use of org.hl7.fhir.dstu2.model.InstantType in project quality-measure-and-cohort-service by Alvearie.
the class MeasureEvaluatorTest method measure_report_generated___FHIR_measure_parameters_on_measure_report.
@Test
public void measure_report_generated___FHIR_measure_parameters_on_measure_report() throws Exception {
CapabilityStatement metadata = getCapabilityStatement();
mockFhirResourceRetrieval("/metadata?_format=json", metadata);
Patient patient = getPatient("123", AdministrativeGender.MALE, "1970-10-10");
mockFhirResourceRetrieval(patient);
Library library = mockLibraryRetrieval("TestDummyPopulations", DEFAULT_VERSION, "cql/fhir-measure/test-dummy-populations.xml", ELM_MIME_TYPE);
Measure measure = getCohortMeasure("CohortMeasureName", library, INITIAL_POPULATION);
Map<String, Type> measureParameters = new HashMap<>();
measureParameters.put("base64Param", new Base64BinaryType("AAA"));
measureParameters.put("booleanParam", new BooleanType(false));
measureParameters.put("dateParam", new DateType("2020-01-01"));
measureParameters.put("dateTimeParam", new DateTimeType("2020-01-01T12:00:00"));
measureParameters.put("decimalParam", new DecimalType(12.0));
measureParameters.put("instantParam", new InstantType("2020-01-01T12:00:00-04:00"));
measureParameters.put("integerParam", new IntegerType(1));
measureParameters.put("stringParam", new StringType("str"));
measureParameters.put("timeParam", new TimeType("05:30:00"));
measureParameters.put("uriParam", new UriType("abcde"));
measureParameters.put("codeableConceptParam", new CodeableConcept().setText("display").addCoding(new Coding().setCode("val").setSystem("sys").setDisplay("display")));
measureParameters.put("codingParam", new Coding().setCode("v").setSystem("s").setDisplay("d"));
measureParameters.put("periodParam", new Period().setStart(new Date(1)).setEnd(new Date(2)));
measureParameters.put("quantityParam", new Quantity().setValue(1).setUnit("g"));
measureParameters.put("rangeParam", new Range().setLow(new Quantity().setUnit("g").setValue(1)).setHigh(new Quantity().setUnit("g").setValue(5)));
measureParameters.put("ratioParam", new Ratio().setNumerator(new Quantity().setUnit("g").setValue(1)).setDenominator(new Quantity().setUnit("g").setValue(5)));
List<Extension> parameterExtensions = measureParameters.entrySet().stream().map(x -> createMeasureParameter(x.getKey(), x.getValue())).collect(Collectors.toList());
measure.setExtension(parameterExtensions);
mockFhirResourceRetrieval(measure);
MeasureReport report = evaluator.evaluatePatientMeasure(measure.getId(), patient.getId(), null);
assertNotNull(report);
List<String> parameterNames = report.getExtension().stream().filter(x -> x.getUrl().equals(MEASURE_PARAMETER_VALUE_URL)).map(x -> (ParameterDefinition) x.getValue()).map(ParameterDefinition::getName).collect(Collectors.toList());
// Expected parameters are the ones listed above, plus the special parameters
// measurement period and product line
assertEquals(measureParameters.size() + 2, parameterNames.size());
assertTrue(parameterNames.containsAll(measureParameters.keySet()));
assertTrue(parameterNames.contains(CDMConstants.MEASUREMENT_PERIOD));
assertTrue(parameterNames.contains(CDMConstants.PRODUCT_LINE));
}
use of org.hl7.fhir.dstu2.model.InstantType in project integration-adaptor-111 by nhsconnect.
the class EncounterReportBundleService method addMessageHeader.
private void addMessageHeader(Bundle bundle, MessageHeader messageHeader) {
Bundle.BundleEntryResponseComponent responseComponent = new Bundle.BundleEntryResponseComponent().setStatus("success").setLastModifiedElement(new InstantType(new Date(), MILLI, getTimeZone(UTC)));
bundle.addEntry().setFullUrl(createFullUrl(messageHeader)).setResource(messageHeader).setResponse(responseComponent);
}
use of org.hl7.fhir.dstu2.model.InstantType in project org.hl7.fhir.core by hapifhir.
the class NarrativeGenerator method renderLeaf.
private void renderLeaf(ResourceWrapper res, BaseWrapper ew, ElementDefinition defn, XhtmlNode x, boolean title, boolean showCodeDetails, Map<String, String> displayHints) throws FHIRException, UnsupportedEncodingException, IOException {
if (ew == null)
return;
Base e = ew.getBase();
if (e instanceof StringType)
x.addText(((StringType) e).getValue());
else if (e instanceof CodeType)
x.addText(((CodeType) e).getValue());
else if (e instanceof IdType)
x.addText(((IdType) e).getValue());
else if (e instanceof Extension)
x.addText("Extensions: Todo");
else if (e instanceof InstantType)
x.addText(((InstantType) e).toHumanDisplay());
else if (e instanceof DateTimeType)
x.addText(((DateTimeType) e).toHumanDisplay());
else if (e instanceof Base64BinaryType)
x.addText(new Base64().encodeAsString(((Base64BinaryType) e).getValue()));
else if (e instanceof org.hl7.fhir.dstu2.model.DateType)
x.addText(((org.hl7.fhir.dstu2.model.DateType) e).toHumanDisplay());
else if (e instanceof Enumeration) {
Object ev = ((Enumeration<?>) e).getValue();
// todo: look up a display name if there is one
x.addText(ev == null ? "" : ev.toString());
} else if (e instanceof BooleanType)
x.addText(((BooleanType) e).getValue().toString());
else if (e instanceof CodeableConcept) {
renderCodeableConcept((CodeableConcept) e, x, showCodeDetails);
} else if (e instanceof Coding) {
renderCoding((Coding) e, x, showCodeDetails);
} else if (e instanceof Annotation) {
renderAnnotation((Annotation) e, x);
} else if (e instanceof Identifier) {
renderIdentifier((Identifier) e, x);
} else if (e instanceof org.hl7.fhir.dstu2.model.IntegerType) {
x.addText(Integer.toString(((org.hl7.fhir.dstu2.model.IntegerType) e).getValue()));
} else if (e instanceof org.hl7.fhir.dstu2.model.DecimalType) {
x.addText(((org.hl7.fhir.dstu2.model.DecimalType) e).getValue().toString());
} else if (e instanceof HumanName) {
renderHumanName((HumanName) e, x);
} else if (e instanceof SampledData) {
renderSampledData((SampledData) e, x);
} else if (e instanceof Address) {
renderAddress((Address) e, x);
} else if (e instanceof ContactPoint) {
renderContactPoint((ContactPoint) e, x);
} else if (e instanceof UriType) {
renderUri((UriType) e, x);
} else if (e instanceof Timing) {
renderTiming((Timing) e, x);
} else if (e instanceof Range) {
renderRange((Range) e, x);
} else if (e instanceof Quantity) {
renderQuantity((Quantity) e, x, showCodeDetails);
} else if (e instanceof Ratio) {
renderQuantity(((Ratio) e).getNumerator(), x, showCodeDetails);
x.addText("/");
renderQuantity(((Ratio) e).getDenominator(), x, showCodeDetails);
} else if (e instanceof Period) {
Period p = (Period) e;
x.addText(!p.hasStart() ? "??" : p.getStartElement().toHumanDisplay());
x.addText(" --> ");
x.addText(!p.hasEnd() ? "(ongoing)" : p.getEndElement().toHumanDisplay());
} else if (e instanceof Reference) {
Reference r = (Reference) e;
XhtmlNode c = x;
ResourceWithReference tr = null;
if (r.hasReferenceElement()) {
tr = resolveReference(res, r.getReference());
if (!r.getReference().startsWith("#")) {
if (tr != null && tr.getReference() != null)
c = x.addTag("a").attribute("href", tr.getReference());
else
c = x.addTag("a").attribute("href", r.getReference());
}
}
// what to display: if text is provided, then that. if the reference was resolved, then show the generated narrative
if (r.hasDisplayElement()) {
c.addText(r.getDisplay());
if (tr != null) {
c.addText(". Generated Summary: ");
generateResourceSummary(c, tr.getResource(), true, r.getReference().startsWith("#"));
}
} else if (tr != null) {
generateResourceSummary(c, tr.getResource(), r.getReference().startsWith("#"), r.getReference().startsWith("#"));
} else {
c.addText(r.getReference());
}
} else if (e instanceof Resource) {
return;
} else if (e instanceof ElementDefinition) {
x.addText("todo-bundle");
} else if (e != null && !(e instanceof Attachment) && !(e instanceof Narrative) && !(e instanceof Meta))
throw new NotImplementedException("type " + e.getClass().getName() + " not handled yet");
}
use of org.hl7.fhir.dstu2.model.InstantType in project org.hl7.fhir.core by hapifhir.
the class JsonParser method composeType.
protected void composeType(String prefix, Type type) throws IOException {
if (type == null)
;
else if (type instanceof Age)
composeAge(prefix + "Age", (Age) type);
else if (type instanceof Count)
composeCount(prefix + "Count", (Count) type);
else if (type instanceof Money)
composeMoney(prefix + "Money", (Money) type);
else if (type instanceof Distance)
composeDistance(prefix + "Distance", (Distance) type);
else if (type instanceof Duration)
composeDuration(prefix + "Duration", (Duration) type);
else if (type instanceof SimpleQuantity)
composeSimpleQuantity(prefix + "SimpleQuantity", (SimpleQuantity) type);
else if (type instanceof Period)
composePeriod(prefix + "Period", (Period) type);
else if (type instanceof Coding)
composeCoding(prefix + "Coding", (Coding) type);
else if (type instanceof Range)
composeRange(prefix + "Range", (Range) type);
else if (type instanceof Quantity)
composeQuantity(prefix + "Quantity", (Quantity) type);
else if (type instanceof Attachment)
composeAttachment(prefix + "Attachment", (Attachment) type);
else if (type instanceof Ratio)
composeRatio(prefix + "Ratio", (Ratio) type);
else if (type instanceof Annotation)
composeAnnotation(prefix + "Annotation", (Annotation) type);
else if (type instanceof SampledData)
composeSampledData(prefix + "SampledData", (SampledData) type);
else if (type instanceof Reference)
composeReference(prefix + "Reference", (Reference) type);
else if (type instanceof CodeableConcept)
composeCodeableConcept(prefix + "CodeableConcept", (CodeableConcept) type);
else if (type instanceof Identifier)
composeIdentifier(prefix + "Identifier", (Identifier) type);
else if (type instanceof Signature)
composeSignature(prefix + "Signature", (Signature) type);
else if (type instanceof TriggerDefinition)
composeTriggerDefinition(prefix + "TriggerDefinition", (TriggerDefinition) type);
else if (type instanceof ElementDefinition)
composeElementDefinition(prefix + "ElementDefinition", (ElementDefinition) type);
else if (type instanceof Timing)
composeTiming(prefix + "Timing", (Timing) type);
else if (type instanceof ModuleMetadata)
composeModuleMetadata(prefix + "ModuleMetadata", (ModuleMetadata) type);
else if (type instanceof ActionDefinition)
composeActionDefinition(prefix + "ActionDefinition", (ActionDefinition) type);
else if (type instanceof Address)
composeAddress(prefix + "Address", (Address) type);
else if (type instanceof HumanName)
composeHumanName(prefix + "HumanName", (HumanName) type);
else if (type instanceof DataRequirement)
composeDataRequirement(prefix + "DataRequirement", (DataRequirement) type);
else if (type instanceof Meta)
composeMeta(prefix + "Meta", (Meta) type);
else if (type instanceof ParameterDefinition)
composeParameterDefinition(prefix + "ParameterDefinition", (ParameterDefinition) type);
else if (type instanceof ContactPoint)
composeContactPoint(prefix + "ContactPoint", (ContactPoint) type);
else if (type instanceof MarkdownType) {
composeMarkdownCore(prefix + "Markdown", (MarkdownType) type, false);
composeMarkdownExtras(prefix + "Markdown", (MarkdownType) type, false);
} else if (type instanceof UnsignedIntType) {
composeUnsignedIntCore(prefix + "UnsignedInt", (UnsignedIntType) type, false);
composeUnsignedIntExtras(prefix + "UnsignedInt", (UnsignedIntType) type, false);
} else if (type instanceof CodeType) {
composeCodeCore(prefix + "Code", (CodeType) type, false);
composeCodeExtras(prefix + "Code", (CodeType) type, false);
} else if (type instanceof IdType) {
composeIdCore(prefix + "Id", (IdType) type, false);
composeIdExtras(prefix + "Id", (IdType) type, false);
} else if (type instanceof OidType) {
composeOidCore(prefix + "Oid", (OidType) type, false);
composeOidExtras(prefix + "Oid", (OidType) type, false);
} else if (type instanceof PositiveIntType) {
composePositiveIntCore(prefix + "PositiveInt", (PositiveIntType) type, false);
composePositiveIntExtras(prefix + "PositiveInt", (PositiveIntType) type, false);
} else if (type instanceof UuidType) {
composeUuidCore(prefix + "Uuid", (UuidType) type, false);
composeUuidExtras(prefix + "Uuid", (UuidType) type, false);
} else if (type instanceof IntegerType) {
composeIntegerCore(prefix + "Integer", (IntegerType) type, false);
composeIntegerExtras(prefix + "Integer", (IntegerType) type, false);
} else if (type instanceof DateTimeType) {
composeDateTimeCore(prefix + "DateTime", (DateTimeType) type, false);
composeDateTimeExtras(prefix + "DateTime", (DateTimeType) type, false);
} else if (type instanceof DateType) {
composeDateCore(prefix + "Date", (DateType) type, false);
composeDateExtras(prefix + "Date", (DateType) type, false);
} else if (type instanceof DecimalType) {
composeDecimalCore(prefix + "Decimal", (DecimalType) type, false);
composeDecimalExtras(prefix + "Decimal", (DecimalType) type, false);
} else if (type instanceof UriType) {
composeUriCore(prefix + "Uri", (UriType) type, false);
composeUriExtras(prefix + "Uri", (UriType) type, false);
} else if (type instanceof Base64BinaryType) {
composeBase64BinaryCore(prefix + "Base64Binary", (Base64BinaryType) type, false);
composeBase64BinaryExtras(prefix + "Base64Binary", (Base64BinaryType) type, false);
} else if (type instanceof TimeType) {
composeTimeCore(prefix + "Time", (TimeType) type, false);
composeTimeExtras(prefix + "Time", (TimeType) type, false);
} else if (type instanceof StringType) {
composeStringCore(prefix + "String", (StringType) type, false);
composeStringExtras(prefix + "String", (StringType) type, false);
} else if (type instanceof BooleanType) {
composeBooleanCore(prefix + "Boolean", (BooleanType) type, false);
composeBooleanExtras(prefix + "Boolean", (BooleanType) type, false);
} else if (type instanceof InstantType) {
composeInstantCore(prefix + "Instant", (InstantType) type, false);
composeInstantExtras(prefix + "Instant", (InstantType) type, false);
} else
throw new Error("Unhandled type");
}
use of org.hl7.fhir.dstu2.model.InstantType in project org.hl7.fhir.core by hapifhir.
the class RdfParser method composeInstant.
protected void composeInstant(Complex parent, String parentType, String name, InstantType value, int index) {
if (value == null)
return;
Complex t = parent.predicate("fhir:" + parentType + "." + name);
t.predicate("fhir:value", ttlLiteral(value.asStringValue()));
composeElement(t, parentType, name, value, index);
}
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