Examples with UriType org.hl7.fhir.r5.model.UriType used on opensource projects

Example 76 with UriType

use of org.hl7.fhir.r5.model.UriType in project org.hl7.fhir.core by hapifhir.

the class ProfileUtilities method generateExtensionTable.

public XhtmlNode generateExtensionTable(String defFile, StructureDefinition ed, String imageFolder, boolean inlineGraphics, boolean full, String corePath, String imagePath, Set<String> outputTracker, RenderingContext rc) throws IOException, FHIRException {
    HierarchicalTableGenerator gen = new HierarchicalTableGenerator(imageFolder, inlineGraphics, true);
    gen.setTranslator(getTranslator());
    TableModel model = gen.initNormalTable(corePath, false, true, ed.getId() + (full ? "f" : "n"), true);
    boolean deep = false;
    String m = "";
    boolean vdeep = false;
    if (ed.getSnapshot().getElementFirstRep().getIsModifier())
        m = "modifier_";
    for (ElementDefinition eld : ed.getSnapshot().getElement()) {
        deep = deep || eld.getPath().contains("Extension.extension.");
        vdeep = vdeep || eld.getPath().contains("Extension.extension.extension.");
    }
    Row r = gen.new Row();
    model.getRows().add(r);
    String en;
    if (!full)
        en = ed.getName();
    else if (ed.getSnapshot().getElement().get(0).getIsModifier())
        en = "modifierExtension";
    else
        en = "extension";
    r.getCells().add(gen.new Cell(null, defFile == null ? "" : defFile + "-definitions.html#extension." + ed.getName(), en, null, null));
    r.getCells().add(gen.new Cell());
    r.getCells().add(gen.new Cell(null, null, describeCardinality(ed.getSnapshot().getElement().get(0), null, new UnusedTracker()), null, null));
    ElementDefinition ved = null;
    if (full || vdeep) {
        r.getCells().add(gen.new Cell("", "", "Extension", null, null));
        r.setIcon(deep ? "icon_" + m + "extension_complex.png" : "icon_extension_simple.png", deep ? HierarchicalTableGenerator.TEXT_ICON_EXTENSION_COMPLEX : HierarchicalTableGenerator.TEXT_ICON_EXTENSION_SIMPLE);
        List<ElementDefinition> children = getChildren(ed.getSnapshot().getElement(), ed.getSnapshot().getElement().get(0));
        for (ElementDefinition child : children) if (!child.getPath().endsWith(".id")) {
            List<StructureDefinition> sdl = new ArrayList<>();
            sdl.add(ed);
            genElement(defFile == null ? "" : defFile + "-definitions.html#extension.", gen, r.getSubRows(), child, ed.getSnapshot().getElement(), sdl, true, defFile, true, full, corePath, imagePath, true, false, false, false, null, false, rc);
        }
    } else if (deep) {
        List<ElementDefinition> children = new ArrayList<ElementDefinition>();
        for (ElementDefinition ted : ed.getSnapshot().getElement()) {
            if (ted.getPath().equals("Extension.extension"))
                children.add(ted);
        }
        r.getCells().add(gen.new Cell("", "", "Extension", null, null));
        r.setIcon("icon_" + m + "extension_complex.png", HierarchicalTableGenerator.TEXT_ICON_EXTENSION_COMPLEX);
        for (ElementDefinition c : children) {
            ved = getValueFor(ed, c);
            ElementDefinition ued = getUrlFor(ed, c);
            if (ved != null && ued != null) {
                Row r1 = gen.new Row();
                r.getSubRows().add(r1);
                r1.getCells().add(gen.new Cell(null, defFile == null ? "" : defFile + "-definitions.html#extension." + ed.getName(), ((UriType) ued.getFixed()).getValue(), null, null));
                r1.getCells().add(gen.new Cell());
                r1.getCells().add(gen.new Cell(null, null, describeCardinality(c, null, new UnusedTracker()), null, null));
                genTypes(gen, r1, ved, defFile, ed, corePath, imagePath, false, false);
                Cell cell = gen.new Cell();
                cell.addMarkdown(c.getDefinition());
                r1.getCells().add(cell);
                r1.setIcon("icon_" + m + "extension_simple.png", HierarchicalTableGenerator.TEXT_ICON_EXTENSION_SIMPLE);
            }
        }
    } else {
        for (ElementDefinition ted : ed.getSnapshot().getElement()) {
            if (ted.getPath().startsWith("Extension.value"))
                ved = ted;
        }
        genTypes(gen, r, ved, defFile, ed, corePath, imagePath, false, false);
        r.setIcon("icon_" + m + "extension_simple.png", HierarchicalTableGenerator.TEXT_ICON_EXTENSION_SIMPLE);
    }
    Cell c = gen.new Cell("", "", "URL = " + ed.getUrl(), null, null);
    Piece cc = gen.new Piece(null, ed.getName() + ": ", null);
    c.addPiece(gen.new Piece("br")).addPiece(cc);
    c.addMarkdown(ed.getDescription());
    if (!full && !(deep || vdeep) && ved != null && ved.hasBinding()) {
        c.addPiece(gen.new Piece("br"));
        BindingResolution br = pkp.resolveBinding(ed, ved.getBinding(), ved.getPath());
        c.getPieces().add(checkForNoChange(ved.getBinding(), gen.new Piece(null, translate("sd.table", "Binding") + ": ", null).addStyle("font-weight:bold")));
        c.getPieces().add(checkForNoChange(ved.getBinding(), gen.new Piece(br.url == null ? null : Utilities.isAbsoluteUrl(br.url) || !pkp.prependLinks() ? br.url : corePath + br.url, br.display, null)));
        if (ved.getBinding().hasStrength()) {
            c.getPieces().add(checkForNoChange(ved.getBinding(), gen.new Piece(null, " (", null)));
            c.getPieces().add(checkForNoChange(ved.getBinding(), gen.new Piece(corePath + "terminologies.html#" + ved.getBinding().getStrength().toCode(), egt(ved.getBinding().getStrengthElement()), ved.getBinding().getStrength().getDefinition())));
            c.getPieces().add(gen.new Piece(null, ")", null));
        }
        if (ved.getBinding().hasDescription() && MarkDownProcessor.isSimpleMarkdown(ved.getBinding().getDescription())) {
            c.getPieces().add(gen.new Piece(null, ": ", null));
            c.addMarkdownNoPara(PublicationHacker.fixBindingDescriptions(context, ved.getBinding().getDescriptionElement()).asStringValue());
        }
    }
    c.addPiece(gen.new Piece("br")).addPiece(gen.new Piece(null, describeExtensionContext(ed), null));
    r.getCells().add(c);
    try {
        return gen.generate(model, corePath, 0, outputTracker);
    } catch (org.hl7.fhir.exceptions.FHIRException e) {
        throw new FHIRException(e.getMessage(), e);
    }
}

Example 77 with UriType

use of org.hl7.fhir.r5.model.UriType in project org.hl7.fhir.core by hapifhir.

the class ProfileUtilities method generateSlicer.

private Slicer generateSlicer(ElementDefinition child, ElementDefinitionSlicingComponent slicing, StructureDefinition structure) {
    // given a child in a structure, it's sliced. figure out the slicing xpath
    if (child.getPath().endsWith(".extension")) {
        ElementDefinition ued = getUrlFor(structure, child);
        if ((ued == null || !ued.hasFixed()) && !(child.hasType() && (child.getType().get(0).hasProfile())))
            return new Slicer(false);
        else {
            Slicer s = new Slicer(true);
            String url = (ued == null || !ued.hasFixed()) ? child.getType().get(0).getProfile().get(0).getValue() : ((UriType) ued.getFixed()).asStringValue();
            s.name = " with URL = '" + url + "'";
            s.criteria = "[@url = '" + url + "']";
            return s;
        }
    } else
        return new Slicer(false);
}

Example 78 with UriType

use of org.hl7.fhir.r5.model.UriType in project org.hl7.fhir.core by hapifhir.

the class BaseWorkerContext method validateOnServer.

protected ValidationResult validateOnServer(ValueSet vs, Parameters pin, ValidationOptions options) throws FHIRException {
    boolean cache = false;
    if (vs != null) {
        for (ConceptSetComponent inc : vs.getCompose().getInclude()) {
            codeSystemsUsed.add(inc.getSystem());
        }
        for (ConceptSetComponent inc : vs.getCompose().getExclude()) {
            codeSystemsUsed.add(inc.getSystem());
        }
    }
    if (vs != null) {
        if (isTxCaching && cacheId != null && vs.getUrl() != null && cached.contains(vs.getUrl() + "|" + vs.getVersion())) {
            pin.addParameter().setName("url").setValue(new UriType(vs.getUrl() + (vs.hasVersion() ? "|" + vs.getVersion() : "")));
        } else if (options.getVsAsUrl()) {
            pin.addParameter().setName("url").setValue(new StringType(vs.getUrl()));
        } else {
            pin.addParameter().setName("valueSet").setResource(vs);
            if (vs.getUrl() != null) {
                cached.add(vs.getUrl() + "|" + vs.getVersion());
            }
        }
        cache = true;
        addDependentResources(pin, vs);
    }
    if (cache) {
        pin.addParameter().setName("cache-id").setValue(new StringType(cacheId));
    }
    for (ParametersParameterComponent pp : pin.getParameter()) {
        if (pp.getName().equals("profile")) {
            throw new Error(formatMessage(I18nConstants.CAN_ONLY_SPECIFY_PROFILE_IN_THE_CONTEXT));
        }
    }
    if (expParameters == null) {
        throw new Error(formatMessage(I18nConstants.NO_EXPANSIONPROFILE_PROVIDED));
    }
    pin.addParameter().setName("profile").setResource(expParameters);
    if (txLog != null) {
        txLog.clearLastId();
    }
    if (txClient == null) {
        throw new FHIRException(formatMessage(I18nConstants.ATTEMPT_TO_USE_TERMINOLOGY_SERVER_WHEN_NO_TERMINOLOGY_SERVER_IS_AVAILABLE));
    }
    Parameters pOut;
    if (vs == null) {
        pOut = txClient.validateCS(pin);
    } else {
        pOut = txClient.validateVS(pin);
    }
    return processValidationResult(pOut);
}

Example 79 with UriType

use of org.hl7.fhir.r5.model.UriType in project org.hl7.fhir.core by hapifhir.

the class ProfileUtilities method checkTypeDerivation.

public void checkTypeDerivation(String purl, StructureDefinition srcSD, ElementDefinition base, ElementDefinition derived, TypeRefComponent ts) {
    boolean ok = false;
    CommaSeparatedStringBuilder b = new CommaSeparatedStringBuilder();
    String t = ts.getWorkingCode();
    for (TypeRefComponent td : base.getType()) {
        ;
        String tt = td.getWorkingCode();
        b.append(tt);
        if (td.hasCode() && (tt.equals(t))) {
            ok = true;
        }
        if (!ok) {
            StructureDefinition sdt = context.fetchTypeDefinition(tt);
            if (sdt != null && (sdt.getAbstract() || sdt.getKind() == StructureDefinitionKind.LOGICAL)) {
                StructureDefinition sdb = context.fetchTypeDefinition(t);
                while (sdb != null && !ok) {
                    ok = sdb.getType().equals(sdt.getType());
                    sdb = context.fetchResource(StructureDefinition.class, sdb.getBaseDefinition());
                }
            }
        }
        // work around for old badly generated SDs
        if (DONT_DO_THIS && Utilities.existsInList(tt, "Extension", "uri", "string", "Element")) {
            ok = true;
        }
        if (DONT_DO_THIS && Utilities.existsInList(tt, "Resource", "DomainResource") && pkp.isResource(t)) {
            ok = true;
        }
        if (ok && ts.hasTargetProfile()) {
            // check that any derived target has a reference chain back to one of the base target profiles
            for (UriType u : ts.getTargetProfile()) {
                String url = u.getValue();
                boolean tgtOk = !td.hasTargetProfile() || td.hasTargetProfile(url);
                while (url != null && !tgtOk) {
                    StructureDefinition sd = context.fetchRawProfile(url);
                    if (sd == null) {
                        if (messages != null) {
                            messages.add(new ValidationMessage(Source.InstanceValidator, IssueType.BUSINESSRULE, purl + "#" + derived.getPath(), "Cannot check whether the target profile " + url + " is valid constraint on the base because it is not known", IssueSeverity.WARNING));
                        }
                        url = null;
                        // suppress error message
                        tgtOk = true;
                    } else {
                        url = sd.getBaseDefinition();
                        tgtOk = td.hasTargetProfile(url);
                    }
                }
                if (!tgtOk) {
                    if (messages == null) {
                        throw new FHIRException(context.formatMessage(I18nConstants.ERROR_AT__THE_TARGET_PROFILE__IS_NOT__VALID_CONSTRAINT_ON_THE_BASE_, purl, derived.getPath(), url, td.getTargetProfile()));
                    } else {
                        messages.add(new ValidationMessage(Source.InstanceValidator, IssueType.BUSINESSRULE, derived.getPath(), "The target profile " + u.getValue() + " is not a valid constraint on the base (" + td.getTargetProfile() + ") at " + derived.getPath(), IssueSeverity.ERROR));
                    }
                }
            }
        }
    }
    if (!ok) {
        throw new DefinitionException(context.formatMessage(I18nConstants.STRUCTUREDEFINITION__AT__ILLEGAL_CONSTRAINED_TYPE__FROM__IN_, purl, derived.getPath(), t, b.toString(), srcSD.getUrl()));
    }
}

Example 80 with UriType

use of org.hl7.fhir.r5.model.UriType in project org.hl7.fhir.core by hapifhir.

the class ProfileUtilities method makeExtensionForVersionedURL.

public static StructureDefinition makeExtensionForVersionedURL(IWorkerContext context, String url) {
    String epath = url.substring(54);
    if (!epath.contains("."))
        return null;
    String type = epath.substring(0, epath.indexOf("."));
    StructureDefinition sd = context.fetchTypeDefinition(type);
    if (sd == null)
        return null;
    ElementDefinition ed = null;
    for (ElementDefinition t : sd.getSnapshot().getElement()) {
        if (t.getPath().equals(epath)) {
            ed = t;
            break;
        }
    }
    if (ed == null)
        return null;
    if ("Element".equals(ed.typeSummary()) || "BackboneElement".equals(ed.typeSummary())) {
        return null;
    } else {
        StructureDefinition template = context.fetchResource(StructureDefinition.class, "http://fhir-registry.smarthealthit.org/StructureDefinition/capabilities");
        StructureDefinition ext = template.copy();
        ext.setUrl(url);
        ext.setId("extension-" + epath);
        ext.setName("Extension-" + epath);
        ext.setTitle("Extension for r4 " + epath);
        ext.setStatus(sd.getStatus());
        ext.setDate(sd.getDate());
        ext.getContact().clear();
        ext.getContact().addAll(sd.getContact());
        ext.setFhirVersion(sd.getFhirVersion());
        ext.setDescription(ed.getDefinition());
        ext.getContext().clear();
        ext.addContext().setType(ExtensionContextType.ELEMENT).setExpression(epath.substring(0, epath.lastIndexOf(".")));
        ext.getDifferential().getElement().clear();
        ext.getSnapshot().getElement().get(3).setFixed(new UriType(url));
        ext.getSnapshot().getElement().set(4, ed.copy());
        ext.getSnapshot().getElement().get(4).setPath("Extension.value" + Utilities.capitalize(ed.typeSummary()));
        return ext;
    }
}