof RatioRange) {
        composeRatioRange(prefix + "RatioRange", (RatioRange) type);
    } else if (type instanceof Reference) {
        composeReference(prefix + "Reference", (Reference) type);
    } else if (type instanceof RelatedArtifact) {
        composeRelatedArtifact(prefix + "RelatedArtifact", (RelatedArtifact) type);
    } else if (type instanceof SampledData) {
        composeSampledData(prefix + "SampledData", (SampledData) type);
    } else if (type instanceof Signature) {
        composeSignature(prefix + "Signature", (Signature) type);
    } else if (type instanceof Timing) {
        composeTiming(prefix + "Timing", (Timing) type);
    } else if (type instanceof TriggerDefinition) {
        composeTriggerDefinition(prefix + "TriggerDefinition", (TriggerDefinition) type);
    } else if (type instanceof UsageContext) {
        composeUsageContext(prefix + "UsageContext", (UsageContext) type);
    } else if (type instanceof CodeType) {
        composeCodeCore(prefix + "Code", (CodeType) type, false);
        composeCodeExtras(prefix + "Code", (CodeType) type, false);
    } else if (type instanceof OidType) {
        composeOidCore(prefix + "Oid", (OidType) type, false);
        composeOidExtras(prefix + "Oid", (OidType) type, false);
    } else if (type instanceof CanonicalType) {
        composeCanonicalCore(prefix + "Canonical", (CanonicalType) type, false);
        composeCanonicalExtras(prefix + "Canonical", (CanonicalType) type, false);
    } else if (type instanceof UuidType) {
        composeUuidCore(prefix + "Uuid", (UuidType) type, false);
        composeUuidExtras(prefix + "Uuid", (UuidType) type, false);
    } else if (type instanceof UrlType) {
        composeUrlCore(prefix + "Url", (UrlType) type, false);
        composeUrlExtras(prefix + "Url", (UrlType) type, false);
    } else if (type instanceof UnsignedIntType) {
        composeUnsignedIntCore(prefix + "UnsignedInt", (UnsignedIntType) type, false);
        composeUnsignedIntExtras(prefix + "UnsignedInt", (UnsignedIntType) type, false);
    } else if (type instanceof MarkdownType) {
        composeMarkdownCore(prefix + "Markdown", (MarkdownType) type, false);
        composeMarkdownExtras(prefix + "Markdown", (MarkdownType) type, false);
    } else if (type instanceof IdType) {
        composeIdCore(prefix + "Id", (IdType) type, false);
        composeIdExtras(prefix + "Id", (IdType) type, false);
    } else if (type instanceof PositiveIntType) {
        composePositiveIntCore(prefix + "PositiveInt", (PositiveIntType) type, false);
        composePositiveIntExtras(prefix + "PositiveInt", (PositiveIntType) type, false);
    } else if (type instanceof DateType) {
        composeDateCore(prefix + "Date", (DateType) type, false);
        composeDateExtras(prefix + "Date", (DateType) type, false);
    } else if (type instanceof DateTimeType) {
        composeDateTimeCore(prefix + "DateTime", (DateTimeType) type, false);
        composeDateTimeExtras(prefix + "DateTime", (DateTimeType) type, false);
    } else if (type instanceof StringType) {
        composeStringCore(prefix + "String", (StringType) type, false);
        composeStringExtras(prefix + "String", (StringType) type, false);
    } else if (type instanceof IntegerType) {
        composeIntegerCore(prefix + "Integer", (IntegerType) type, false);
        composeIntegerExtras(prefix + "Integer", (IntegerType) type, false);
    } else if (type instanceof Integer64Type) {
        composeInteger64Core(prefix + "Integer64", (Integer64Type) type, false);
        composeInteger64Extras(prefix + "Integer64", (Integer64Type) type, false);
    } else if (type instanceof UriType) {
        composeUriCore(prefix + "Uri", (UriType) type, false);
        composeUriExtras(prefix + "Uri", (UriType) type, false);
    } else if (type instanceof InstantType) {
        composeInstantCore(prefix + "Instant", (InstantType) type, false);
        composeInstantExtras(prefix + "Instant", (InstantType) type, false);
    } else if (type instanceof BooleanType) {
        composeBooleanCore(prefix + "Boolean", (BooleanType) type, false);
        composeBooleanExtras(prefix + "Boolean", (BooleanType) type, false);
    } else if (type instanceof Base64BinaryType) {
        composeBase64BinaryCore(prefix + "Base64Binary", (Base64BinaryType) type, false);
        composeBase64BinaryExtras(prefix + "Base64Binary", (Base64BinaryType) type, false);
    } else if (type instanceof TimeType) {
        composeTimeCore(prefix + "Time", (TimeType) type, false);
        composeTimeExtras(prefix + "Time", (TimeType) type, false);
    } else if (type instanceof DecimalType) {
        composeDecimalCore(prefix + "Decimal", (DecimalType) type, false);
        composeDecimalExtras(prefix + "Decimal", (DecimalType) type, false);
    } else
        throw new Error("Unhandled type");
}